Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009749

Physical Location & Seq

Genomic Coordinates Reverse (-)

12103885 .. 12107726

Gene Structure 3842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g14540.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCGAAGCAAAGCTCTATCTCCCTCGTTTTCTTTCTTCATGCAGCACTACTAATCTCAACTTGTTTTGGAAGCAAATCTTGGCTTTCAAAAAGGCAAGTTGCCTTGTTCATCTTTGGAGACTCTTACTTAGATTCTGGCAACAACAACTACATCAACACTACAACTCTCGACCAAGCAAATTTCTTGCCGTATGGAGAAACCTACTTCAAGTTCCCAACGGGAAGATTCTCCGACGGACGTTTGATGTCAGACTTCATTGCTGAGTACGCTCACCTGCCATTTGTTCCACCCTTTCTTCAACCGGGATTTCGTCAATATTATGGTGGCGCGAATTTCGCATCCGCCGGAGCTGGTGCTCTTGTTGAGACTTTTCAAGGCGAGGTCATTGATCTTAAGAAACAACTGAAGTACCATAAAAAGGTAGAGACCTGGTTCAGAAATAAGTTAGGCGATGTTGAAGCCAAAGTGACACTTTCAAGAGCCGTCTACTTGTTCAGCATTGGAACCAACGATTACATAAGCCCTTTCCTAACCAATCCTCCCATGTTAAAGTCCTACCCTCGCTCACAATACGTCGGAATGGTCATCGGCAACTTGACAAGCGTTATCCAAGAAATTTATGCAGGAGGGGGTAGGAAATTTGGGTTCATCAACTTGCTGGACTCAGGTTGTCTTCCGGGGTTCAGAATAATCAAGCCTGAAAATAATGGTAGCTGCTTAAAAGAGGTTTCATCACTTGCCAAATTACATAACCAAGCACTCTCAAAACTTCTCATTCAACTTGGAAACCAGTTGGAGGGTTTCAAATATTCACTCTACGACTTGAACAGCAATCTTAGACAGAGAATCAGACATCCCTCTAAATACGGTACGTACGTAAATGCACAAAAGCAAATTAGTTGTCTTAATTCAGTTGATCAGGGTAGGCAGGGTTTTAAAGAAGGGAAAACAGCATGCTGTGGGACAGGTGAATTTAGAGGAGTGTTTAGCTGTGGAGGGAAAAGAATAGTGAATGAGTTTGATTTGTGTGAGAATCCAAATGAATATGTGTTTTGGGACTCGTTGCATCTCACTGAAAAGGTCTACAAGCAATTTGCTAATGAAATGTGGAGCGGCCAGCCATGGAACTCCAAGGCCACAAAAGGTCTACACAATCTCAAGAGTCTATTCCGAGACTTGCTTGACTCATGTTTGACGGTTGGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

404

Amino Acids

45.25

Weight (kDa)

