Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009749

Physical Location & Seq

Genomic Coordinates Forward (+)

2412946 .. 2416300

Gene Structure 3355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G032600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCAAAGCCAAGCTCTGTCTCTCTCTTTTTCCTTCTTCAGGTAGCTTTAGCAATCTCGACTTGCGGCGGAAGCAAATCTTGGCACTCAAAGCAGCAAGCTGCCTTCTTCATATTTGGAGACTCTTACTTAGACTCTGGCAACAACAATTACATCAACACCACAACTCTTGACCAGGCCAACTTCTGGCCTTATGGAGAAACCTACTTCAAGTTTCCAACTGGAAGATTCTCCGACGGACGTTTGATGTCAGACTTTATTGCTGAGTATGCTCACCTGCCATTTGTTCCTCCCTTTCTTCAACCGGGCTTTCACCAATATTATGATGGGGTGAATTTTGCATCTTCTGGGGCTGGTGCTCTGGTTGAGACGTTTCAAGGGTCGGTCATTGATCTTAAAACACAACTGAAGTATTATAAGAAGGTAGAGAAGTGGTTCAGACACAAGTTAGGCGATGTTGAAGCCAAAGTGACACTTTCAAGAGCCGTCTACTTGTTTAGCATTGGAACCAACGATTACATCAGCCCTTTCCTAACCAATTCCCCCATATTGAAGTCCTACTCTAAATCACAATATATTGGAATGGTCATTGGCAACTTGACAAGCGTTATCCAAGAAATTTATGCTGGTGGCGGTAGGAAATTTGGGTTCATCAACTTGCCGACCTTGGGTTGTCTTCCGGGCATGAGAATAATCAAGCCAGAAAACAAAGGTAGCTGCTTAGAAGAAGTTTCATCACTTGCCAAGTTACACAACCAAGCTCTCTCCAAACTTCTGATTCAACTAGGAAACCAGTTGGAGGGTTTCAAATATTCACTCTACGACCTGAGCGGGAATCTTAGGCAGAGAACCAGACATCCCTCGGGATATGGTTTCAAGGAAGGAAAAGCAGCATGCTGTGGTACAGGGCAGTATAGAGGGGTGTTCAGCTGTGGAGGAAAAAGAATAGTGAAGGAGTTTGAATTGTGTGAGAATCCAAATGAACATGTGTTCTGGGATTCTCTCCATCTCACTGAAAAGGTCTACAAGCAATTGGCCAATCAAATGTGGAGTGGTCGGCCATGGGACTCCAATGCCACGGGTCTATACAGTCTCAAGGATCTCTTCCTCCAAAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

374

Amino Acids

41.81

Weight (kDa)

