Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001159.1

Orthogroup ID

OG0009749

Physical Location & Seq

Genomic Coordinates Forward (+)

41616 .. 44865

Gene Structure 3250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001159.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atggcaaggcaaagctttgtctacctccttttctttcttcatgtactactaatattttcaagtagttgctttggattaagcaaatcccagcattcagagaagcctcatcatcatcatgaagttgctttcttcatcttcggagactcttacttggatgcaggcaacaacaactacatcaacacttcaactcttgaccaggccaatttcaggccttatggagagacctacttcaagttcccaactggaagattctccgacgggcggttgatgtcggactttattgccgagtatgctcacctgccattgattccgccgtttctgcaaccggggtttcgccagtattccggcggagcgaattttgcatcttctggagctggtgctctggttgagacgtttcaaggctcggtgattgatctgaaaacacaactaagaaattacaagaaggtagagacctggttcagacacaagttgggcgatgctgaagccaaaatggcactgtcaagagccgtctacttgtttaacatcggaaccaacgattacatgagccctttcttgatcgactcccccattttcaagtcccactctcactcagaatacgttggaatggtcattggcaatttgacaaccatcatccaagagatttatgcaggagggggtcgaaaatttgggttcatcaacttgttgagattaggttgtcttccgggcttgagaataatcaaacaagaaaacaatgggagctgcttagaagaagtttcatcacttgccagattacataaccaagctctctccaaagttctcaggaaactaggaagtcagttgaagggttttaaatattcactctacgacttgaaccacaactttagacagagaaccagacatccttctaaatatggttttaaagaaggaaaatcagcatgctgcggaacaggtcagtttcgaggggtgttcagctgtggagggaaaagaatcgtgaaggagtttgagttgtgcgaaaaccctaatgaatatctgttttgggactctttccatctgactgaaaaagtttatagccaattggcttatcaaatgtggagtggggaagatgactctaagcccttgggtctatacaatctgaaggatctcttcagagatttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

378

Amino Acids

43.01

Weight (kDa)