9.14

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53920
fragaria_vesca	FvH4_6g35640 FvH4_6g35640 FvH4_6g35640
malus_domestica	MD09G1174500.v1.1 MD17G1152100.v1.1
prunus_persica	Prupe.3G032600_v2.0.a1 Prupe.3G032600_v2.0.a1 Prupe.3G032600_v2.0.a1
pyrus_communis	pycom09g09160 pycom17g14540
rosa_chinensis	RchiOBHm_Chr2g0147631
rosa_laevigata	RLG00000020265
rosa_multiflora	Rmu_sc0001159.1_g000006
rosa_roxburghii	Rroxscaffold_2G00099440
rosa_rugosa	Rorug02G0400400
rosa_samantha	Rh2AG457800 Rh2BG470400 Rh2CG445200 Rh2DG479700
rosa_wichuraiana	Rw2G037420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	285
Acc36I	ACCTGC	1 cut(s)	285
AccBSI	CCGCTC	1 cut(s)	1116
AccI	GTMKAC	3 cut(s)	489, 1086, 1150
AccII	CGCG	1 cut(s)	332
AciI	CCGC	2 cut(s)	345, 1116
AcoI	YGGCCR	1 cut(s)	1117
AcsI	RAATTY	5 cut(s)	181, 334, 618, 641, 974
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	4 cut(s)	269, 413, 874, 878
AfiI	CCNNNNNNNGG	2 cut(s)	421, 799
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	9 cut(s)	90, 211, 302, 377, 461, 480, 782, 808, 829
AjnI	CCWGG	1 cut(s)	431
AjuI	GAANNNNNNNTTGG	2 cut(s)	64, 96
AluBI	AGCT	4 cut(s)	15, 353, 717, 993
AluI	AGCT	4 cut(s)	15, 353, 717, 993
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	4 cut(s)	114, 362, 422, 1170
AoxI	GGCC	2 cut(s)	1117, 1137
ApeKI	GCWGC	2 cut(s)	44, 717
ApoI	RAATTY	5 cut(s)	181, 334, 618, 641, 974
ArsI	GACNNNNNNTTYG	2 cut(s)	889, 921
AspLEI	GCGC	1 cut(s)	332
AsuC2I	CCSGG	2 cut(s)	306, 681
AsuHPI	GGTGA	2 cut(s)	266, 983
BaeI	ACNNNNGTAYC	4 cut(s)	395, 428, 864, 897
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	56, 704
BceAI	ACGGC	2 cut(s)	175, 470
BciT130I	CCWGG	1 cut(s)	433
BclI	TGATCA	1 cut(s)	919
BcnI	CCSGG	2 cut(s)	306, 681
BcoDI	GTCTC	4 cut(s)	114, 362, 422, 1170
BfrI	CTTAAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	285
BisI	GCNGC	3 cut(s)	45, 718, 1117
BlsI	GCNGC	3 cut(s)	46, 719, 1118
Bme1390I	CCNGG	3 cut(s)	306, 433, 681
BmiI	GGNNCC	1 cut(s)	508
BmrFI	CCNGG	3 cut(s)	306, 433, 681
BmsI	GCATC	2 cut(s)	350, 1078
BpiI	GAAGAC	1 cut(s)	668
BpuEI	CTTGAG	1 cut(s)	1145
BpuMI	CCSGG	2 cut(s)	306, 681
BsaAI	YACGTR	2 cut(s)	876, 880
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	680, 1124, 1134
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 799
Bse1I	ACTGG	1 cut(s)	793
Bse3DI	GCAATG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	3 cut(s)	680, 1124, 1134
BseGI	GGATG	2 cut(s)	341, 856
BseLI	CCNNNNNNNGG	2 cut(s)	421, 799
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	255, 681
BseNI	ACTGG	1 cut(s)	793
BseRI	GAGGAG	1 cut(s)	996
BseXI	GCAGC	2 cut(s)	56, 704
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	1119, 1139
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	3 cut(s)	305, 348, 680
BsiWI	CGTACG	1 cut(s)	876
BslFI	GGGAC	2 cut(s)	979, 1073
BslI	CCNNNNNNNGG	2 cut(s)	421, 799
BsmAI	GTCTC	4 cut(s)	114, 362, 422, 1170
BsmFI	GGGAC	2 cut(s)	979, 1073
BsnI	GGCC	2 cut(s)	1119, 1139
Bso31I	GGTCTC	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	391, 919
