ATP-dependent zinc metalloprotease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16290 |
| fragaria_vesca | FvH4_6g32150 FvH4_6g32150 FvH4_6g32150 |
| malus_domestica | MD09G1206000.v1.1 |
| prunus_persica | Prupe.3G061400_v2.0.a1 Prupe.3G065400_v2.0.a1 |
| pyrus_communis | pycom09g12280 |
| rosa_chinensis | RchiOBHm_Chr2g0140041 |
| rosa_laevigata | RLG00000019844 |
| rosa_multiflora | Rmu_co8464017.1_g000001 Rmu_co8471751.1_g000001 Rmu_sc0010982.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00105120 |
| rosa_rugosa | Rorug02G0360600 Rorug02G0360700 |
| rosa_samantha | Rh2AG411300 Rh2BG421500 Rh2CG397400 Rh2DG431000 |
| rosa_wichuraiana | Rw2G033690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 2212 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 897 |
| AccBSI | CCGCTC | 1 cut(s) | 218 |
| AclWI | GGATC | 6 cut(s) | 1264, 1697, 2138, 2151, 2199, 2256 |
| AcoI | YGGCCR | 3 cut(s) | 596, 638, 888 |
| AcsI | RAATTY | 3 cut(s) | 360, 1779, 2510 |
| AcuI | CTGAAG | 1 cut(s) | 1836 |
| AcvI | CACGTG | 1 cut(s) | 2219 |
| AcyI | GRCGYC | 1 cut(s) | 1422 |
| AdeI | CACNNNGTG | 1 cut(s) | 2219 |
| AfaI | GTAC | 3 cut(s) | 368, 617, 2260 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 620, 897, 1379, 1757, 2108, 2386, 2633 |
| AflIII | ACRYGT | 2 cut(s) | 409, 2409 |
| AjiI | CACGTC | 1 cut(s) | 1822 |
| AjnI | CCWGG | 7 cut(s) | 390, 424, 1345, 1372, 1720, 1756, 2187 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 161, 193, 2495, 2527 |
| Alw21I | GWGCWC | 3 cut(s) | 321, 1195, 1498 |
| Alw26I | GTCTC | 1 cut(s) | 355 |
| AlwI | GGATC | 6 cut(s) | 1264, 1697, 2138, 2151, 2199, 2256 |
| Ama87I | CYCGRG | 1 cut(s) | 1179 |
| ApeKI | GCWGC | 4 cut(s) | 1207, 1955, 2222, 2579 |
| ApoI | RAATTY | 3 cut(s) | 360, 1779, 2510 |
| AseI | ATTAAT | 1 cut(s) | 2028 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2594 |
| AspLEI | GCGC | 1 cut(s) | 937 |
| AspS9I | GGNCC | 6 cut(s) | 330, 790, 900, 969, 1367, 1789 |
| AsuHPI | GGTGA | 7 cut(s) | 603, 1106, 1139, 1325, 1424, 1670, 2255 |
| AsuNHI | GCTAGC | 1 cut(s) | 1873 |
| AvaI | CYCGRG | 1 cut(s) | 1179 |
| AvaII | GGWCC | 3 cut(s) | 330, 969, 1789 |
| BaeGI | GKGCMC | 1 cut(s) | 273 |
| BalI | TGGCCA | 1 cut(s) | 890 |
| BamHI | GGATCC | 1 cut(s) | 2143 |
| BanI | GGYRCC | 1 cut(s) | 2212 |
| BanII | GRGCYC | 5 cut(s) | 26, 321, 456, 1180, 1195 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1990, 2022 |
| BauI | CACGAG | 1 cut(s) | 1485 |
| BbrPI | CACGTG | 1 cut(s) | 2219 |
| BbsI | GAAGAC | 2 cut(s) | 1528, 1824 |