9.02

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53920
fragaria_vesca	FvH4_6g35640 FvH4_6g35640 FvH4_6g35640
malus_domestica	MD09G1174500.v1.1 MD17G1152100.v1.1
prunus_persica	Prupe.3G032600_v2.0.a1 Prupe.3G032600_v2.0.a1 Prupe.3G032600_v2.0.a1
pyrus_communis	pycom09g09160 pycom17g14540
rosa_chinensis	RchiOBHm_Chr2g0147631
rosa_laevigata	RLG00000020265
rosa_multiflora	Rmu_sc0001159.1_g000006
rosa_roxburghii	Rroxscaffold_2G00099440
rosa_rugosa	Rorug02G0400400
rosa_samantha	Rh2AG457800 Rh2BG470400 Rh2CG445200 Rh2DG479700
rosa_wichuraiana	Rw2G037420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AarI	CACCTGC	1 cut(s)	285
Acc36I	ACCTGC	1 cut(s)	285
AccB7I	CCANNNNNTGG	1 cut(s)	186
AccBSI	CCGCTC	1 cut(s)	831
AccI	GTMKAC	2 cut(s)	489, 1023
AciI	CCGC	4 cut(s)	66, 69, 633, 831
AclWI	GGATC	1 cut(s)	1107
AcoI	YGGCCR	2 cut(s)	1035, 1058
AcsI	RAATTY	3 cut(s)	334, 618, 641
AcuI	CTGAAG	2 cut(s)	23, 428
AfaI	GTAC	1 cut(s)	904
AfiI	CCNNNNNNNGG	4 cut(s)	40, 186, 668, 799
AflIII	ACRYGT	1 cut(s)	985
AjnI	CCWGG	1 cut(s)	174
AjuI	GAANNNNNNNTTGG	2 cut(s)	64, 96
AloI	GAACNNNNNNTCC	2 cut(s)	841, 873
AluBI	AGCT	7 cut(s)	15, 47, 101, 717, 761, 930, 1116
AluI	AGCT	7 cut(s)	15, 47, 101, 717, 761, 930, 1116
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	4 cut(s)	25, 114, 362, 1097
AlwI	GGATC	1 cut(s)	1107
Ama87I	CYCGRG	1 cut(s)	862
AoxI	GGCC	4 cut(s)	177, 188, 1035, 1058
ApeKI	GCWGC	4 cut(s)	94, 101, 717, 890
ApoI	RAATTY	3 cut(s)	334, 618, 641
Asp700I	GAANNNNTTC	1 cut(s)	434
AsuC2I	CCSGG	2 cut(s)	306, 681
AsuHPI	GGTGA	3 cut(s)	266, 305, 343
AvaI	CYCGRG	1 cut(s)	862
BalI	TGGCCA	1 cut(s)	1037
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	4 cut(s)	88, 106, 704, 902
BccI	CCATC	2 cut(s)	320, 1014
BceAI	ACGGC	1 cut(s)	470
BciT130I	CCWGG	1 cut(s)	176
BcnI	CCSGG	2 cut(s)	306, 681
BcoDI	GTCTC	4 cut(s)	25, 114, 362, 1097
BfaI	CTAG	1 cut(s)	785
BfuAI	ACCTGC	1 cut(s)	285
BisI	GCNGC	5 cut(s)	67, 95, 102, 718, 891
BlsI	GCNGC	5 cut(s)	68, 96, 103, 719, 892
Bme1390I	CCNGG	3 cut(s)	176, 306, 681
BmeT110I	CYCGRG	1 cut(s)	862
BmiI	GGNNCC	1 cut(s)	508
BmrFI	CCNGG	3 cut(s)	176, 306, 681
BmsI	GCATC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	668
Bpu10I	CCTNAGC	1 cut(s)	827
BpuEI	CTTGAG	1 cut(s)	1079
BpuMI	CCSGG	2 cut(s)	306, 681
BsaJI	CCNNGG	4 cut(s)	666, 861, 1061, 1077
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 186, 668, 799
Bse1I	ACTGG	2 cut(s)	226, 793
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	4 cut(s)	666, 861, 1061, 1077
BseGI	GGATG	1 cut(s)	856
BseLI	CCNNNNNNNGG	4 cut(s)	40, 186, 668, 799
BseMII	CTCAG	2 cut(s)	255, 818
BseNI	ACTGG	2 cut(s)	226, 793
BseXI	GCAGC	4 cut(s)	88, 106, 704, 902
BshFI	GGCC	4 cut(s)	179, 190, 1037, 1060
BsiHKAI	GWGCWC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	862
BsiSI	CCGG	2 cut(s)	305, 680
BslFI	GGGAC	1 cut(s)	1079
BslI	CCNNNNNNNGG	4 cut(s)	40, 186, 668, 799
BsmAI	GTCTC	4 cut(s)	25, 114, 362, 1097
BsmBI	CGTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	1079
BsnI	GGCC	4 cut(s)	179, 190, 1037, 1060
BsoBI	CYCGRG	1 cut(s)	862