Bsp19I	CCATGG	1 cut(s)	1124
BspACI	CCGC	2 cut(s)	345, 1116
BspANI	GGCC	2 cut(s)	1119, 1139
BspCNI	CTCAG	2 cut(s)	256, 680
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	285
BspTI	CTTAAG	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	422
BsrBI	CCGCTC	1 cut(s)	1116
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	793
BssECI	CCNNGG	3 cut(s)	680, 1124, 1134
BssMI	GATC	2 cut(s)	391, 919
BssT1I	CCWWGG	2 cut(s)	1124, 1134
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	2 cut(s)	872, 1201
BstAFI	CTTAAG	1 cut(s)	395
BstBAI	YACGTR	2 cut(s)	876, 880
BstC8I	GCNNGC	2 cut(s)	958, 1121
BstDEI	CTNAG	4 cut(s)	130, 264, 667, 839
BstDSI	CCRYGG	1 cut(s)	1124
BstF5I	GGATG	2 cut(s)	341, 856
BstFNI	CGCG	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	2 cut(s)	394, 922
BstMAI	GTCTC	4 cut(s)	114, 362, 422, 1170
BstMBI	GATC	2 cut(s)	391, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 338
BstNI	CCWGG	1 cut(s)	433
BstNSI	RCATGY	1 cut(s)	960
BstSCI	CCNGG	3 cut(s)	304, 431, 679
BstSNI	TACGTA	2 cut(s)	876, 880
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	56, 704
BstV2I	GAAGAC	1 cut(s)	668
BsuRI	GGCC	2 cut(s)	1119, 1139
BtgI	CCRYGG	1 cut(s)	1124
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	341, 856
BtsIMutI	CAGTG	1 cut(s)	1074
BveI	ACCTGC	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	958, 1121
CfoI	GCGC	1 cut(s)	332
CsiI	ACCWGGT	1 cut(s)	431
Csp6I	GTAC	4 cut(s)	268, 412, 873, 877
CviAII	CATG	5 cut(s)	41, 547, 957, 1125, 1191
CviQI	GTAC	4 cut(s)	268, 412, 873, 877
DdeI	CTNAG	4 cut(s)	130, 264, 667, 839
DpnI	GATC	2 cut(s)	393, 921
DpnII	GATC	2 cut(s)	391, 919
DraI	TTTAAA	1 cut(s)	940
EaeI	YGGCCR	1 cut(s)	1117
EciI	GGCGGA	1 cut(s)	334
Eco105I	TACGTA	2 cut(s)	876, 880
Eco130I	CCWWGG	2 cut(s)	1124, 1134
Eco31I	GGTCTC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	2 cut(s)	1124, 1134
ErhI	CCWWGG	2 cut(s)	1124, 1134
FaeI	CATG	5 cut(s)	44, 550, 960, 1128, 1194
FalI	AAGNNNNNCTT	4 cut(s)	64, 96, 459, 491
FaqI	GGGAC	2 cut(s)	979, 1073
FatI	CATG	5 cut(s)	40, 546, 956, 1124, 1190
FbaI	TGATCA	1 cut(s)	919
FblI	GTMKAC	3 cut(s)	489, 1086, 1150
Fnu4HI	GCNGC	3 cut(s)	45, 718, 1117
FokI	GGATG	2 cut(s)	328, 843
Fsp4HI	GCNGC	3 cut(s)	45, 718, 1117
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	3 cut(s)	45, 718, 1117
HaeIII	GGCC	2 cut(s)	1119, 1139
HapII	CCGG	3 cut(s)	305, 348, 680
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	5 cut(s)	44, 550, 960, 1128, 1194
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HinfI	GANTC	9 cut(s)	122, 134, 228, 665, 849, 1036, 1061, 1165, 1187
HpaII	CCGG	3 cut(s)	305, 348, 680
HphI	GGTGA	2 cut(s)	266, 983
Hpy166II	GTNNAC	3 cut(s)	490, 1087, 1151
Hpy188I	TCNGA	7 cut(s)	235, 253, 440, 581, 689, 854, 1175
Hpy188III	TCNNGA	3 cut(s)	170, 480, 1162
Hpy8I	GTNNAC	3 cut(s)	490, 1087, 1151
Hpy99I	CGWCG	2 cut(s)	239, 581
HpyAV	CCTTC	1 cut(s)	938
HpyCH4III	ACNGT	2 cut(s)	872, 1201
HpyCH4IV	ACGT	4 cut(s)	241, 576, 875, 879
HpyCH4V	TGCA	4 cut(s)	44, 626, 887, 1069
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 338