| Bbv12I | GWGCWC | 3 cut(s) | 321, 1195, 1498 |
| BbvI | GCAGC | 4 cut(s) | 1194, 1942, 2234, 2566 |
| BccI | CCATC | 7 cut(s) | 109, 880, 1072, 1534, 1634, 1847, 1910 |
| BceAI | ACGGC | 3 cut(s) | 233, 611, 2292 |
| BciT130I | CCWGG | 7 cut(s) | 392, 426, 1347, 1374, 1722, 1758, 2189 |
| BciVI | GTATCC | 1 cut(s) | 1347 |
| BclI | TGATCA | 2 cut(s) | 1578, 1665 |
| BcoDI | GTCTC | 1 cut(s) | 355 |
| BfaI | CTAG | 7 cut(s) | 1700, 1842, 1874, 2103, 2289, 2522, 2559 |
| BfmI | CTRYAG | 2 cut(s) | 1404, 2515 |
| BfuI | GTATCC | 1 cut(s) | 1347 |
| BglI | GCCNNNNNGGC | 4 cut(s) | 21, 788, 908, 2042 |
| BmcAI | AGTACT | 1 cut(s) | 2260 |
| Bme1390I | CCNGG | 7 cut(s) | 392, 426, 1347, 1374, 1722, 1758, 2189 |
| Bme18I | GGWCC | 3 cut(s) | 330, 969, 1789 |
| BmeT110I | CYCGRG | 1 cut(s) | 1179 |
| BmgBI | CACGTC | 1 cut(s) | 1822 |
| BmgT120I | GGNCC | 6 cut(s) | 330, 790, 900, 969, 1367, 1789 |
| BmiI | GGNNCC | 5 cut(s) | 332, 606, 2145, 2214, 2625 |
| BmrFI | CCNGG | 7 cut(s) | 392, 426, 1347, 1374, 1722, 1758, 2189 |
| BmsI | GCATC | 5 cut(s) | 1490, 1543, 1597, 1899, 2452 |
| BmtI | GCTAGC | 1 cut(s) | 1877 |
| BpiI | GAAGAC | 2 cut(s) | 1528, 1824 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1195, 1227 |
| BpmI | CTGGAG | 3 cut(s) | 305, 902, 1395 |
| Bpu10I | CCTNAGC | 2 cut(s) | 912, 1752 |
| BpuEI | CTTGAG | 4 cut(s) | 167, 764, 1298, 1304 |
| Bsa29I | ATCGAT | 1 cut(s) | 774 |
| BsaAI | YACGTR | 2 cut(s) | 869, 2219 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1745 |
| BsaHI | GRCGYC | 1 cut(s) | 1422 |
| BsaJI | CCNNGG | 3 cut(s) | 129, 334, 1261 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 593, 623, 2083, 2113 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 620, 897, 1379, 1757, 2108, 2386, 2633 |
| Bse118I | RCCGGY | 2 cut(s) | 236, 640 |
| Bse1I | ACTGG | 3 cut(s) | 322, 948, 2214 |
| Bse3DI | GCAATG | 2 cut(s) | 854, 2393 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1745 |
| BseBI | CCWGG | 7 cut(s) | 392, 426, 1347, 1374, 1722, 1758, 2189 |
| BseCI | ATCGAT | 1 cut(s) | 774 |
| BseDI | CCNNGG | 3 cut(s) | 129, 334, 1261 |
| BseGI | GGATG | 8 cut(s) | 101, 139, 1240, 1255, 1558, 1645, 2467, 2479 |
| BseJI | GATNNNNATC | 1 cut(s) | 1745 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 620, 897, 1379, 1757, 2108, 2386, 2633 |
| BseMI | GCAATG | 2 cut(s) | 854, 2393 |
| BseMII | CTCAG | 4 cut(s) | 926, 1226, 1463, 1917 |
| BseNI | ACTGG | 3 cut(s) | 322, 948, 2214 |
| BseSI | GKGCMC | 1 cut(s) | 273 |
| BseX3I | CGGCCG | 1 cut(s) | 596 |
