Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008970

Physical Location & Seq

Genomic Coordinates Forward (+)

54189064 .. 54189880

Gene Structure 817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0446000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCGTCCGGTGATGAAGCTGGTGACATCAACGTGCCGGAAAAAGAGTACGATGAGCTCAAACAAAGCGAGGATCCGGTTACTTCAACCTTCAAGCTCGGCCCCCAAAAGGGCCAAAACCTCAAAACTGTCCACAAATATAATTACATTCCCTTTTGGCAGCTCAACTGCCTCATGGTCATGGTAGTCCTCTCGGCCAGTGGCTTGGTAGGCCCTGAAGACCTGGTTTTTGTTCTCTTCTCAATAATTTACCTCTTCTTCCTCTCGAAATTCGCTTTCCCAAAGCTCACTGATCCTTCGGAAGAGCCCCCGGTGTTCGACCCCGAAAGCTATCTAGTTCGGCTTGGCCCTCTCTTTGGTGGCTTCATAGGCATTGTGCTCCCCCTTGCGTACATTTTTGAAGGGTTCATAGAGGGAGACAAAGAAGGAATCAGGACGGCCGCGCCGCATGTTTTCCTTCTTGCGAGCCAAGTCTTCATGGATGGAGTGGCTTTCAGTGACAGGTTTTCGACTCCAATTAGGGTTTTTGTGCCGGTTTTCTATAATGCCAAGAGGATTTTTACCCTTGTGGATTGGGTTAAGATAGAGTTTTCGAAAGCTGATGGTCAAGAGTATGGTGGATCTGCAAGTGAGAGGAGACTCTTTCTTGGGAGAGTACTCGCTATAGTTAACTTGGTGTTTTGGTCCTACGATCTCTTCTTCTTCTTGTTGCCTGTTTATCTTCCTAGAGCTTTCAGGAAATATTATGCTGCAGCAAAAGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009653 GO:0009698 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016207 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019748 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044237 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0085029 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

255

Amino Acids

28.86

Weight (kDa)

