Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008970

Physical Location & Seq

Genomic Coordinates Forward (+)

62004606 .. 62005160

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG464300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGATATCCATTGCCTCTAACAACAACAACTCTGTTGTTGTAGAGACACCGAAAATCTCTGCCACTCTCATCTCTGACGTCATTTTCGCCTCTCAGACCCAACCGGAGAAGCAGCAGCCAACCACCACTCATCATGATCATGTCTTCAAATCTAAGCTTTCGGACCTTCCCAACATCTCCAACCACCTACCTCTCCACACCTACTGCTTCGAAAACATCTCCAACTTCTCCGAACGACCCTGTCTCATCGTCAGCTCCACCGAAAAAACCTATACCTTTTTCAAAACCCACCTCATTTCTCAAAAGACCAGAGCCGGCCTCTCCAAGCTTGGCATCACAAAAGGTGATGTGATCATGATCCTCCTCCCAAACTGTGCCGAGTTCACCTTCGCATTCATGGGAGCTTCCATGATCAGCGCCGTCGCAACTACCACCAACCCCTTCTACACCGCCTCCGAAATCTTCAAGCAATTCAAGGCCTCCAACGCTAAGCTCATCATCACTCAATCCATATACAGAGACAAGCTCCGACACTCCAGTACCAGCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009653 GO:0009698 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016207 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019748 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0085029 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

184

Amino Acids

20.49

Weight (kDa)