8.97

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53920
fragaria_vesca	FvH4_6g35640 FvH4_6g35640 FvH4_6g35640
malus_domestica	MD09G1174500.v1.1 MD17G1152100.v1.1
prunus_persica	Prupe.3G032600_v2.0.a1 Prupe.3G032600_v2.0.a1 Prupe.3G032600_v2.0.a1
pyrus_communis	pycom09g09160 pycom17g14540
rosa_chinensis	RchiOBHm_Chr2g0147631
rosa_laevigata	RLG00000020265
rosa_multiflora	Rmu_sc0001159.1_g000006
rosa_roxburghii	Rroxscaffold_2G00099440
rosa_rugosa	Rorug02G0400400
rosa_samantha	Rh2AG457800 Rh2BG470400 Rh2CG445200 Rh2DG479700
rosa_wichuraiana	Rw2G037420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	306
Acc36I	ACCTGC	1 cut(s)	306
AccI	GTMKAC	2 cut(s)	21, 510
AciI	CCGC	4 cut(s)	262, 311, 348, 921
AclWI	GGATC	1 cut(s)	1125
AcsI	RAATTY	2 cut(s)	355, 662
AcuI	CTGAAG	3 cut(s)	501, 1108, 1133
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	2 cut(s)	207, 261
AgsI	TTSAA	7 cut(s)	60, 186, 232, 398, 574, 820, 850
AjnI	CCWGG	2 cut(s)	195, 452
AloI	GAACNNNNNNTCC	2 cut(s)	862, 894
AluBI	AGCT	5 cut(s)	15, 374, 738, 782, 951
AluI	AGCT	5 cut(s)	15, 374, 738, 782, 951
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	4 cut(s)	135, 215, 383, 443
AlwI	GGATC	1 cut(s)	1125
AoxI	GGCC	2 cut(s)	198, 209
ApeKI	GCWGC	2 cut(s)	738, 918
ApoI	RAATTY	2 cut(s)	355, 662
AsuC2I	CCSGG	2 cut(s)	327, 702
AsuHPI	GGTGA	2 cut(s)	287, 418
BanII	GRGCYC	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	689
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	2 cut(s)	725, 905
BccI	CCATC	2 cut(s)	635, 1035
BceAI	ACGGC	2 cut(s)	298, 491
BciT130I	CCWGG	2 cut(s)	197, 454
BcnI	CCSGG	2 cut(s)	327, 702
BcoDI	GTCTC	4 cut(s)	135, 215, 383, 443
BfaI	CTAG	1 cut(s)	806
BfuAI	ACCTGC	1 cut(s)	306
BglI	GCCNNNNNGGC	1 cut(s)	491
BisI	GCNGC	2 cut(s)	739, 919
BlsI	GCNGC	2 cut(s)	740, 920
Bme1390I	CCNGG	4 cut(s)	197, 327, 454, 702
BmiI	GGNNCC	1 cut(s)	529
BmrFI	CCNGG	4 cut(s)	197, 327, 454, 702
BmsI	GCATC	3 cut(s)	145, 371, 466
BpiI	GAAGAC	1 cut(s)	689
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	727
BpuMI	CCSGG	2 cut(s)	327, 702
BsaI	GGTCTC	2 cut(s)	215, 443
BsaJI	CCNNGG	2 cut(s)	326, 1095
BsaXI	ACNNNNNCTCC	2 cut(s)	968, 998
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 261
Bse1I	ACTGG	2 cut(s)	247, 337
BseBI	CCWGG	2 cut(s)	197, 454
BseDI	CCNNGG	2 cut(s)	326, 1095
BseGI	GGATG	3 cut(s)	160, 630, 877
BseLI	CCNNNNNNNGG	2 cut(s)	207, 261
BseMII	CTCAG	2 cut(s)	603, 811
BseNI	ACTGG	2 cut(s)	247, 337
BseXI	GCAGC	2 cut(s)	725, 905
BseYI	CCCAGC	1 cut(s)	87
BshFI	GGCC	2 cut(s)	200, 211
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	3 cut(s)	326, 345, 701
BslFI	GGGAC	2 cut(s)	562, 1031
BslI	CCNNNNNNNGG	2 cut(s)	207, 261
BsmAI	GTCTC	4 cut(s)	135, 215, 383, 443
BsmBI	CGTCTC	1 cut(s)	383
BsmFI	GGGAC	2 cut(s)	562, 1031
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	200, 211
Bso31I	GGTCTC	2 cut(s)	215, 443
Bsp1286I	GDGCHC	2 cut(s)	382, 548
Bsp143I	GATC	3 cut(s)	412, 555, 1117
BspACI	CCGC	4 cut(s)	262, 311, 348, 921
