Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8391797.1

Orthogroup ID

OG0008970

Physical Location & Seq

Genomic Coordinates Forward (+)

945 .. 1222

Gene Structure 278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8391797.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 278 bp

atgtgcctggcattcgcaaagcaaccgtttccaacgaagtcagggtcatgcggcaccgtggttcgaaatgcagagctcaaagtcatcgaacccgaaactggtcgctccctcggctacaaccagcctggcgagatttgcatccgtggctctcaaattatgaaaggatatttgaacgacgatgaggccacggcaaccaccgtagatgtcgagggatggcttcacaccggcgacgttggctatgtggacgatgacaatgaggttttcatcgttgacagagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009653 GO:0009698 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016207 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019748 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0085029 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

93

Amino Acids

10.14

Weight (kDa)

4.43

Isoelectric Point (pI)

28.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65060 AT1G65060
fragaria_vesca	FvH4_7g33990 FvH4_7g33990
malus_domestica	MD01G1236300.v1.1 MD07G1309000.v1.1
prunus_persica	Prupe.2G326300_v2.0.a1
pyrus_communis	pycom01g24420 pycom07g28100
rosa_chinensis	RchiOBHm_Chr1g0384231
rosa_laevigata	RLG00000026055
rosa_multiflora	Rmu_co8391797.1_g000001 Rmu_sc0011271.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276820
rosa_rugosa	Rorug01G0446000
rosa_samantha	Rh1AG471500 Rh1BG429300 Rh1CG441900 Rh1DG462000 Rh6BG015700 Rh7CG464300
rosa_wichuraiana	Rw1G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AciI	CCGC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	6, 124
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw21I	GWGCWC	1 cut(s)	78
AoxI	GGCC	1 cut(s)	183
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
AsuII	TTCGAA	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	78
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	2 cut(s)	8, 126
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme1390I	CCNGG	2 cut(s)	8, 126
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	8, 126
BmsI	GCATC	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	137
BsaJI	CCNNGG	4 cut(s)	57, 109, 142, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	103
Bse8I	GATNNNNATC	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	8, 126
BseDI	CCNNGG	4 cut(s)	57, 109, 142, 186
BseGI	GGATG	2 cut(s)	138, 218
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	185
Bsp119I	TTCGAA	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	78
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	4 cut(s)	57, 109, 142, 186
Bst2UI	CCWGG	2 cut(s)	8, 126
Bst4CI	ACNGT	3 cut(s)	27, 58, 199
BstBI	TTCGAA	1 cut(s)	64
BstDSI	CCRYGG	3 cut(s)	57, 142, 186
BstF5I	GGATG	2 cut(s)	138, 218
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 135, 144, 234
BstNI	CCWGG	2 cut(s)	8, 126
BstSCI	CCNGG	2 cut(s)	6, 124
BsuRI	GGCC	1 cut(s)	185
BtgI	CCRYGG	3 cut(s)	57, 142, 186
BtsCI	GGATG	2 cut(s)	138, 218
Cfr10I	RCCGGY	1 cut(s)	224
CviAII	CATG	1 cut(s)	48
CviJI	RGCY	7 cut(s)	76, 114, 124, 147, 185, 217, 237
CviKI_1	RGCY	7 cut(s)	76, 114, 124, 147, 185, 217, 237
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	6, 124
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	1 cut(s)	51
FaiI	YATR	3 cut(s)	49, 158, 240
FatI	CATG	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	2 cut(s)	125, 225
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	225
Hin1II	CATG	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HpaII	CCGG	1 cut(s)	225
Hpy166II	GTNNAC	2 cut(s)	244, 271
Hpy8I	GTNNAC	2 cut(s)	244, 271
Hpy99I	CGWCG	2 cut(s)	179, 233
HpyCH4III	ACNGT	3 cut(s)	27, 58, 199
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	71, 138
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 135, 144, 234
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	7 cut(s)	20, 27, 84, 111, 134, 138, 238
LweI	GCATC	1 cut(s)	147
MaeII	ACGT	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	4 cut(s)	119, 175, 202, 250
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	2 cut(s)	8, 126
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	2 cut(s)	8, 126
MwoI	GCNNNNNNNGC	4 cut(s)	111, 135, 144, 234
NlaIII	CATG	1 cut(s)	51
NlaIV	GGNNCC	1 cut(s)	55
NmeAIII	GCCGAG	1 cut(s)	90
NspV	TTCGAA	1 cut(s)	64
PctI	GAATGC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	6, 124
PspGI	CCWGG	2 cut(s)	6, 124
PspN4I	GGNNCC	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	78
SatI	GCNGC	1 cut(s)	52
ScrFI	CCNGG	2 cut(s)	8, 126
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	3 cut(s)	78, 234, 261
SfaNI	GCATC	1 cut(s)	147
SfuI	TTCGAA	1 cut(s)	64
SgrAI	CRCCGGYG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	6, 124
TaaI	ACNGT	3 cut(s)	27, 58, 199
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	3 cut(s)	64, 87, 207
TasI	AATT	1 cut(s)	153
TauI	GCSGC	1 cut(s)	54
TspDTI	ATGAA	2 cut(s)	173, 253
TspGWI	ACGGA	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.