Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009749

Physical Location & Seq

Genomic Coordinates Forward (+)

7321498 .. 7323957

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09160.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAAAAGCAAAGTTCTGTCTCCGTCGTTTTGTTTCTTCATGCAGCACTACTGATCTCAACTTGTTTTGGAAGCAAATCCCGGCCTGCAAAAAAACAAGTTGCCTTGTTCATCTTCGGAGACTCTTACTTAGATTCTGGCAACAACAACTACATCAACACTACAACTCTCGACCAAGCAAATTTCTGGCCATATGGAGAAACCTACTTCAAGTTCCCAACTGGAAGATTCTCCGACGGACGTTTGATGTCAGACTTTATTGCTGAGTACGCTCACCTGCCATTTGTTCCACCCTTTCTTCAACCGGGATTTCGCCAATATTATGGTGGCGCGAATTTCGCATCTGCCGGAGCTGGAGCTCTGGTGGAGACTTTTCAAGGCGAGGTCATTAACCTTAAAACACAACTGAAGTATTACAAGAAGGTAGTGACCTGGTTCAGACACAAGTTAGGCGATGTTGAAGCCAAAGTGACATTTTCAAGAGGCGTCTACTTGTTCAACATTGGAACCAACGATTATATAAGCCCTTTCCTAACCAACTCTCCCATGTTAAAGTCCTACTCTCACTCACGATACGTCGAAATGGTTATCGGCAACTTGACGAGCGTCATCCAAGAAATTTATTCAGGAGGGGGTAGGAAATTTGGGTTCATCAATTTGCTGGACTCGGGTTGTCTTCCGGGGGTCAGAATAATCAAGCCTGAAAATAATGGTAGCTGCTTAAAGGAGGTTTCGTCTCTTGCCAAATTACATAACAAAGCTCTCTCCAAACTCCTCATTCAACTTGGAAACCAGTTGGAGGGTTTCAAATATTCACTCTACGACTTAAACAGCAATCTTAGACAGAGAATCAGGCATCCCTCTAAATATGGTTTTAAGGAAGGGAAAACAGCATGTTGCGGAACAGGCCAGTTTAGAGGGGTATTTAGCTGTGGAGGGAAAAGAACAGTGAAGAAGTTTGAGTTGTGTGAGGATCCAAATGAATATGTGTTCTGGGACTCTTTGCATCTCACTGAAAAGGTCTACAAGCAATTTGCTAATGAAATGTGGAGTGGCCGGCCATTGAACTCCAAGTCCACGACAAGTCTATACAGTCTCAAGGATCTCTTCCAAGACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

374

Amino Acids

42.06

Weight (kDa)