| BseXI | GCAGC | 4 cut(s) | 1194, 1942, 2234, 2566 |
| BseYI | CCCAGC | 1 cut(s) | 372 |
| BsgI | GTGCAG | 3 cut(s) | 1887, 1941, 2241 |
| Bsh1285I | CGRYCG | 1 cut(s) | 599 |
| BshNI | GGYRCC | 1 cut(s) | 2212 |
| BshVI | ATCGAT | 1 cut(s) | 774 |
| BsiEI | CGRYCG | 1 cut(s) | 599 |
| BsiHKAI | GWGCWC | 3 cut(s) | 321, 1195, 1498 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1179 |
| BsiSI | CCGG | 4 cut(s) | 237, 599, 641, 1273 |
| BslFI | GGGAC | 1 cut(s) | 316 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 620, 897, 1379, 1757, 2108, 2386, 2633 |
| BsmAI | GTCTC | 1 cut(s) | 355 |
| BsmBI | CGTCTC | 1 cut(s) | 355 |
| BsmFI | GGGAC | 1 cut(s) | 316 |
| BsmI | GAATGC | 2 cut(s) | 1983, 2172 |
| BsoBI | CYCGRG | 1 cut(s) | 1179 |
| Bsp1286I | GDGCHC | 7 cut(s) | 26, 273, 321, 456, 1180, 1195, 1498 |
| BspCNI | CTCAG | 4 cut(s) | 925, 1225, 1462, 1918 |
| BspDI | ATCGAT | 1 cut(s) | 774 |
| BspHI | TCATGA | 1 cut(s) | 1164 |
| BspLI | GGNNCC | 5 cut(s) | 332, 606, 2145, 2214, 2625 |
| BspOI | GCTAGC | 1 cut(s) | 1877 |
| BspPI | GGATC | 6 cut(s) | 1264, 1697, 2138, 2151, 2199, 2256 |
| BspT107I | GGYRCC | 1 cut(s) | 2212 |
| BsrBI | CCGCTC | 1 cut(s) | 218 |
| BsrDI | GCAATG | 2 cut(s) | 854, 2393 |
| BsrFI | RCCGGY | 2 cut(s) | 236, 640 |
| BsrI | ACTGG | 3 cut(s) | 322, 948, 2214 |
| BssAI | RCCGGY | 2 cut(s) | 236, 640 |
| BssECI | CCNNGG | 3 cut(s) | 129, 334, 1261 |
| BssNI | GRCGYC | 1 cut(s) | 1422 |
| BssSI | CACGAG | 1 cut(s) | 1485 |
| BssT1I | CCWWGG | 2 cut(s) | 334, 1261 |
| Bst2BI | CACGAG | 1 cut(s) | 1485 |
| Bst2UI | CCWGG | 7 cut(s) | 392, 426, 1347, 1374, 1722, 1758, 2189 |
| Bst4CI | ACNGT | 6 cut(s) | 205, 496, 615, 973, 1728, 2203 |
| Bst6I | CTCTTC | 4 cut(s) | 537, 1324, 1648, 2486 |
| BstACI | GRCGYC | 1 cut(s) | 1422 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2219, 2285 |
| BstBAI | YACGTR | 2 cut(s) | 869, 2219 |
| BstC8I | GCNNGC | 8 cut(s) | 7, 642, 1258, 1395, 1420, 1798, 1875, 2110 |
| BstDEI | CTNAG | 5 cut(s) | 912, 1212, 1449, 1752, 1926 |
| BstDSI | CCRYGG | 1 cut(s) | 129 |
| BstF5I | GGATG | 8 cut(s) | 101, 139, 1240, 1255, 1558, 1645, 2467, 2479 |
| BstHHI | GCGC | 1 cut(s) | 937 |
| BstMAI | GTCTC | 1 cut(s) | 355 |
| BstMCI | CGRYCG | 1 cut(s) | 599 |
| BstNI | CCWGG | 7 cut(s) | 392, 426, 1347, 1374, 1722, 1758, 2189 |
| BstNSI | RCATGY | 2 cut(s) | 413, 2413 |
| BstSCI | CCNGG | 7 cut(s) | 390, 424, 1345, 1372, 1720, 1756, 2187 |
| BstSFI | CTRYAG | 2 cut(s) | 1404, 2515 |
| BstSLI | GKGCMC | 1 cut(s) | 273 |
