Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011271.1

Orthogroup ID

OG0008970

Physical Location & Seq

Genomic Coordinates Reverse (-)

571 .. 1104

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011271.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgaactgcttacatttctcagtcctctcagacgccaacgaaaacgaacttccggaggtttccattgatccagaggaccctgtagcgttacctttctcttcaggaactacagggcttccaaaaggagtgattctaactcacaagagtctgatcacaagtgtggctcagcaagtggacggagagaatccaaacctgtacttgaaggaagacgatgtcgttttgtgcgtgctgccattgttccatatctactccttgaacagtgtcttgttgtgttctctcagagcaggggcggcggttttggtaatgcacaagtttgagattgggacgcttttggagctcatacagaagtacagagtgtctgtggcggcggtggtgccaccgctggtgatagcgctggcgaagaatcctatggtggcggactatgatctcagctctattagagcgatcttatccggagcggcgccgctgggaaaggaactagaggaggcgttgaggagccgtgtgcctcaggcggtgttgggccaggtaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009653 GO:0009698 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016207 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019748 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0085029 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

177

Amino Acids

18.98

Weight (kDa)

4.98

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65060 AT1G65060
fragaria_vesca	FvH4_7g33990 FvH4_7g33990
malus_domestica	MD01G1236300.v1.1 MD07G1309000.v1.1
prunus_persica	Prupe.2G326300_v2.0.a1
pyrus_communis	pycom01g24420 pycom07g28100
rosa_chinensis	RchiOBHm_Chr1g0384231
rosa_laevigata	RLG00000026055
rosa_multiflora	Rmu_co8391797.1_g000001 Rmu_sc0011271.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276820
rosa_rugosa	Rorug01G0446000
rosa_samantha	Rh1AG471500 Rh1BG429300 Rh1CG441900 Rh1DG462000 Rh6BG015700 Rh7CG464300
rosa_wichuraiana	Rw1G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	373, 460
AccBSI	CCGCTC	1 cut(s)	458
AccIII	TCCGGA	2 cut(s)	52, 452
AciI	CCGC	9 cut(s)	290, 293, 365, 368, 380, 416, 458, 464, 512
AclWI	GGATC	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	2 cut(s)	33, 461
AfaI	GTAC	2 cut(s)	197, 350
AfeI	AGCGCT	1 cut(s)	393
AgsI	TTSAA	2 cut(s)	202, 256
AjnI	CCWGG	1 cut(s)	522
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	2 cut(s)	337, 432
AluI	AGCT	2 cut(s)	337, 432
Alw21I	GWGCWC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	62
Aor13HI	TCCGGA	2 cut(s)	52, 452
Aor51HI	AGCGCT	1 cut(s)	393
AoxI	GGCC	1 cut(s)	520
ApeKI	GCWGC	1 cut(s)	229
AspLEI	GCGC	2 cut(s)	394, 463
AspS9I	GGNCC	2 cut(s)	76, 520
AsuHPI	GGTGA	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	76
AxyI	CCTNAGG	1 cut(s)	507
BanI	GGYRCC	2 cut(s)	373, 460
BanII	GRGCYC	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	216
BceAI	ACGGC	1 cut(s)	483
BciT130I	CCWGG	1 cut(s)	524
BclI	TGATCA	1 cut(s)	150
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	2 cut(s)	81, 108
BfoI	RGCGCY	2 cut(s)	395, 464
BisI	GCNGC	5 cut(s)	230, 291, 366, 459, 464
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	5 cut(s)	231, 292, 367, 460, 465
Bme1390I	CCNGG	1 cut(s)	524
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	76, 520
BmiI	GGNNCC	4 cut(s)	78, 375, 462, 497
BmrFI	CCNGG	1 cut(s)	524
BpiI	GAAGAC	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	165
BsaHI	GRCGYC	2 cut(s)	33, 461
BsaWI	WCCGGW	2 cut(s)	52, 452
Bse21I	CCTNAGG	1 cut(s)	507
BseAI	TCCGGA	2 cut(s)	52, 452
BseBI	CCWGG	1 cut(s)	524
BseMII	CTCAG	6 cut(s)	33, 42, 179, 292, 442, 521
BseRI	GAGGAG	2 cut(s)	497, 508
BseXI	GCAGC	1 cut(s)	216
BseYI	CCCAGC	1 cut(s)	466
BshFI	GGCC	1 cut(s)	522
BshNI	GGYRCC	2 cut(s)	373, 460
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	2 cut(s)	53, 453
BslFI	GGGAC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	522
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp13I	TCCGGA	2 cut(s)	52, 452
Bsp143I	GATC	4 cut(s)	67, 150, 424, 444
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	9 cut(s)	290, 293, 365, 368, 380, 416, 458, 464, 512
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	6 cut(s)	32, 41, 178, 291, 441, 520
BspEI	TCCGGA	2 cut(s)	52, 452
BspLI	GGNNCC	4 cut(s)	78, 375, 462, 497
BspPI	GGATC	1 cut(s)	62
BspT107I	GGYRCC	2 cut(s)	373, 460
BsrBI	CCGCTC	1 cut(s)	458
BssMI	GATC	4 cut(s)	67, 150, 424, 444
BssNI	GRCGYC	2 cut(s)	33, 461
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	103
BstACI	GRCGYC	2 cut(s)	33, 461
BstC8I	GCNNGC	2 cut(s)	227, 396
BstDEI	CTNAG	6 cut(s)	19, 28, 165, 278, 428, 507
BstH2I	RGCGCY	2 cut(s)	395, 464