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	391, 1099
Bsp19I	CCATGG	1 cut(s)	1061
BspACI	CCGC	4 cut(s)	66, 69, 633, 831
BspANI	GGCC	4 cut(s)	179, 190, 1037, 1060
BspCNI	CTCAG	2 cut(s)	256, 819
BspLI	GGNNCC	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	285
BspPI	GGATC	1 cut(s)	1107
BsrBI	CCGCTC	1 cut(s)	831
BsrI	ACTGG	2 cut(s)	226, 793
BssECI	CCNNGG	4 cut(s)	666, 861, 1061, 1077
BssMI	GATC	2 cut(s)	391, 1099
BssT1I	CCWWGG	2 cut(s)	666, 1061
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	1091
Bst6I	CTCTTC	1 cut(s)	1109
BstC8I	GCNNGC	2 cut(s)	99, 895
BstDEI	CTNAG	5 cut(s)	130, 264, 721, 827, 839
BstDSI	CCRYGG	2 cut(s)	1061, 1077
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	856
BstKTI	GATC	2 cut(s)	394, 1102
BstMAI	GTCTC	4 cut(s)	25, 114, 362, 1097
BstMBI	GATC	2 cut(s)	391, 1099
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 91, 269
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	2 cut(s)	897, 989
BstSCI	CCNGG	3 cut(s)	174, 304, 679
BstV1I	GCAGC	4 cut(s)	88, 106, 704, 902
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	1 cut(s)	1099
BstYI	RGATCY	1 cut(s)	1099
BsuRI	GGCC	4 cut(s)	179, 190, 1037, 1060
BtgI	CCRYGG	2 cut(s)	1061, 1077
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	1 cut(s)	856
BtsIMutI	CAGTG	1 cut(s)	1011
BveI	ACCTGC	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	99, 895
Csp6I	GTAC	1 cut(s)	903
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	4 cut(s)	685, 894, 986, 1062
CviQI	GTAC	1 cut(s)	903
DdeI	CTNAG	5 cut(s)	130, 264, 721, 827, 839
DpnI	GATC	2 cut(s)	393, 1101
DpnII	GATC	2 cut(s)	391, 1099
EaeI	YGGCCR	2 cut(s)	1035, 1058
Eam1104I	CTCTTC	1 cut(s)	1109
EarI	CTCTTC	1 cut(s)	1109
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	2 cut(s)	666, 1061
Eco57I	CTGAAG	2 cut(s)	23, 428
Eco88I	CYCGRG	1 cut(s)	862
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	2 cut(s)	666, 1061
ErhI	CCWWGG	2 cut(s)	666, 1061
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	4 cut(s)	688, 897, 989, 1065
FalI	AAGNNNNNCTT	6 cut(s)	64, 96, 459, 491, 1088, 1120
FaqI	GGGAC	1 cut(s)	1079
FatI	CATG	4 cut(s)	684, 893, 985, 1061
FauI	CCCGC	1 cut(s)	824
FblI	GTMKAC	2 cut(s)	489, 1023
Fnu4HI	GCNGC	5 cut(s)	67, 95, 102, 718, 891
FokI	GGATG	1 cut(s)	843
Fsp4HI	GCNGC	5 cut(s)	67, 95, 102, 718, 891
FspBI	CTAG	1 cut(s)	785
GluI	GCNGC	5 cut(s)	67, 95, 102, 718, 891
HaeIII	GGCC	4 cut(s)	179, 190, 1037, 1060
HapII	CCGG	2 cut(s)	305, 680
Hin1II	CATG	4 cut(s)	688, 897, 989, 1065
HindIII	AAGCTT	1 cut(s)	1114
HinfI	GANTC	8 cut(s)	122, 134, 228, 778, 835, 973, 998, 1067
HpaII	CCGG	2 cut(s)	305, 680
HphI	GGTGA	3 cut(s)	266, 305, 343
Hpy166II	GTNNAC	2 cut(s)	490, 1024
Hpy188I	TCNGA	4 cut(s)	235, 253, 440, 777
Hpy188III	TCNNGA	4 cut(s)	58, 170, 480, 864
Hpy8I	GTNNAC	2 cut(s)	490, 1024
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	5 cut(s)	44, 115, 415, 875, 946
HpyCH4III	ACNGT	1 cut(s)	1091
HpyCH4IV	ACGT	2 cut(s)	241, 371
HpyCH4V	TGCA	1 cut(s)	341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 91, 269
HpyF3I	CTNAG	5 cut(s)	130, 264, 721, 827, 839