9.31

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53920
fragaria_vesca	FvH4_6g35640 FvH4_6g35640 FvH4_6g35640
malus_domestica	MD09G1174500.v1.1 MD17G1152100.v1.1
prunus_persica	Prupe.3G032600_v2.0.a1 Prupe.3G032600_v2.0.a1 Prupe.3G032600_v2.0.a1
pyrus_communis	pycom09g09160 pycom17g14540
rosa_chinensis	RchiOBHm_Chr2g0147631
rosa_laevigata	RLG00000020265
rosa_multiflora	Rmu_sc0001159.1_g000006
rosa_roxburghii	Rroxscaffold_2G00099440
rosa_rugosa	Rorug02G0400400
rosa_samantha	Rh2AG457800 Rh2BG470400 Rh2CG445200 Rh2DG479700
rosa_wichuraiana	Rw2G037420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	285
Acc36I	ACCTGC	1 cut(s)	285
AccI	GTMKAC	2 cut(s)	489, 1023
AccII	CGCG	1 cut(s)	332
AciI	CCGC	1 cut(s)	900
AclWI	GGATC	3 cut(s)	968, 981, 1110
AcoI	YGGCCR	3 cut(s)	188, 1054, 1058
AcsI	RAATTY	4 cut(s)	181, 334, 618, 641
AcuI	CTGAAG	1 cut(s)	428
AcyI	GRCGYC	1 cut(s)	486
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	799
AgsI	TTSAA	9 cut(s)	211, 302, 377, 461, 480, 499, 782, 808, 1066
AjnI	CCWGG	1 cut(s)	431
AloI	GAACNNNNNNTCC	2 cut(s)	1058, 1090
AluBI	AGCT	5 cut(s)	353, 359, 717, 761, 930
AluI	AGCT	5 cut(s)	353, 359, 717, 761, 930
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	5 cut(s)	25, 114, 362, 741, 1100
AlwI	GGATC	3 cut(s)	968, 981, 1110
Ama87I	CYCGRG	1 cut(s)	667
AoxI	GGCC	5 cut(s)	83, 188, 907, 1054, 1058
ApeKI	GCWGC	2 cut(s)	44, 717
ApoI	RAATTY	4 cut(s)	181, 334, 618, 641
AspLEI	GCGC	1 cut(s)	332
AsuC2I	CCSGG	3 cut(s)	82, 306, 681
AsuHPI	GGTGA	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	667
BalI	TGGCCA	1 cut(s)	190
BamHI	GGATCC	1 cut(s)	973
BanII	GRGCYC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	56, 704
BciT130I	CCWGG	1 cut(s)	433
BcnI	CCSGG	3 cut(s)	82, 306, 681
BcoDI	GTCTC	5 cut(s)	25, 114, 362, 741, 1100
BfuAI	ACCTGC	1 cut(s)	285
BisI	GCNGC	2 cut(s)	45, 718
BlsI	GCNGC	2 cut(s)	46, 719
Bme1390I	CCNGG	4 cut(s)	82, 306, 433, 681
BmeT110I	CYCGRG	1 cut(s)	667
BmiI	GGNNCC	2 cut(s)	508, 975
BmrFI	CCNGG	4 cut(s)	82, 306, 433, 681
BmsI	GCATC	3 cut(s)	350, 865, 1015
BoxI	GACNNNNGTC	1 cut(s)	605
BpiI	GAAGAC	1 cut(s)	668
BpmI	CTGGAG	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	1082
BpuMI	CCSGG	3 cut(s)	82, 306, 681
BsaHI	GRCGYC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	680
BsaXI	ACNNNNNCTCC	6 cut(s)	348, 378, 526, 556, 719, 749
Bsc4I	CCNNNNNNNGG	1 cut(s)	799
Bse118I	RCCGGY	1 cut(s)	1056
Bse1I	ACTGG	3 cut(s)	226, 793, 910
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	1 cut(s)	680
BseGI	GGATG	2 cut(s)	609, 856
BseLI	CCNNNNNNNGG	1 cut(s)	799
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	3 cut(s)	226, 793, 910
BseRI	GAGGAG	1 cut(s)	764
BseXI	GCAGC	2 cut(s)	56, 704
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	5 cut(s)	85, 190, 909, 1056, 1060
BsiHKAI	GWGCWC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	667
BsiSI	CCGG	5 cut(s)	82, 305, 348, 680, 1057
BslFI	GGGAC	1 cut(s)	1010
BslI	CCNNNNNNNGG	1 cut(s)	799
BsmAI	GTCTC	5 cut(s)	25, 114, 362, 741, 1100
BsmBI	CGTCTC	1 cut(s)	741
BsmFI	GGGAC	1 cut(s)	1010
BsnI	GGCC	5 cut(s)	85, 190, 909, 1056, 1060
BsoBI	CYCGRG	1 cut(s)	667
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	54, 973, 1102
