Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008970

Physical Location & Seq

Genomic Coordinates Reverse (-)

27559481 .. 27563113

Gene Structure 3633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g28100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCACAAGTTTGAGATAGGTACGCTTCTGGAGCTGATTCAGCGGTACCGAGTGTCGGTGGCAGCGGTGGTGCCGCCGCTGGTTATAGCGCTGGCGAAGAACCCAATGGTGGCGGAGTTTGACCTGAGCTCTATTAGGGTGGTGTTGTCGGGAGCGGCGCCCCTGGGGAAGGAGCTGGAGGAGGCGCTCAAGAGCCGAGTCCCTCAGGCAGTGTTGGGTCAGGGTTATGGGATGACGGAGGCAGGGCCGGTGCTGTCAATGTGCATGGCATTCGCAAAGGAACCGATGCCATCCAAGTCAGGTTCGTGTGGGACGGTGGTCCGAAATGCAGAGCTCAAGGTCCTTGACCCTGAAACTGGTCTGTCACTTGGCTATAACCAACCAGGCGAGATTTGCATCCGTGGTTCTCAAATTATGAAAGGATATTTGAATGACGTTGCGGCTACGGCAACCACCATAGACACGGAGGGCTGGCTTCACACTGGTGACGTGGGTTATGTGGATGATGACGATGAGGTTTTCATCGTTGACAGAGTCAAGGAGCTCATCAAATTCAAGGGCTTCCAAGTGCCACCAGCTGAGCTGGAGTCCCTCCTTATAAGCCACCCATCAATTGCAGATGCGGCCGTTGTTCCGCAAAAAGATGCTGCTGCTGGTGAGGTTCCCGTTGCATTTGTGGTTCGGTCTGATGGTCTTGAACTTACTGAAGAGGCTGTAAAAGAATTTATAGCAAAACAGGTGGTGTTTTACAAGAGACTGCACAAGGTGCACTTTGTCCGTGCAATTCCAAAGTCTGCGTCTGGAAAGATCTTGAGAAAAGACCTGAGAGCCAAGCTTGCCACCGCAACCCCACCGCTGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009653 GO:0009698 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016207 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019748 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0085029 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

288

Amino Acids

30.9

Weight (kDa)