HpySE526I	ACGT	2 cut(s)	241, 371
Hsp92II	CATG	4 cut(s)	688, 897, 989, 1065
Kzo9I	GATC	2 cut(s)	391, 1099
Lsp1109I	GCAGC	4 cut(s)	88, 106, 704, 902
LweI	GCATC	1 cut(s)	350
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	2 cut(s)	241, 371
MaeIII	GTNAC	2 cut(s)	469, 747
MalI	GATC	2 cut(s)	393, 1101
MbiI	CCGCTC	1 cut(s)	831
MboI	GATC	2 cut(s)	391, 1099
MboII	GAAGA	8 cut(s)	29, 100, 237, 290, 336, 668, 737, 1096
MfeI	CAATTG	1 cut(s)	1031
MflI	RGATCY	1 cut(s)	1099
MhlI	GDGCHC	1 cut(s)	361
MlsI	TGGCCA	1 cut(s)	1037
MluCI	AATT	7 cut(s)	148, 334, 538, 618, 641, 962, 1031
MluNI	TGGCCA	1 cut(s)	1037
MlyI	GAGTC	3 cut(s)	116, 128, 1061
MmeI	TCCRAC	3 cut(s)	242, 258, 777
MnlI	CCTC	6 cut(s)	300, 793, 871, 911, 929, 1118
Mox20I	TGGCCA	1 cut(s)	1037
MroXI	GAANNNNTTC	1 cut(s)	434
MscI	TGGCCA	1 cut(s)	1037
MseI	TTAA	1 cut(s)	396
Msp20I	TGGCCA	1 cut(s)	1037
MspA1I	CMGCKG	1 cut(s)	930
MspI	CCGG	2 cut(s)	305, 680
MspR9I	CCNGG	3 cut(s)	176, 306, 681
MunI	CAATTG	1 cut(s)	1031
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	3 cut(s)	72, 91, 269
NciI	CCSGG	2 cut(s)	306, 681
NcoI	CCATGG	1 cut(s)	1061
NdeII	GATC	2 cut(s)	391, 1099
NlaIII	CATG	4 cut(s)	688, 897, 989, 1065
NlaIV	GGNNCC	1 cut(s)	508
NmuCI	GTSAC	1 cut(s)	469
NspI	RCATGY	2 cut(s)	897, 989
PaeI	GCATGC	1 cut(s)	897
PaqCI	CACCTGC	1 cut(s)	285
PciI	ACATGT	1 cut(s)	985
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	5 cut(s)	228, 778, 835, 973, 998
PflMI	CCANNNNNTGG	1 cut(s)	186
PkrI	GCNGC	5 cut(s)	68, 96, 103, 719, 892
PleI	GAGTC	3 cut(s)	116, 128, 1061
PpsI	GAGTC	3 cut(s)	116, 128, 1061
PscI	ACATGT	1 cut(s)	985
PsiI	TTATAA	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	1099
PvuII	CAGCTG	1 cut(s)	930
RsaI	GTAC	1 cut(s)	904
RsaNI	GTAC	1 cut(s)	903
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	5 cut(s)	67, 95, 102, 718, 891
Sau3AI	GATC	2 cut(s)	391, 1099
SchI	GAGTC	3 cut(s)	116, 128, 1061
ScrFI	CCNGG	3 cut(s)	176, 306, 681
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	1094
SmoI	CTYRAG	1 cut(s)	1094
SphI	GCATGC	1 cut(s)	897
Sse9I	AATT	7 cut(s)	148, 334, 538, 618, 641, 962, 1031
SsiI	CCGC	4 cut(s)	66, 69, 633, 831
SspI	AATATT	2 cut(s)	320, 812
SspMI	CTAG	1 cut(s)	785
StyD4I	CCNGG	3 cut(s)	174, 304, 679
StyI	CCWWGG	2 cut(s)	666, 1061
TaaI	ACNGT	1 cut(s)	1091
TaiI	ACGT	2 cut(s)	244, 374
TaqI	TCGA	1 cut(s)	59
TaqII	GACCGA	1 cut(s)	373
TasI	AATT	7 cut(s)	148, 334, 538, 618, 641, 962, 1031
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	5 cut(s)	228, 778, 835, 973, 998
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	1 cut(s)	1018
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	4 cut(s)	94, 101, 717, 890
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	4 cut(s)	100, 640, 723, 996
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	1018
Van91I	CCANNNNNTGG	1 cut(s)	186
XagI	CCTNNNNNAGG	1 cut(s)	38
XapI	RAATTY	3 cut(s)	334, 618, 641
XceI	RCATGY	2 cut(s)	897, 989
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XmiI	GTMKAC	2 cut(s)	489, 1023
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.