BspACI	CCGC	1 cut(s)	900
BspANI	GGCC	5 cut(s)	85, 190, 909, 1056, 1060
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	2 cut(s)	508, 975
BspMI	ACCTGC	1 cut(s)	285
BspPI	GGATC	3 cut(s)	968, 981, 1110
BsrFI	RCCGGY	1 cut(s)	1056
BsrI	ACTGG	3 cut(s)	226, 793, 910
BssAI	RCCGGY	1 cut(s)	1056
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	3 cut(s)	54, 973, 1102
BssNI	GRCGYC	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	2 cut(s)	949, 1094
Bst6I	CTCTTC	1 cut(s)	1112
BstACI	GRCGYC	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	87, 1058
BstDEI	CTNAG	3 cut(s)	130, 264, 839
BstF5I	GGATG	2 cut(s)	609, 856
BstFNI	CGCG	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	3 cut(s)	57, 976, 1105
BstMAI	GTCTC	5 cut(s)	25, 114, 362, 741, 1100
BstMBI	GATC	3 cut(s)	54, 973, 1102
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 338, 906
BstNI	CCWGG	1 cut(s)	433
BstNSI	RCATGY	1 cut(s)	897
BstPAI	GACNNNNGTC	1 cut(s)	605
BstSCI	CCNGG	4 cut(s)	80, 304, 431, 679
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	56, 704
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	2 cut(s)	973, 1102
BstXI	CCANNNNNNTGG	1 cut(s)	323
BstYI	RGATCY	2 cut(s)	973, 1102
BsuRI	GGCC	5 cut(s)	85, 190, 909, 1056, 1060
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	609, 856
BtsIMutI	CAGTG	2 cut(s)	954, 1011
BveI	ACCTGC	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	87, 1058
CfoI	GCGC	1 cut(s)	332
Cfr10I	RCCGGY	1 cut(s)	1056
CseI	GACGC	2 cut(s)	475, 595
CsiI	ACCWGGT	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	3 cut(s)	41, 547, 894
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	3 cut(s)	130, 264, 839
DpnI	GATC	3 cut(s)	56, 975, 1104
DpnII	GATC	3 cut(s)	54, 973, 1102
EaeI	YGGCCR	3 cut(s)	188, 1054, 1058
Eam1104I	CTCTTC	1 cut(s)	1112
EarI	CTCTTC	1 cut(s)	1112
Ecl136II	GAGCTC	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	667
EcoICRI	GAGCTC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	361
Esp3I	CGTCTC	1 cut(s)	741
FaeI	CATG	3 cut(s)	44, 550, 897
FalI	AAGNNNNNCTT	1 cut(s)	1091
FaqI	GGGAC	1 cut(s)	1010
FatI	CATG	3 cut(s)	40, 546, 893
FauNDI	CATATG	1 cut(s)	193
FblI	GTMKAC	2 cut(s)	489, 1023
Fnu4HI	GCNGC	2 cut(s)	45, 718
FokI	GGATG	2 cut(s)	596, 843
FriOI	GRGCYC	1 cut(s)	361
FseI	GGCCGGCC	1 cut(s)	1060
Fsp4HI	GCNGC	2 cut(s)	45, 718
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	2 cut(s)	45, 718
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	5 cut(s)	85, 190, 909, 1056, 1060
HapII	CCGG	5 cut(s)	82, 305, 348, 680, 1057
HgaI	GACGC	2 cut(s)	475, 595
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	3 cut(s)	44, 550, 897
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HinfI	GANTC	6 cut(s)	122, 134, 228, 665, 849, 998
HpaII	CCGG	5 cut(s)	82, 305, 348, 680, 1057
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	3 cut(s)	490, 1024, 1077
Hpy188I	TCNGA	5 cut(s)	119, 235, 253, 440, 689
Hpy188III	TCNNGA	4 cut(s)	170, 480, 570, 627
Hpy8I	GTNNAC	3 cut(s)	490, 1024, 1077
Hpy99I	CGWCG	3 cut(s)	29, 239, 581
HpyAV	CCTTC	2 cut(s)	415, 875
HpyCH4III	ACNGT	2 cut(s)	949, 1094
HpyCH4IV	ACGT	2 cut(s)	241, 576
HpyCH4V	TGCA	3 cut(s)	44, 89, 1006