5.21

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7733	PF24867	52 - 249	6.5e-82	Domain of unknown function (DUF7733)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65060 AT1G65060
fragaria_vesca	FvH4_7g33990 FvH4_7g33990
malus_domestica	MD01G1236300.v1.1 MD07G1309000.v1.1
prunus_persica	Prupe.2G326300_v2.0.a1
pyrus_communis	pycom01g24420 pycom07g28100
rosa_chinensis	RchiOBHm_Chr1g0384231
rosa_laevigata	RLG00000026055
rosa_multiflora	Rmu_co8391797.1_g000001 Rmu_sc0011271.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276820
rosa_rugosa	Rorug01G0446000
rosa_samantha	Rh1AG471500 Rh1BG429300 Rh1CG441900 Rh1DG462000 Rh6BG015700 Rh7CG464300
rosa_wichuraiana	Rw1G040100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	443
AciI	CCGC	2 cut(s)	441, 446
AclWI	GGATC	4 cut(s)	68, 81, 287, 628
AcoI	YGGCCR	2 cut(s)	195, 438
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	3 cut(s)	50, 392, 657
AfiI	CCNNNNNNNGG	3 cut(s)	109, 110, 356
AgsI	TTSAA	3 cut(s)	87, 94, 401
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	8 cut(s)	20, 58, 97, 163, 286, 330, 599, 731
AluI	AGCT	8 cut(s)	20, 58, 97, 163, 286, 330, 599, 731
Alw21I	GWGCWC	2 cut(s)	60, 381
Alw26I	GTCTC	2 cut(s)	411, 631
AlwI	GGATC	4 cut(s)	68, 81, 287, 628
AoxI	GGCC	6 cut(s)	100, 112, 195, 211, 346, 438
ApeKI	GCWGC	3 cut(s)	160, 749, 752
ApoI	RAATTY	1 cut(s)	269
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AspLEI	GCGC	1 cut(s)	445
AspS9I	GGNCC	5 cut(s)	101, 112, 212, 347, 684
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	23, 35
AsuII	TTCGAA	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	684
BamHI	GGATCC	1 cut(s)	73
BanII	GRGCYC	2 cut(s)	60, 309
BbsI	GAAGAC	2 cut(s)	225, 466
Bbv12I	GWGCWC	2 cut(s)	60, 381
BbvI	GCAGC	3 cut(s)	172, 736, 764
BccI	CCATC	2 cut(s)	476, 596
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	2 cut(s)	411, 631
BfaI	CTAG	2 cut(s)	335, 726
BfmI	CTRYAG	2 cut(s)	663, 750
BisI	GCNGC	5 cut(s)	161, 441, 446, 750, 753
BlsI	GCNGC	5 cut(s)	162, 442, 447, 751, 754
BmcAI	AGTACT	1 cut(s)	657
Bme1390I	CCNGG	2 cut(s)	224, 311
Bme18I	GGWCC	1 cut(s)	684
BmgT120I	GGNCC	5 cut(s)	101, 112, 212, 347, 684
BmiI	GGNNCC	2 cut(s)	75, 103
BmrFI	CCNGG	2 cut(s)	224, 311
BpiI	GAAGAC	2 cut(s)	225, 466
Bpu14I	TTCGAA	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	2 cut(s)	8, 76
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 110, 356
Bse118I	RCCGGY	1 cut(s)	532
Bse1I	ACTGG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	3 cut(s)	109, 110, 356
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	649
BseX3I	CGGCCG	1 cut(s)	438
BseXI	GCAGC	3 cut(s)	172, 736, 764
Bsh1236I	CGCG	1 cut(s)	443
Bsh1285I	CGRYCG	1 cut(s)	441
BshFI	GGCC	6 cut(s)	102, 114, 197, 213, 348, 440
BsiEI	CGRYCG	1 cut(s)	441
BsiHKAI	GWGCWC	2 cut(s)	60, 381
BsiSI	CCGG	5 cut(s)	9, 38, 77, 311, 533
BslI	CCNNNNNNNGG	3 cut(s)	109, 110, 356
BsmAI	GTCTC	2 cut(s)	411, 631
BsnI	GGCC	6 cut(s)	102, 114, 197, 213, 348, 440
Bsp119I	TTCGAA	1 cut(s)	593
Bsp1286I	GDGCHC	3 cut(s)	60, 309, 381
Bsp143I	GATC	4 cut(s)	73, 292, 620, 691
BspACI	CCGC	2 cut(s)	441, 446
BspANI	GGCC	6 cut(s)	102, 114, 197, 213, 348, 440
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	2 cut(s)	75, 103
BspMAI	CTGCAG	1 cut(s)	754
BspPI	GGATC	4 cut(s)	68, 81, 287, 628
BspQI	GCTCTTC	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	593
BsrFI	RCCGGY	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	532
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	4 cut(s)	73, 292, 620, 691
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	4 cut(s)	242, 260, 297, 701
BstBI	TTCGAA	1 cut(s)	593
BstC8I	GCNNGC	1 cut(s)	466
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	4 cut(s)	76, 295, 623, 694
BstMAI	GTCTC	2 cut(s)	411, 631
BstMBI	GATC	4 cut(s)	73, 292, 620, 691
BstMCI	CGRYCG	1 cut(s)	441
BstMWI	GCNNNNNNNGC	3 cut(s)	210, 369, 758
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	2 cut(s)	222, 309
BstSFI	CTRYAG	2 cut(s)	663, 750
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	3 cut(s)	172, 736, 764
BstV2I	GAAGAC	2 cut(s)	225, 466
BstX2I	RGATCY	2 cut(s)	73, 620
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstYI	RGATCY	2 cut(s)	73, 620
BstZI	CGGCCG	1 cut(s)	438
BsuRI	GGCC	6 cut(s)	102, 114, 197, 213, 348, 440
BtsCI	GGATG	1 cut(s)	487
BtsIMutI	CAGTG	3 cut(s)	205, 288, 502
Cac8I	GCNNGC	1 cut(s)	466
CfoI	GCGC	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	532