HpyF3I	CTNAG	4 cut(s)	130, 264, 667, 839
HpySE526I	ACGT	4 cut(s)	241, 576, 875, 879
Hsp92II	CATG	5 cut(s)	44, 550, 960, 1128, 1194
HspAI	GCGC	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	919
Kzo9I	GATC	2 cut(s)	391, 919
LmnI	GCTCC	2 cut(s)	350, 1113
Lsp1109I	GCAGC	2 cut(s)	56, 704
LweI	GCATC	2 cut(s)	350, 1078
MabI	ACCWGGT	1 cut(s)	431
MaeII	ACGT	4 cut(s)	241, 576, 875, 879
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	2 cut(s)	393, 921
MbiI	CCGCTC	1 cut(s)	1116
MboI	GATC	2 cut(s)	391, 919
MboII	GAAGA	4 cut(s)	29, 237, 290, 668
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	9 cut(s)	181, 334, 618, 641, 746, 897, 910, 974, 1094
MlyI	GAGTC	5 cut(s)	116, 659, 1055, 1174, 1181
MmeI	TCCRAC	3 cut(s)	258, 559, 777
MseI	TTAA	5 cut(s)	396, 551, 722, 909, 939
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	3 cut(s)	305, 348, 680
MspR9I	CCNGG	3 cut(s)	306, 433, 681
MvaI	CCWGG	1 cut(s)	433
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	269, 338
NciI	CCSGG	2 cut(s)	306, 681
NcoI	CCATGG	1 cut(s)	1124
NdeII	GATC	2 cut(s)	391, 919
NlaIII	CATG	5 cut(s)	44, 550, 960, 1128, 1194
NlaIV	GGNNCC	1 cut(s)	508
NmuCI	GTSAC	1 cut(s)	469
NspI	RCATGY	1 cut(s)	960
PaeI	GCATGC	1 cut(s)	960
PaqCI	CACCTGC	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	876
PfeI	GAWTC	4 cut(s)	134, 228, 849, 1036
Pfl23II	CGTACG	1 cut(s)	876
PkrI	GCNGC	3 cut(s)	46, 719, 1118
PleI	GAGTC	5 cut(s)	116, 659, 1055, 1173, 1181
PpsI	GAGTC	5 cut(s)	116, 659, 1055, 1173, 1181
Ppu21I	YACGTR	2 cut(s)	876, 880
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspLI	CGTACG	1 cut(s)	876
PspN4I	GGNNCC	1 cut(s)	508
RsaI	GTAC	4 cut(s)	269, 413, 874, 878
RsaNI	GTAC	4 cut(s)	268, 412, 873, 877
SaqAI	TTAA	5 cut(s)	396, 551, 722, 909, 939
SatI	GCNGC	3 cut(s)	45, 718, 1117
Sau3AI	GATC	2 cut(s)	391, 919
SchI	GAGTC	5 cut(s)	116, 659, 1055, 1174, 1181
ScrFI	CCNGG	3 cut(s)	306, 433, 681
SduI	GDGCHC	1 cut(s)	361
SexAI	ACCWGGT	1 cut(s)	431
SfaNI	GCATC	2 cut(s)	350, 1078
SmlI	CTYRAG	2 cut(s)	395, 1160
SmoI	CTYRAG	2 cut(s)	395, 1160
SnaBI	TACGTA	2 cut(s)	876, 880
SphI	GCATGC	1 cut(s)	960
Sse9I	AATT	9 cut(s)	181, 334, 618, 641, 746, 897, 910, 974, 1094
SsiI	CCGC	2 cut(s)	345, 1116
SspI	AATATT	2 cut(s)	320, 812
StyD4I	CCNGG	3 cut(s)	304, 431, 679
StyI	CCWWGG	2 cut(s)	1124, 1134
TaaI	ACNGT	2 cut(s)	872, 1201
TaiI	ACGT	4 cut(s)	244, 579, 878, 882
TaqI	TCGA	1 cut(s)	171
TasI	AATT	9 cut(s)	181, 334, 618, 641, 746, 897, 910, 974, 1094
TauI	GCSGC	1 cut(s)	1119
TfiI	GAWTC	4 cut(s)	134, 228, 849, 1036
Tru1I	TTAA	5 cut(s)	396, 551, 722, 909, 939
Tru9I	TTAA	5 cut(s)	396, 551, 722, 909, 939
TscAI	CASTG	1 cut(s)	1081
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	2 cut(s)	44, 717
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	7 cut(s)	29, 100, 247, 640, 723, 1059, 1119
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	1081
Vha464I	CTTAAG	1 cut(s)	395
XapI	RAATTY	5 cut(s)	181, 334, 618, 641, 974
XceI	RCATGY	1 cut(s)	960
XmiI	GTMKAC	3 cut(s)	489, 1086, 1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.