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 338, 906
HpyF3I	CTNAG	3 cut(s)	130, 264, 839
HpySE526I	ACGT	2 cut(s)	241, 576
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	3 cut(s)	44, 550, 897
HspAI	GCGC	1 cut(s)	330
KroI	GCCGGC	1 cut(s)	1056
KroNI	GCCGGC	1 cut(s)	1058
Kzo9I	GATC	3 cut(s)	54, 973, 1102
LmnI	GCTCC	2 cut(s)	350, 356
Lsp1109I	GCAGC	2 cut(s)	56, 704
LweI	GCATC	3 cut(s)	350, 865, 1015
MabI	ACCWGGT	1 cut(s)	431
MaeII	ACGT	2 cut(s)	241, 576
MaeIII	GTNAC	2 cut(s)	427, 469
MalI	GATC	3 cut(s)	56, 975, 1104
MboI	GATC	3 cut(s)	54, 973, 1102
MboII	GAAGA	7 cut(s)	29, 106, 237, 290, 668, 964, 1099
MflI	RGATCY	2 cut(s)	973, 1102
MhlI	GDGCHC	1 cut(s)	361
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	7 cut(s)	181, 334, 618, 641, 655, 746, 1031
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	3 cut(s)	116, 659, 992
MmeI	TCCRAC	2 cut(s)	258, 777
Mox20I	TGGCCA	1 cut(s)	190
MroNI	GCCGGC	1 cut(s)	1056
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	6 cut(s)	390, 396, 551, 722, 827, 876
Msp20I	TGGCCA	1 cut(s)	190
MspI	CCGG	5 cut(s)	82, 305, 348, 680, 1057
MspR9I	CCNGG	4 cut(s)	82, 306, 433, 681
MvaI	CCWGG	1 cut(s)	433
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	3 cut(s)	269, 338, 906
NaeI	GCCGGC	1 cut(s)	1058
NciI	CCSGG	3 cut(s)	82, 306, 681
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	3 cut(s)	54, 973, 1102
NgoMIV	GCCGGC	1 cut(s)	1056
NlaIII	CATG	3 cut(s)	44, 550, 897
NlaIV	GGNNCC	2 cut(s)	508, 975
NmuCI	GTSAC	2 cut(s)	427, 469
NspI	RCATGY	1 cut(s)	897
PaqCI	CACCTGC	1 cut(s)	285
PdiI	GCCGGC	1 cut(s)	1058
PfeI	GAWTC	3 cut(s)	134, 228, 849
PkrI	GCNGC	2 cut(s)	46, 719
PleI	GAGTC	3 cut(s)	116, 659, 992
PpsI	GAGTC	3 cut(s)	116, 659, 992
PshAI	GACNNNNGTC	1 cut(s)	605
Psp124BI	GAGCTC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	2 cut(s)	508, 975
PsuI	RGATCY	2 cut(s)	973, 1102
RigI	GGCCGGCC	1 cut(s)	1060
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SacI	GAGCTC	1 cut(s)	361
SaqAI	TTAA	6 cut(s)	390, 396, 551, 722, 827, 876
SatI	GCNGC	2 cut(s)	45, 718
Sau3AI	GATC	3 cut(s)	54, 973, 1102
SchI	GAGTC	3 cut(s)	116, 659, 992
ScrFI	CCNGG	4 cut(s)	82, 306, 433, 681
SduI	GDGCHC	1 cut(s)	361
SexAI	ACCWGGT	1 cut(s)	431
SfaNI	GCATC	3 cut(s)	350, 865, 1015
SmlI	CTYRAG	1 cut(s)	1097
SmoI	CTYRAG	1 cut(s)	1097
Sse9I	AATT	7 cut(s)	181, 334, 618, 641, 655, 746, 1031
SsiI	CCGC	1 cut(s)	900
SspI	AATATT	2 cut(s)	320, 812
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	4 cut(s)	80, 304, 431, 679
TaaI	ACNGT	2 cut(s)	949, 1094
TaiI	ACGT	2 cut(s)	244, 579
TaqI	TCGA	2 cut(s)	171, 579
TasI	AATT	7 cut(s)	181, 334, 618, 641, 655, 746, 1031
TfiI	GAWTC	3 cut(s)	134, 228, 849
Tru1I	TTAA	6 cut(s)	390, 396, 551, 722, 827, 876
Tru9I	TTAA	6 cut(s)	390, 396, 551, 722, 827, 876
TscAI	CASTG	2 cut(s)	954, 1018
TseFI	GTSAC	2 cut(s)	427, 469
TseI	GCWGC	2 cut(s)	44, 717
Tsp45I	GTSAC	2 cut(s)	427, 469
TspDTI	ATGAA	5 cut(s)	29, 100, 640, 996, 1056
TspGWI	ACGGA	2 cut(s)	13, 252
TspRI	CASTG	2 cut(s)	954, 1018
XapI	RAATTY	4 cut(s)	181, 334, 618, 641
XceI	RCATGY	1 cut(s)	897
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XmiI	GTMKAC	2 cut(s)	489, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.