6.02

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65060 AT1G65060
fragaria_vesca	FvH4_7g33990 FvH4_7g33990
malus_domestica	MD01G1236300.v1.1 MD07G1309000.v1.1
prunus_persica	Prupe.2G326300_v2.0.a1
pyrus_communis	pycom01g24420 pycom07g28100
rosa_chinensis	RchiOBHm_Chr1g0384231
rosa_laevigata	RLG00000026055
rosa_multiflora	Rmu_co8391797.1_g000001 Rmu_sc0011271.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276820
rosa_rugosa	Rorug01G0446000
rosa_samantha	Rh1AG471500 Rh1BG429300 Rh1CG441900 Rh1DG462000 Rh6BG015700 Rh7CG464300
rosa_wichuraiana	Rw1G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
Acc65I	GGTACC	1 cut(s)	45
AccB1I	GGYRCC	3 cut(s)	45, 70, 157
AccBSI	CCGCTC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	2 cut(s)	551, 722
AcuI	CTGAAG	1 cut(s)	726
AcyI	GRCGYC	1 cut(s)	158
AdeI	CACNNNGTG	1 cut(s)	766
AfaI	GTAC	2 cut(s)	22, 47
AfeI	AGCGCT	1 cut(s)	90
AfiI	CCNNNNNNNGG	4 cut(s)	55, 109, 169, 356
AgsI	TTSAA	3 cut(s)	430, 556, 698
AjiI	CACGTC	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	162, 382
AleI	CACNNNNGTG	1 cut(s)	483
AluBI	AGCT	8 cut(s)	34, 129, 175, 334, 544, 578, 583, 835
AluI	AGCT	8 cut(s)	34, 129, 175, 334, 544, 578, 583, 835
Alw21I	GWGCWC	4 cut(s)	131, 336, 546, 771
Alw26I	GTCTC	1 cut(s)	748
Alw44I	GTGCAC	1 cut(s)	767
Aor51HI	AGCGCT	1 cut(s)	90
AoxI	GGCC	2 cut(s)	245, 624
ApaLI	GTGCAC	1 cut(s)	767
ApeKI	GCWGC	4 cut(s)	62, 647, 650, 856
ApoI	RAATTY	2 cut(s)	551, 722
ArsI	GACNNNNNNTTYG	2 cut(s)	782, 814
Asp718I	GGTACC	1 cut(s)	45
AspLEI	GCGC	3 cut(s)	91, 160, 187
AspS9I	GGNCC	3 cut(s)	245, 319, 340
AsuHPI	GGTGA	2 cut(s)	497, 668
AvaII	GGWCC	2 cut(s)	319, 340
AxyI	CCTNAGG	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	771
BanI	GGYRCC	3 cut(s)	45, 70, 157
BanII	GRGCYC	3 cut(s)	131, 336, 546
Bbv12I	GWGCWC	4 cut(s)	131, 336, 546, 771
BbvI	GCAGC	4 cut(s)	74, 634, 637, 843
BccI	CCATC	3 cut(s)	298, 616, 683
BceAI	ACGGC	2 cut(s)	462, 611
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BciT130I	CCWGG	2 cut(s)	164, 384
BcoDI	GTCTC	1 cut(s)	748
BfoI	RGCGCY	3 cut(s)	92, 161, 188
BglII	AGATCT	1 cut(s)	807
BisI	GCNGC	9 cut(s)	63, 74, 77, 156, 441, 624, 648, 651, 857
BlpI	GCTNAGC	1 cut(s)	579
BlsI	GCNGC	9 cut(s)	64, 75, 78, 157, 442, 625, 649, 652, 858
Bme1390I	CCNGG	2 cut(s)	164, 384
Bme18I	GGWCC	2 cut(s)	319, 340
BmgBI	CACGTC	1 cut(s)	490
BmgT120I	GGNCC	3 cut(s)	245, 319, 340
BmiI	GGNNCC	5 cut(s)	47, 72, 159, 282, 663
BmrFI	CCNGG	2 cut(s)	164, 384
BmsI	GCATC	4 cut(s)	276, 405, 610, 634
BoxI	GACNNNNGTC	1 cut(s)	317
BpmI	CTGGAG	3 cut(s)	50, 197, 605
Bpu10I	CCTNAGC	1 cut(s)	125
Bpu1102I	GCTNAGC	1 cut(s)	579
BpuEI	CTTGAG	3 cut(s)	173, 320, 832
BsaBI	GATNNNNATC	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	162, 163, 400
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 109, 169, 356
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	2 cut(s)	361, 487
Bse21I	CCTNAGG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	395
BseBI	CCWGG	2 cut(s)	164, 384
BseDI	CCNNGG	3 cut(s)	162, 163, 400
BseGI	GGATG	4 cut(s)	237, 290, 396, 508
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	4 cut(s)	55, 109, 169, 356
BseMII	CTCAG	4 cut(s)	116, 218, 570, 815
BseNI	ACTGG	2 cut(s)	361, 487
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	771
BseX3I	CGGCCG	1 cut(s)	624
BseXI	GCAGC	4 cut(s)	74, 634, 637, 843
BsgI	GTGCAG	1 cut(s)	743
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	2 cut(s)	247, 626
BshNI	GGYRCC	3 cut(s)	45, 70, 157
BsiEI	CGRYCG	1 cut(s)	627
BsiHKAI	GWGCWC	4 cut(s)	131, 336, 546, 771
BsiSI	CCGG	1 cut(s)	248
BslFI	GGGAC	3 cut(s)	185, 325, 574
BslI	CCNNNNNNNGG	4 cut(s)	55, 109, 169, 356
BsmAI	GTCTC	1 cut(s)	748