8.99

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	71 - 170	1.8e-18	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65060 AT1G65060
fragaria_vesca	FvH4_7g33990 FvH4_7g33990
malus_domestica	MD01G1236300.v1.1 MD07G1309000.v1.1
prunus_persica	Prupe.2G326300_v2.0.a1
pyrus_communis	pycom01g24420 pycom07g28100
rosa_chinensis	RchiOBHm_Chr1g0384231
rosa_laevigata	RLG00000026055
rosa_multiflora	Rmu_co8391797.1_g000001 Rmu_sc0011271.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276820
rosa_rugosa	Rorug01G0446000
rosa_samantha	Rh1AG471500 Rh1BG429300 Rh1CG441900 Rh1DG462000 Rh6BG015700 Rh7CG464300
rosa_wichuraiana	Rw1G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
AciI	CCGC	1 cut(s)	450
AclWI	GGATC	1 cut(s)	352
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	541
AgsI	TTSAA	4 cut(s)	148, 283, 466, 475
AluBI	AGCT	7 cut(s)	157, 255, 328, 404, 493, 526, 546
AluI	AGCT	7 cut(s)	157, 255, 328, 404, 493, 526, 546
Alw26I	GTCTC	3 cut(s)	38, 248, 513
AlwI	GGATC	1 cut(s)	352
AoxI	GGCC	2 cut(s)	316, 477
ApeKI	GCWGC	2 cut(s)	112, 115
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	356, 376
AsuII	TTCGAA	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	163
BaeI	ACNNNNGTAYC	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	124, 127
BceAI	ACGGC	1 cut(s)	404
BclI	TGATCA	3 cut(s)	136, 351, 411
BcoDI	GTCTC	3 cut(s)	38, 248, 513
BfoI	RGCGCY	1 cut(s)	420
BisI	GCNGC	2 cut(s)	113, 116
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	2 cut(s)	114, 117
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	136
BplI	GAGNNNNNCTC	4 cut(s)	303, 335, 510, 542
BpmI	CTGGAG	1 cut(s)	520
Bpu1102I	GCTNAGC	1 cut(s)	489
Bpu14I	TTCGAA	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	437, 467
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	9
Bse8I	GATNNNNATC	1 cut(s)	356
BseJI	GATNNNNATC	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	9
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	124, 127
BshFI	GGCC	2 cut(s)	318, 479
BsiSI	CCGG	2 cut(s)	104, 315
BsmAI	GTCTC	3 cut(s)	38, 248, 513
BsmI	GAATGC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	318, 479
Bsp119I	TTCGAA	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	136, 351, 357, 411
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	1 cut(s)	450
BspANI	GGCC	2 cut(s)	318, 479
BspCNI	CTCAG	1 cut(s)	106
BspHI	TCATGA	2 cut(s)	133, 354
BspPI	GGATC	1 cut(s)	352
BspT104I	TTCGAA	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	537
BssAI	RCCGGY	1 cut(s)	314
BssMI	GATC	4 cut(s)	136, 351, 357, 411
BssNI	GRCGYC	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	374
BstACI	GRCGYC	1 cut(s)	78
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	3 cut(s)	93, 153, 489
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	4 cut(s)	139, 354, 360, 414
BstMAI	GTCTC	3 cut(s)	38, 248, 513
BstMBI	GATC	4 cut(s)	136, 351, 357, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstV1I	GCAGC	2 cut(s)	124, 127
BstV2I	GAAGAC	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	318, 479
Cac8I	GCNNGC	1 cut(s)	316
CciI	TCATGA	2 cut(s)	133, 354
CfoI	GCGC	1 cut(s)	419
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	540
CviAII	CATG	5 cut(s)	134, 140, 355, 397, 409
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	3 cut(s)	93, 153, 489
DpnI	GATC	4 cut(s)	138, 353, 359, 413
DpnII	GATC	4 cut(s)	136, 351, 357, 411
Eco147I	AGGCCT	1 cut(s)	479
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	163
EcoRV	GATATC	1 cut(s)	6
FaeI	CATG	5 cut(s)	137, 143, 358, 400, 412
FaiI	YATR	8 cut(s)	135, 141, 273, 356, 398, 410, 512, 514
FatI	CATG	5 cut(s)	133, 139, 354, 396, 408
FbaI	TGATCA	3 cut(s)	136, 351, 411
Fnu4HI	GCNGC	2 cut(s)	113, 116
Fsp4HI	GCNGC	2 cut(s)	113, 116
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	2 cut(s)	113, 116
GsuI	CTGGAG	1 cut(s)	520
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	318, 479
HapII	CCGG	2 cut(s)	104, 315
HhaI	GCGC	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	5 cut(s)	137, 143, 358, 400, 412
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HindIII	AAGCTT	2 cut(s)	155, 326
HpaII	CCGG	2 cut(s)	104, 315
HphI	GGTGA	2 cut(s)	356, 376
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	6 cut(s)	76, 96, 163, 232, 457, 530
Hpy188III	TCNNGA	2 cut(s)	134, 355
Hpy8I	GTNNAC	1 cut(s)	384
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	3 cut(s)	176, 397, 451
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	3 cut(s)	93, 153, 489
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	5 cut(s)	137, 143, 358, 400, 412
HspAI	GCGC	1 cut(s)	417
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Ksp22I	TGATCA	3 cut(s)	136, 351, 411
Kzo9I	GATC	4 cut(s)	136, 351, 357, 411
LmnI	GCTCC	3 cut(s)	260, 401, 531
LpnPI	CCDG	5 cut(s)	117, 253, 322, 328, 550
Lsp1109I	GCAGC	2 cut(s)	124, 127
LweI	GCATC	1 cut(s)	342
MaeII	ACGT	1 cut(s)	78
MalI	GATC	4 cut(s)	138, 353, 359, 413
MboI	GATC	4 cut(s)	136, 351, 357, 411
MboII	GAAGA	2 cut(s)	136, 454
MluCI	AATT	1 cut(s)	470
MmeI	TCCRAC	4 cut(s)	204, 246, 507, 553
MnlI	CCTC	9 cut(s)	25, 100, 201, 302, 329, 371, 374, 463, 490
MroNI	GCCGGC	1 cut(s)	314
MseI	TTAA	1 cut(s)	553
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	2 cut(s)	104, 315
Mva1269I	GAATGC	1 cut(s)	392
MwoI	GCNNNNNNNGC	1 cut(s)	485
NaeI	GCCGGC	1 cut(s)	316
NdeII	GATC	4 cut(s)	136, 351, 357, 411
NgoMIV	GCCGGC	1 cut(s)	314
NlaIII	CATG	5 cut(s)	137, 143, 358, 400, 412
NmeAIII	GCCGAG	1 cut(s)	403
NspV	TTCGAA	1 cut(s)	210
PagI	TCATGA	2 cut(s)	133, 354
PceI	AGGCCT	1 cut(s)	479
PctI	GAATGC	1 cut(s)	392
PdiI	GCCGGC	1 cut(s)	316
PflFI	GACNNNGTC	1 cut(s)	240
PkrI	GCNGC	2 cut(s)	114, 117
PspPI	GGNCC	1 cut(s)	163
PsyI	GACNNNGTC	1 cut(s)	240
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	553
SatI	GCNGC	2 cut(s)	113, 116
Sau3AI	GATC	4 cut(s)	136, 351, 357, 411
Sau96I	GGNCC	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	342
SfuI	TTCGAA	1 cut(s)	210
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	1 cut(s)	470
SseBI	AGGCCT	1 cut(s)	479
SsiI	CCGC	1 cut(s)	450
StuI	AGGCCT	1 cut(s)	479
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	470
Tru1I	TTAA	1 cut(s)	553
Tru9I	TTAA	1 cut(s)	553
TseI	GCWGC	2 cut(s)	112, 115
TspDTI	ATGAA	1 cut(s)	385
Tth111I	GACNNNGTC	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	163
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.