BstHHI	GCGC	2 cut(s)	394, 463
BstKTI	GATC	4 cut(s)	70, 153, 427, 447
BstMBI	GATC	4 cut(s)	67, 150, 424, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 334
BstNI	CCWGG	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	522
BstSFI	CTRYAG	2 cut(s)	81, 108
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	522
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	227, 396
CfoI	GCGC	2 cut(s)	394, 463
Cfr13I	GGNCC	2 cut(s)	76, 520
CseI	GACGC	2 cut(s)	41, 334
Csp6I	GTAC	2 cut(s)	196, 349
CviJI	RGCY	6 cut(s)	115, 164, 337, 432, 498, 522
CviKI_1	RGCY	6 cut(s)	115, 164, 337, 432, 498, 522
CviQI	GTAC	2 cut(s)	196, 349
DdeI	CTNAG	6 cut(s)	19, 28, 165, 278, 428, 507
DinI	GGCGCC	1 cut(s)	462
DpnI	GATC	4 cut(s)	69, 152, 426, 446
DpnII	GATC	4 cut(s)	67, 150, 424, 444
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	431
Ecl136II	GAGCTC	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	76
Eco47III	AGCGCT	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	84
Eco81I	CCTNAGG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	339
EgeI	GGCGCC	1 cut(s)	462
EheI	GGCGCC	1 cut(s)	462
FaiI	YATR	4 cut(s)	243, 341, 410, 423
FaqI	GGGAC	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	5 cut(s)	230, 291, 366, 459, 464
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	5 cut(s)	230, 291, 366, 459, 464
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	2 cut(s)	393, 462
GluI	GCNGC	5 cut(s)	230, 291, 366, 459, 464
GsaI	CCCAGC	1 cut(s)	470
HaeII	RGCGCY	2 cut(s)	395, 464
HaeIII	GGCC	1 cut(s)	522
HapII	CCGG	2 cut(s)	53, 453
HgaI	GACGC	2 cut(s)	41, 334
HhaI	GCGC	2 cut(s)	394, 463
Hin1I	GRCGYC	2 cut(s)	33, 461
Hin6I	GCGC	2 cut(s)	392, 461
HinP1I	GCGC	2 cut(s)	392, 461
HinfI	GANTC	4 cut(s)	130, 145, 184, 403
HpaII	CCGG	2 cut(s)	53, 453
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	31, 150, 281
Hpy188III	TCNNGA	4 cut(s)	53, 71, 102, 453
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 334
HpyF3I	CTNAG	6 cut(s)	19, 28, 165, 278, 428, 507
Hsp92I	GRCGYC	2 cut(s)	33, 461
HspAI	GCGC	2 cut(s)	392, 461
KasI	GGCGCC	1 cut(s)	460
Kpn2I	TCCGGA	2 cut(s)	52, 452
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	4 cut(s)	67, 150, 424, 444
LmnI	GCTCC	3 cut(s)	334, 455, 495
Lsp1109I	GCAGC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	479
MaeIII	GTNAC	1 cut(s)	87
MalI	GATC	4 cut(s)	69, 152, 426, 446
MbiI	CCGCTC	1 cut(s)	458
MboI	GATC	4 cut(s)	67, 150, 424, 444
MboII	GAAGA	3 cut(s)	90, 218, 412
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	1 cut(s)	529
Mly113I	GGCGCC	1 cut(s)	461
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	7 cut(s)	35, 49, 67, 475, 478, 486, 516
MroI	TCCGGA	2 cut(s)	52, 452
MseI	TTAA	1 cut(s)	532
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	2 cut(s)	382, 466
MspI	CCGG	2 cut(s)	53, 453
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	2 cut(s)	290, 334
NarI	GGCGCC	1 cut(s)	461
NdeII	GATC	4 cut(s)	67, 150, 424, 444
NlaIV	GGNNCC	4 cut(s)	78, 375, 462, 497
OliI	CACNNNNGTG	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	130, 184, 403
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	5 cut(s)	231, 292, 367, 460, 465
PleI	GAGTC	1 cut(s)	153
PluTI	GGCGCC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	153
PpuMI	RGGWCCY	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	522
PspFI	CCCAGC	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	4 cut(s)	78, 375, 462, 497
PspPI	GGNCC	2 cut(s)	76, 520
PspPPI	RGGWCCY	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	212
RsaI	GTAC	2 cut(s)	197, 350
RsaNI	GTAC	2 cut(s)	196, 349
RseI	CAYNNNNRTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	532
SatI	GCNGC	5 cut(s)	230, 291, 366, 459, 464
Sau3AI	GATC	4 cut(s)	67, 150, 424, 444
Sau96I	GGNCC	2 cut(s)	76, 520
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	6 cut(s)	60, 94, 195, 339, 434, 528
SfcI	CTRYAG	2 cut(s)	81, 108
SfoI	GGCGCC	1 cut(s)	462
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	529
SsiI	CCGC	9 cut(s)	290, 293, 365, 368, 380, 416, 458, 464, 512
SspDI	GGCGCC	1 cut(s)	460
SspMI	CTAG	1 cut(s)	479
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	260
TasI	AATT	1 cut(s)	529
TatI	WGTACW	2 cut(s)	195, 348
TauI	GCSGC	4 cut(s)	293, 368, 461, 466
TfiI	GAWTC	3 cut(s)	130, 184, 403
Tru1I	TTAA	1 cut(s)	532
Tru9I	TTAA	1 cut(s)	532
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	76
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.