| BstV1I | GCAGC | 4 cut(s) | 1194, 1942, 2234, 2566 |
| BstV2I | GAAGAC | 2 cut(s) | 1528, 1824 |
| BstX2I | RGATCY | 3 cut(s) | 1269, 1702, 2143 |
| BstYI | RGATCY | 3 cut(s) | 1269, 1702, 2143 |
| BstZI | CGGCCG | 1 cut(s) | 596 |
| Bsu15I | ATCGAT | 1 cut(s) | 774 |
| BsuI | GTATCC | 1 cut(s) | 1347 |
| BsuTUI | ATCGAT | 1 cut(s) | 774 |
| BtgI | CCRYGG | 1 cut(s) | 129 |
| BtrI | CACGTC | 1 cut(s) | 1822 |
| BtsCI | GGATG | 8 cut(s) | 101, 139, 1240, 1255, 1558, 1645, 2467, 2479 |
| BtsI | GCAGTG | 1 cut(s) | 930 |
| BtsIMutI | CAGTG | 3 cut(s) | 201, 930, 2199 |
| Cac8I | GCNNGC | 8 cut(s) | 7, 642, 1258, 1395, 1420, 1798, 1875, 2110 |
| CciI | TCATGA | 1 cut(s) | 1164 |
| CfoI | GCGC | 1 cut(s) | 937 |
| Cfr10I | RCCGGY | 2 cut(s) | 236, 640 |
| Cfr13I | GGNCC | 6 cut(s) | 330, 790, 900, 969, 1367, 1789 |
| ClaI | ATCGAT | 1 cut(s) | 774 |
| CseI | GACGC | 4 cut(s) | 556, 733, 848, 1411 |
| CsiI | ACCWGGT | 1 cut(s) | 1345 |
| Csp6I | GTAC | 3 cut(s) | 367, 616, 2259 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 919, 954 |
| CviQI | GTAC | 3 cut(s) | 367, 616, 2259 |
| DdeI | CTNAG | 5 cut(s) | 912, 1212, 1449, 1752, 1926 |
| DraIII | CACNNNGTG | 1 cut(s) | 2219 |
| EaeI | YGGCCR | 3 cut(s) | 596, 638, 888 |
| EagI | CGGCCG | 1 cut(s) | 596 |
| Eam1104I | CTCTTC | 4 cut(s) | 537, 1324, 1648, 2486 |
| EarI | CTCTTC | 4 cut(s) | 537, 1324, 1648, 2486 |
| EciI | GGCGGA | 2 cut(s) | 1049, 1055 |
| Ecl136II | GAGCTC | 2 cut(s) | 319, 1193 |
| EclXI | CGGCCG | 1 cut(s) | 596 |
| Eco130I | CCWWGG | 2 cut(s) | 334, 1261 |
| Eco147I | AGGCCT | 1 cut(s) | 339 |
| Eco24I | GRGCYC | 5 cut(s) | 26, 321, 456, 1180, 1195 |
| Eco47I | GGWCC | 3 cut(s) | 330, 969, 1789 |
| Eco52I | CGGCCG | 1 cut(s) | 596 |
| Eco53kI | GAGCTC | 2 cut(s) | 319, 1193 |
| Eco57I | CTGAAG | 1 cut(s) | 1836 |
| Eco72I | CACGTG | 1 cut(s) | 2219 |
| Eco88I | CYCGRG | 1 cut(s) | 1179 |
| EcoICRI | GAGCTC | 2 cut(s) | 319, 1193 |
| EcoRI | GAATTC | 2 cut(s) | 360, 2510 |
| EcoRII | CCWGG | 7 cut(s) | 390, 424, 1345, 1372, 1720, 1756, 2187 |
| EcoT14I | CCWWGG | 2 cut(s) | 334, 1261 |
| EcoT38I | GRGCYC | 5 cut(s) | 26, 321, 456, 1180, 1195 |
| ErhI | CCWWGG | 2 cut(s) | 334, 1261 |
| Esp3I | CGTCTC | 1 cut(s) | 355 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2154, 2186 |
| FaqI | GGGAC | 1 cut(s) | 316 |
| FbaI | TGATCA | 2 cut(s) | 1578, 1665 |
| FokI | GGATG | 8 cut(s) | 88, 146, 1247, 1262, 1565, 1652, 2474, 2486 |
| FriOI | GRGCYC | 5 cut(s) | 26, 321, 456, 1180, 1195 |
| FspBI | CTAG | 7 cut(s) | 1700, 1842, 1874, 2103, 2289, 2522, 2559 |