BsmFI	GGGAC	3 cut(s)	185, 325, 574
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	247, 626
Bsp1286I	GDGCHC	4 cut(s)	131, 336, 546, 771
Bsp143I	GATC	1 cut(s)	807
Bsp1720I	GCTNAGC	1 cut(s)	579
BspANI	GGCC	2 cut(s)	247, 626
BspCNI	CTCAG	4 cut(s)	117, 217, 571, 816
BspLI	GGNNCC	5 cut(s)	47, 72, 159, 282, 663
BspT107I	GGYRCC	3 cut(s)	45, 70, 157
BsrBI	CCGCTC	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	361, 487
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	162, 163, 400
BssMI	GATC	1 cut(s)	807
BssNI	GRCGYC	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	164, 384
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	702
BstACI	GRCGYC	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	766
BstC8I	GCNNGC	3 cut(s)	93, 473, 837
BstDEI	CTNAG	4 cut(s)	125, 204, 579, 824
BstDSI	CCRYGG	1 cut(s)	400
BstENI	CCTNNNNNAGG	1 cut(s)	167
BstF5I	GGATG	4 cut(s)	237, 290, 396, 508
BstH2I	RGCGCY	3 cut(s)	92, 161, 188
BstHHI	GCGC	3 cut(s)	91, 160, 187
BstKTI	GATC	1 cut(s)	810
BstMAI	GTCTC	1 cut(s)	748
BstMBI	GATC	1 cut(s)	807
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 40, 393, 446, 623, 766, 836
BstNI	CCWGG	2 cut(s)	164, 384
BstPAI	GACNNNNGTC	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	162, 382
BstSLI	GKGCMC	1 cut(s)	771
BstV1I	GCAGC	4 cut(s)	74, 634, 637, 843
BstX2I	RGATCY	1 cut(s)	807
BstYI	RGATCY	1 cut(s)	807
BstZI	CGGCCG	1 cut(s)	624
Bsu36I	CCTNAGG	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	247, 626
BtgI	CCRYGG	1 cut(s)	400
BtrI	CACGTC	1 cut(s)	490
BtsCI	GGATG	4 cut(s)	237, 290, 396, 508
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	216, 480
Cac8I	GCNNGC	3 cut(s)	93, 473, 837
CfoI	GCGC	3 cut(s)	91, 160, 187
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	3 cut(s)	245, 319, 340
CseI	GACGC	1 cut(s)	786
Csp6I	GTAC	2 cut(s)	21, 46
CspCI	CAANNNNNGTGG	2 cut(s)	720, 755
CviAII	CATG	1 cut(s)	265
CviQI	GTAC	2 cut(s)	21, 46
DdeI	CTNAG	4 cut(s)	125, 204, 579, 824
DinI	GGCGCC	1 cut(s)	159
DpnI	GATC	1 cut(s)	809
DpnII	GATC	1 cut(s)	807
DraIII	CACNNNGTG	1 cut(s)	766
EaeI	YGGCCR	1 cut(s)	624
EagI	CGGCCG	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	702
EciI	GGCGGA	1 cut(s)	128
Ecl136II	GAGCTC	3 cut(s)	129, 334, 544
EclXI	CGGCCG	1 cut(s)	624
Eco24I	GRGCYC	3 cut(s)	131, 336, 546
Eco47I	GGWCC	2 cut(s)	319, 340
Eco47III	AGCGCT	1 cut(s)	90
Eco52I	CGGCCG	1 cut(s)	624
Eco53kI	GAGCTC	3 cut(s)	129, 334, 544
Eco57I	CTGAAG	1 cut(s)	726
Eco81I	CCTNAGG	1 cut(s)	204
EcoICRI	GAGCTC	3 cut(s)	129, 334, 544
EcoNI	CCTNNNNNAGG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	162, 382
EcoT38I	GRGCYC	3 cut(s)	131, 336, 546
EgeI	GGCGCC	1 cut(s)	159
EheI	GGCGCC	1 cut(s)	159
FaeI	CATG	1 cut(s)	268
FaiI	YATR	9 cut(s)	86, 228, 266, 375, 416, 458, 498, 599, 728
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FaqI	GGGAC	3 cut(s)	185, 325, 574
FatI	CATG	1 cut(s)	264
Fnu4HI	GCNGC	9 cut(s)	63, 74, 77, 156, 441, 624, 648, 651, 857
FokI	GGATG	4 cut(s)	244, 277, 383, 515
FriOI	GRGCYC	3 cut(s)	131, 336, 546
Fsp4HI	GCNGC	9 cut(s)	63, 74, 77, 156, 441, 624, 648, 651, 857
GlaI	GCGC	3 cut(s)	90, 159, 186
GluI	GCNGC	9 cut(s)	63, 74, 77, 156, 441, 624, 648, 651, 857
GsuI	CTGGAG	3 cut(s)	50, 197, 605
HaeII	RGCGCY	3 cut(s)	92, 161, 188
HaeIII	GGCC	2 cut(s)	247, 626
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	1 cut(s)	786
HhaI	GCGC	3 cut(s)	91, 160, 187
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	3 cut(s)	89, 158, 185
HinP1I	GCGC	3 cut(s)	89, 158, 185
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	833
HinfI	GANTC	4 cut(s)	37, 198, 534, 587
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	2 cut(s)	497, 668
Hpy166II	GTNNAC	2 cut(s)	529, 769
Hpy188I	TCNGA	2 cut(s)	323, 688