BspANI	GGCC	2 cut(s)	200, 211
BspCNI	CTCAG	2 cut(s)	602, 810
BspHI	TCATGA	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	529
BspMI	ACCTGC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	1125
BspTNI	GGTCTC	2 cut(s)	215, 443
BsrI	ACTGG	2 cut(s)	247, 337
BssECI	CCNNGG	2 cut(s)	326, 1095
BssMI	GATC	3 cut(s)	412, 555, 1117
BssT1I	CCWWGG	1 cut(s)	1095
Bst2UI	CCWGG	2 cut(s)	197, 454
Bst4CI	ACNGT	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	1127
BstC8I	GCNNGC	2 cut(s)	160, 916
BstDEI	CTNAG	5 cut(s)	428, 589, 742, 797, 1089
BstF5I	GGATG	3 cut(s)	160, 630, 877
BstKTI	GATC	3 cut(s)	415, 558, 1120
BstMAI	GTCTC	4 cut(s)	135, 215, 383, 443
BstMBI	GATC	3 cut(s)	412, 555, 1117
BstMWI	GCNNNNNNNGC	4 cut(s)	290, 319, 359, 491
BstNI	CCWGG	2 cut(s)	197, 454
BstNSI	RCATGY	1 cut(s)	918
BstSCI	CCNGG	4 cut(s)	195, 325, 452, 700
BstV1I	GCAGC	2 cut(s)	725, 905
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	1 cut(s)	1117
BstYI	RGATCY	1 cut(s)	1117
BsuRI	GGCC	2 cut(s)	200, 211
BtgZI	GCGATG	1 cut(s)	489
BtsCI	GGATG	3 cut(s)	160, 630, 877
BtsIMutI	CAGTG	1 cut(s)	494
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	2 cut(s)	160, 916
CciI	TCATGA	1 cut(s)	115
CsiI	ACCWGGT	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	4 cut(s)	41, 116, 541, 915
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	5 cut(s)	428, 589, 742, 797, 1089
DpnI	GATC	3 cut(s)	414, 557, 1119
DpnII	GATC	3 cut(s)	412, 555, 1117
DraI	TTTAAA	2 cut(s)	829, 898
Eam1104I	CTCTTC	1 cut(s)	1127
EarI	CTCTTC	1 cut(s)	1127
EciI	GGCGGA	2 cut(s)	300, 363
Eco130I	CCWWGG	1 cut(s)	1095
Eco147I	AGGCCT	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	548
Eco31I	GGTCTC	2 cut(s)	215, 443
Eco57I	CTGAAG	3 cut(s)	501, 1108, 1133
EcoRII	CCWGG	2 cut(s)	195, 452
EcoT14I	CCWWGG	1 cut(s)	1095
EcoT38I	GRGCYC	1 cut(s)	548
ErhI	CCWWGG	1 cut(s)	1095
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	4 cut(s)	44, 119, 544, 918
FalI	AAGNNNNNCTT	1 cut(s)	1106
FaqI	GGGAC	2 cut(s)	562, 1031
FatI	CATG	4 cut(s)	40, 115, 540, 914
FblI	GTMKAC	2 cut(s)	21, 510
Fnu4HI	GCNGC	2 cut(s)	739, 919
FokI	GGATG	3 cut(s)	167, 617, 864
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	2 cut(s)	739, 919
FspBI	CTAG	1 cut(s)	806
GluI	GCNGC	2 cut(s)	739, 919
GsaI	CCCAGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	200, 211
HapII	CCGG	3 cut(s)	326, 345, 701
Hin1II	CATG	4 cut(s)	44, 119, 544, 918
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	7 cut(s)	143, 249, 307, 560, 966, 1019, 1085
HpaII	CCGG	3 cut(s)	326, 345, 701
HphI	GGTGA	2 cut(s)	287, 418
Hpy166II	GTNNAC	2 cut(s)	22, 511
Hpy188III	TCNNGA	7 cut(s)	116, 191, 369, 501, 553, 799, 970
Hpy8I	GTNNAC	2 cut(s)	22, 511
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	6 cut(s)	436, 814, 891, 896, 967, 1108
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4IV	ACGT	2 cut(s)	392, 597
HpyCH4V	TGCA	4 cut(s)	158, 322, 362, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	290, 319, 359, 491