| GlaI | GCGC | 1 cut(s) | 936 |
| GsaI | CCCAGC | 1 cut(s) | 376 |
| GsuI | CTGGAG | 3 cut(s) | 305, 902, 1395 |
| HapII | CCGG | 4 cut(s) | 237, 599, 641, 1273 |
| HgaI | GACGC | 4 cut(s) | 556, 733, 848, 1411 |
| HhaI | GCGC | 1 cut(s) | 937 |
| Hin1I | GRCGYC | 1 cut(s) | 1422 |
| Hin6I | GCGC | 1 cut(s) | 935 |
| HinP1I | GCGC | 1 cut(s) | 935 |
| HincII | GTYRAC | 2 cut(s) | 1426, 2407 |
| HindII | GTYRAC | 2 cut(s) | 1426, 2407 |
| HindIII | AAGCTT | 2 cut(s) | 185, 300 |
| HinfI | GANTC | 5 cut(s) | 557, 851, 917, 2370, 2434 |
| HpaII | CCGG | 4 cut(s) | 237, 599, 641, 1273 |
| HphI | GGTGA | 7 cut(s) | 603, 1106, 1139, 1325, 1424, 1670, 2255 |
| Hpy166II | GTNNAC | 6 cut(s) | 282, 369, 1426, 1825, 2059, 2407 |
| Hpy188I | TCNGA | 5 cut(s) | 298, 1249, 1493, 1718, 2329 |
| Hpy8I | GTNNAC | 6 cut(s) | 282, 369, 1426, 1825, 2059, 2407 |
| Hpy99I | CGWCG | 2 cut(s) | 350, 1191 |
| HpyCH4III | ACNGT | 6 cut(s) | 205, 496, 615, 973, 1728, 2203 |
| HpyCH4IV | ACGT | 6 cut(s) | 868, 1603, 1821, 2218, 2306, 2422 |
| HpyF3I | CTNAG | 5 cut(s) | 912, 1212, 1449, 1752, 1926 |
| HpySE526I | ACGT | 6 cut(s) | 868, 1603, 1821, 2218, 2306, 2422 |
| Hsp92I | GRCGYC | 1 cut(s) | 1422 |
| HspAI | GCGC | 1 cut(s) | 935 |
| KroI | GCCGGC | 1 cut(s) | 640 |
| KroNI | GCCGGC | 1 cut(s) | 642 |
| Ksp22I | TGATCA | 2 cut(s) | 1578, 1665 |
| LmnI | GCTCC | 8 cut(s) | 103, 324, 739, 1528, 1567, 1629, 2104, 2637 |
| Lsp1109I | GCAGC | 4 cut(s) | 1194, 1942, 2234, 2566 |
| LweI | GCATC | 5 cut(s) | 1490, 1543, 1597, 1899, 2452 |
| MabI | ACCWGGT | 1 cut(s) | 1345 |
| MaeI | CTAG | 7 cut(s) | 1700, 1842, 1874, 2103, 2289, 2522, 2559 |
| MaeII | ACGT | 6 cut(s) | 868, 1603, 1821, 2218, 2306, 2422 |
| MaeIII | GTNAC | 4 cut(s) | 193, 609, 2089, 2529 |
| MbiI | CCGCTC | 1 cut(s) | 218 |
| MfeI | CAATTG | 1 cut(s) | 2094 |
| MflI | RGATCY | 3 cut(s) | 1269, 1702, 2143 |
| MhlI | GDGCHC | 7 cut(s) | 26, 273, 321, 456, 1180, 1195, 1498 |
| MlsI | TGGCCA | 1 cut(s) | 890 |
| MluNI | TGGCCA | 1 cut(s) | 890 |
| MlyI | GAGTC | 4 cut(s) | 566, 860, 911, 2364 |
| MmeI | TCCRAC | 2 cut(s) | 1530, 1540 |
| Mox20I | TGGCCA | 1 cut(s) | 890 |
| MroNI | GCCGGC | 1 cut(s) | 640 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2594 |
| MscI | TGGCCA | 1 cut(s) | 890 |
| MseI | TTAA | 9 cut(s) | 591, 720, 1239, 1338, 1617, 2028, 2073, 2255, 2498 |
| Msp20I | TGGCCA | 1 cut(s) | 890 |
| MspA1I | CMGCKG | 1 cut(s) | 2225 |
| MspI | CCGG | 4 cut(s) | 237, 599, 641, 1273 |
| MspR9I | CCNGG | 7 cut(s) | 392, 426, 1347, 1374, 1722, 1758, 2189 |