Hpy188III	TCNNGA	6 cut(s)	29, 150, 190, 695, 801, 811
Hpy8I	GTNNAC	2 cut(s)	529, 769
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	2 cut(s)	435, 489
HpyCH4V	TGCA	9 cut(s)	4, 264, 329, 396, 617, 671, 760, 769, 782
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 40, 393, 446, 623, 766, 836
HpyF3I	CTNAG	4 cut(s)	125, 204, 579, 824
HpySE526I	ACGT	2 cut(s)	435, 489
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	3 cut(s)	89, 158, 185
KasI	GGCGCC	1 cut(s)	157
KpnI	GGTACC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	807
LmnI	GCTCC	4 cut(s)	31, 152, 172, 541
Lsp1109I	GCAGC	4 cut(s)	74, 634, 637, 843
LweI	GCATC	4 cut(s)	276, 405, 610, 634
MaeII	ACGT	2 cut(s)	435, 489
MaeIII	GTNAC	2 cut(s)	363, 485
MalI	GATC	1 cut(s)	809
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	1 cut(s)	807
MboII	GAAGA	2 cut(s)	109, 719
MfeI	CAATTG	1 cut(s)	612
MflI	RGATCY	1 cut(s)	807
MhlI	GDGCHC	4 cut(s)	131, 336, 546, 771
MluCI	AATT	5 cut(s)	411, 551, 612, 722, 783
Mly113I	GGCGCC	1 cut(s)	158
MlyI	GAGTC	3 cut(s)	207, 543, 596
MnlI	CCTC	9 cut(s)	172, 175, 213, 232, 460, 508, 602, 652, 703
MslI	CAYNNNNRTG	1 cut(s)	483
MspA1I	CMGCKG	5 cut(s)	43, 65, 79, 578, 856
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	164, 384
MunI	CAATTG	1 cut(s)	612
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	2 cut(s)	164, 384
MwoI	GCNNNNNNNGC	7 cut(s)	31, 40, 393, 446, 623, 766, 836
NarI	GGCGCC	1 cut(s)	158
NdeII	GATC	1 cut(s)	807
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	5 cut(s)	47, 72, 159, 282, 663
NmeAIII	GCCGAG	1 cut(s)	221
NmuCI	GTSAC	2 cut(s)	363, 485
OliI	CACNNNNGTG	1 cut(s)	483
PasI	CCCWGGG	1 cut(s)	163
PctI	GAATGC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	37
PflFI	GACNNNGTC	1 cut(s)	533
PkrI	GCNGC	9 cut(s)	64, 75, 78, 157, 442, 625, 649, 652, 858
PleI	GAGTC	3 cut(s)	206, 542, 595
PluTI	GGCGCC	1 cut(s)	161
PpsI	GAGTC	3 cut(s)	206, 542, 595
PpuMI	RGGWCCY	1 cut(s)	340
PshAI	GACNNNNGTC	1 cut(s)	317
PsiI	TTATAA	1 cut(s)	599
Psp124BI	GAGCTC	3 cut(s)	131, 336, 546
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	162, 382
PspGI	CCWGG	2 cut(s)	162, 382
PspN4I	GGNNCC	5 cut(s)	47, 72, 159, 282, 663
PspPI	GGNCC	3 cut(s)	245, 319, 340
PspPPI	RGGWCCY	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	807
PsyI	GACNNNGTC	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	2 cut(s)	22, 47
RsaNI	GTAC	2 cut(s)	21, 46
RseI	CAYNNNNRTG	1 cut(s)	483
SacI	GAGCTC	3 cut(s)	131, 336, 546
SatI	GCNGC	9 cut(s)	63, 74, 77, 156, 441, 624, 648, 651, 857
Sau3AI	GATC	1 cut(s)	807
Sau96I	GGNCC	3 cut(s)	245, 319, 340
SchI	GAGTC	3 cut(s)	207, 543, 596
ScrFI	CCNGG	2 cut(s)	164, 384
SduI	GDGCHC	4 cut(s)	131, 336, 546, 771
SfaNI	GCATC	4 cut(s)	276, 405, 610, 634
SfoI	GGCGCC	1 cut(s)	159
SinI	GGWCC	2 cut(s)	319, 340
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	3 cut(s)	188, 335, 811
SmoI	CTYRAG	3 cut(s)	188, 335, 811
Sse9I	AATT	5 cut(s)	411, 551, 612, 722, 783
SspDI	GGCGCC	1 cut(s)	157
SstI	GAGCTC	3 cut(s)	131, 336, 546
StyD4I	CCNGG	2 cut(s)	162, 382
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	2 cut(s)	438, 492
TaqII	GACCGA	1 cut(s)	672
TasI	AATT	5 cut(s)	411, 551, 612, 722, 783
TauI	GCSGC	5 cut(s)	76, 79, 158, 443, 626
TfiI	GAWTC	1 cut(s)	37
TscAI	CASTG	2 cut(s)	216, 487
TseFI	GTSAC	2 cut(s)	363, 485
TseI	GCWGC	4 cut(s)	62, 647, 650, 856
Tsp45I	GTSAC	2 cut(s)	363, 485
TspDTI	ATGAA	2 cut(s)	431, 511
TspGWI	ACGGA	4 cut(s)	251, 389, 479, 767
TspRI	CASTG	2 cut(s)	216, 487
Tth111I	GACNNNGTC	1 cut(s)	533
VneI	GTGCAC	1 cut(s)	767
VpaK11BI	GGWCC	2 cut(s)	319, 340
XagI	CCTNNNNNAGG	1 cut(s)	167
XapI	RAATTY	2 cut(s)	551, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.