Cfr13I	GGNCC	5 cut(s)	101, 112, 212, 347, 684
CsiI	ACCWGGT	1 cut(s)	222
Csp6I	GTAC	3 cut(s)	49, 391, 656
CviAII	CATG	4 cut(s)	175, 181, 449, 478
CviQI	GTAC	3 cut(s)	49, 391, 656
DpnI	GATC	4 cut(s)	75, 294, 622, 693
DpnII	GATC	4 cut(s)	73, 292, 620, 691
EaeI	YGGCCR	2 cut(s)	195, 438
EagI	CGGCCG	1 cut(s)	438
Eam1104I	CTCTTC	4 cut(s)	242, 260, 297, 701
EarI	CTCTTC	4 cut(s)	242, 260, 297, 701
Ecl136II	GAGCTC	1 cut(s)	58
EclXI	CGGCCG	1 cut(s)	438
Eco24I	GRGCYC	2 cut(s)	60, 309
Eco47I	GGWCC	1 cut(s)	684
Eco52I	CGGCCG	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	222
EcoT38I	GRGCYC	2 cut(s)	60, 309
FaeI	CATG	4 cut(s)	178, 184, 452, 481
FatI	CATG	4 cut(s)	174, 180, 448, 477
Fnu4HI	GCNGC	5 cut(s)	161, 441, 446, 750, 753
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	2 cut(s)	60, 309
Fsp4HI	GCNGC	5 cut(s)	161, 441, 446, 750, 753
FspBI	CTAG	2 cut(s)	335, 726
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	5 cut(s)	161, 441, 446, 750, 753
HaeIII	GGCC	6 cut(s)	102, 114, 197, 213, 348, 440
HapII	CCGG	5 cut(s)	9, 38, 77, 311, 533
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	4 cut(s)	178, 184, 452, 481
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	3 cut(s)	429, 511, 639
HpaI	GTTAAC	1 cut(s)	670
HpaII	CCGG	5 cut(s)	9, 38, 77, 311, 533
HphI	GGTGA	2 cut(s)	23, 35
Hpy166II	GTNNAC	2 cut(s)	133, 670
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	4 cut(s)	265, 433, 608, 736
Hpy8I	GTNNAC	2 cut(s)	133, 670
HpyAV	CCTTC	5 cut(s)	100, 306, 395, 419, 467
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	2 cut(s)	626, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	210, 369, 758
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	178, 184, 452, 481
HspAI	GCGC	1 cut(s)	443
KspAI	GTTAAC	1 cut(s)	670
Kzo9I	GATC	4 cut(s)	73, 292, 620, 691
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	384
Lsp1109I	GCAGC	3 cut(s)	172, 736, 764
MabI	ACCWGGT	1 cut(s)	222
MaeI	CTAG	2 cut(s)	335, 726
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	3 cut(s)	23, 79, 497
MalI	GATC	4 cut(s)	75, 294, 622, 693
MboI	GATC	4 cut(s)	73, 292, 620, 691
MflI	RGATCY	2 cut(s)	73, 620
MhlI	GDGCHC	3 cut(s)	60, 309, 381
MluCI	AATT	4 cut(s)	142, 246, 269, 516
MlyI	GAGTC	2 cut(s)	505, 633
MseI	TTAA	2 cut(s)	579, 669
MslI	CAYNNNNRTG	2 cut(s)	32, 179
MspI	CCGG	5 cut(s)	9, 38, 77, 311, 533
MspR9I	CCNGG	2 cut(s)	224, 311
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	3 cut(s)	210, 369, 758
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	4 cut(s)	73, 292, 620, 691
NlaIII	CATG	4 cut(s)	178, 184, 452, 481
NlaIV	GGNNCC	2 cut(s)	75, 103
NmeAIII	GCCGAG	2 cut(s)	78, 173
NmuCI	GTSAC	2 cut(s)	23, 497
NspI	RCATGY	1 cut(s)	452
NspV	TTCGAA	1 cut(s)	593
PciSI	GCTCTTC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	429
PkrI	GCNGC	5 cut(s)	162, 442, 447, 751, 754
PleI	GAGTC	2 cut(s)	505, 633
PpsI	GAGTC	2 cut(s)	505, 633
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	75, 103
PspPI	GGNCC	5 cut(s)	101, 112, 212, 347, 684
PstI	CTGCAG	1 cut(s)	754
PsuI	RGATCY	2 cut(s)	73, 620
RsaI	GTAC	3 cut(s)	50, 392, 657
RsaNI	GTAC	3 cut(s)	49, 391, 656
RseI	CAYNNNNRTG	2 cut(s)	32, 179
SacI	GAGCTC	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	579, 669
SatI	GCNGC	5 cut(s)	161, 441, 446, 750, 753
Sau3AI	GATC	4 cut(s)	73, 292, 620, 691
Sau96I	GGNCC	5 cut(s)	101, 112, 212, 347, 684
ScaI	AGTACT	1 cut(s)	657
SchI	GAGTC	2 cut(s)	505, 633
ScrFI	CCNGG	2 cut(s)	224, 311
SduI	GDGCHC	3 cut(s)	60, 309, 381
SexAI	ACCWGGT	1 cut(s)	222
SfcI	CTRYAG	2 cut(s)	663, 750
SfuI	TTCGAA	1 cut(s)	593
SinI	GGWCC	1 cut(s)	684
SmiMI	CAYNNNNRTG	2 cut(s)	32, 179
Sse9I	AATT	4 cut(s)	142, 246, 269, 516
SsiI	CCGC	2 cut(s)	441, 446
SspI	AATATT	1 cut(s)	743
SspMI	CTAG	2 cut(s)	335, 726
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	222, 309
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	4 cut(s)	266, 318, 509, 593
TasI	AATT	4 cut(s)	142, 246, 269, 516
TatI	WGTACW	1 cut(s)	655
TauI	GCSGC	2 cut(s)	443, 448
TfiI	GAWTC	1 cut(s)	429
Tru1I	TTAA	2 cut(s)	579, 669
Tru9I	TTAA	2 cut(s)	579, 669
TscAI	CASTG	3 cut(s)	205, 295, 502
TseFI	GTSAC	2 cut(s)	23, 497
TseI	GCWGC	3 cut(s)	160, 749, 752
Tsp45I	GTSAC	2 cut(s)	23, 497
TspDTI	ATGAA	4 cut(s)	30, 355, 397, 466
TspRI	CASTG	3 cut(s)	205, 295, 502
VpaK11BI	GGWCC	1 cut(s)	684
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	1 cut(s)	452
XspI	CTAG	2 cut(s)	335, 726
ZrmI	AGTACT	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.