HpyF3I	CTNAG	5 cut(s)	428, 589, 742, 797, 1089
HpySE526I	ACGT	2 cut(s)	392, 597
Hsp92II	CATG	4 cut(s)	44, 119, 544, 918
Kzo9I	GATC	3 cut(s)	412, 555, 1117
LmnI	GCTCC	3 cut(s)	350, 371, 735
Lsp1109I	GCAGC	2 cut(s)	725, 905
LweI	GCATC	3 cut(s)	145, 371, 466
MabI	ACCWGGT	1 cut(s)	452
MaeI	CTAG	1 cut(s)	806
MaeII	ACGT	2 cut(s)	392, 597
MalI	GATC	3 cut(s)	414, 557, 1119
MboI	GATC	3 cut(s)	412, 555, 1117
MboII	GAAGA	9 cut(s)	29, 121, 127, 258, 357, 689, 758, 1091, 1114
MfeI	CAATTG	1 cut(s)	1052
MflI	RGATCY	1 cut(s)	1117
MhlI	GDGCHC	2 cut(s)	382, 548
MluCI	AATT	6 cut(s)	202, 355, 433, 616, 662, 1052
MlyI	GAGTC	4 cut(s)	137, 554, 1013, 1079
MmeI	TCCRAC	3 cut(s)	252, 279, 580
MnlI	CCTC	5 cut(s)	35, 114, 644, 932, 950
MseI	TTAA	4 cut(s)	77, 519, 828, 897
MslI	CAYNNNNRTG	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	951
MspI	CCGG	3 cut(s)	326, 345, 701
MspR9I	CCNGG	4 cut(s)	197, 327, 454, 702
MunI	CAATTG	1 cut(s)	1052
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	2 cut(s)	197, 454
MwoI	GCNNNNNNNGC	4 cut(s)	290, 319, 359, 491
NciI	CCSGG	2 cut(s)	327, 702
NdeII	GATC	3 cut(s)	412, 555, 1117
NlaIII	CATG	4 cut(s)	44, 119, 544, 918
NlaIV	GGNNCC	1 cut(s)	529
NmeAIII	GCCGAG	1 cut(s)	310
NspI	RCATGY	1 cut(s)	918
PaeI	GCATGC	1 cut(s)	918
PagI	TCATGA	1 cut(s)	115
PaqCI	CACCTGC	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	531
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	249, 307, 966
PkrI	GCNGC	2 cut(s)	740, 920
PleI	GAGTC	4 cut(s)	137, 554, 1013, 1079
PpsI	GAGTC	4 cut(s)	137, 554, 1013, 1079
Psp6I	CCWGG	2 cut(s)	195, 452
PspFI	CCCAGC	1 cut(s)	87
PspGI	CCWGG	2 cut(s)	195, 452
PspN4I	GGNNCC	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	1117
PvuII	CAGCTG	1 cut(s)	951
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	4 cut(s)	77, 519, 828, 897
SatI	GCNGC	2 cut(s)	739, 919
Sau3AI	GATC	3 cut(s)	412, 555, 1117
SchI	GAGTC	4 cut(s)	137, 554, 1013, 1079
ScrFI	CCNGG	4 cut(s)	197, 327, 454, 702
SduI	GDGCHC	2 cut(s)	382, 548
SexAI	ACCWGGT	1 cut(s)	452
SfaNI	GCATC	3 cut(s)	145, 371, 466
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
SphI	GCATGC	1 cut(s)	918
Sse9I	AATT	6 cut(s)	202, 355, 433, 616, 662, 1052
SseBI	AGGCCT	1 cut(s)	211
SsiI	CCGC	4 cut(s)	262, 311, 348, 921
SspI	AATATT	2 cut(s)	54, 833
SspMI	CTAG	1 cut(s)	806
StuI	AGGCCT	1 cut(s)	211
StyD4I	CCNGG	4 cut(s)	195, 325, 452, 700
StyI	CCWWGG	1 cut(s)	1095
TaaI	ACNGT	1 cut(s)	498
TaiI	ACGT	2 cut(s)	395, 600
TaqI	TCGA	3 cut(s)	558, 658, 937
TasI	AATT	6 cut(s)	202, 355, 433, 616, 662, 1052
TatI	WGTACW	1 cut(s)	43
TfiI	GAWTC	3 cut(s)	249, 307, 966
Tru1I	TTAA	4 cut(s)	77, 519, 828, 897
Tru9I	TTAA	4 cut(s)	77, 519, 828, 897
TscAI	CASTG	1 cut(s)	501
TseI	GCWGC	2 cut(s)	738, 918
TspDTI	ATGAA	6 cut(s)	29, 121, 132, 661, 744, 1017
TspRI	CASTG	1 cut(s)	501
XapI	RAATTY	2 cut(s)	355, 662
XceI	RCATGY	1 cut(s)	918
XmiI	GTMKAC	2 cut(s)	21, 510
XspI	CTAG	1 cut(s)	806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.