| MunI | CAATTG | 1 cut(s) | 2094 |
| Mva1269I | GAATGC | 2 cut(s) | 1983, 2172 |
| MvaI | CCWGG | 7 cut(s) | 392, 426, 1347, 1374, 1722, 1758, 2189 |
| NaeI | GCCGGC | 1 cut(s) | 642 |
| NgoMIV | GCCGGC | 1 cut(s) | 640 |
| NheI | GCTAGC | 1 cut(s) | 1873 |
| NlaIV | GGNNCC | 5 cut(s) | 332, 606, 2145, 2214, 2625 |
| NmeAIII | GCCGAG | 1 cut(s) | 2155 |
| NmuCI | GTSAC | 2 cut(s) | 609, 2089 |
| NspI | RCATGY | 2 cut(s) | 413, 2413 |
| PagI | TCATGA | 1 cut(s) | 1164 |
| PceI | AGGCCT | 1 cut(s) | 339 |
| PciI | ACATGT | 2 cut(s) | 409, 2409 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1186, 1732 |
| PctI | GAATGC | 2 cut(s) | 1983, 2172 |
| PdiI | GCCGGC | 1 cut(s) | 642 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2594 |
| PfeI | GAWTC | 1 cut(s) | 2434 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 897 |
| PfoI | TCCNGGA | 2 cut(s) | 1372, 2187 |
| PleI | GAGTC | 4 cut(s) | 565, 859, 911, 2364 |
| PmaCI | CACGTG | 1 cut(s) | 2219 |
| PmlI | CACGTG | 1 cut(s) | 2219 |
| PpsI | GAGTC | 4 cut(s) | 565, 859, 911, 2364 |
| Ppu21I | YACGTR | 2 cut(s) | 869, 2219 |
| PscI | ACATGT | 2 cut(s) | 409, 2409 |
| PshBI | ATTAAT | 1 cut(s) | 2028 |
| Psp124BI | GAGCTC | 2 cut(s) | 321, 1195 |
| Psp6I | CCWGG | 7 cut(s) | 390, 424, 1345, 1372, 1720, 1756, 2187 |
| PspCI | CACGTG | 1 cut(s) | 2219 |
| PspFI | CCCAGC | 1 cut(s) | 372 |
| PspGI | CCWGG | 7 cut(s) | 390, 424, 1345, 1372, 1720, 1756, 2187 |
| PspN4I | GGNNCC | 5 cut(s) | 332, 606, 2145, 2214, 2625 |
| PspPI | GGNCC | 6 cut(s) | 330, 790, 900, 969, 1367, 1789 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 450, 482 |
| PsuI | RGATCY | 3 cut(s) | 1269, 1702, 2143 |
| PvuII | CAGCTG | 1 cut(s) | 2225 |
| RsaI | GTAC | 3 cut(s) | 368, 617, 2260 |
| RsaNI | GTAC | 3 cut(s) | 367, 616, 2259 |
| SacI | GAGCTC | 2 cut(s) | 321, 1195 |
| SaqAI | TTAA | 9 cut(s) | 591, 720, 1239, 1338, 1617, 2028, 2073, 2255, 2498 |
| Sau96I | GGNCC | 6 cut(s) | 330, 790, 900, 969, 1367, 1789 |
| ScaI | AGTACT | 1 cut(s) | 2260 |
| SchI | GAGTC | 4 cut(s) | 566, 860, 911, 2364 |
| ScrFI | CCNGG | 7 cut(s) | 392, 426, 1347, 1374, 1722, 1758, 2189 |
| SduI | GDGCHC | 7 cut(s) | 26, 273, 321, 456, 1180, 1195, 1498 |
| SexAI | ACCWGGT | 1 cut(s) | 1345 |
| SfaNI | GCATC | 5 cut(s) | 1490, 1543, 1597, 1899, 2452 |
| SfcI | CTRYAG | 2 cut(s) | 1404, 2515 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 788 |
| SinI | GGWCC | 3 cut(s) | 330, 969, 1789 |
| SmlI | CTYRAG | 4 cut(s) | 182, 743, 1277, 1283 |
| SmoI | CTYRAG | 4 cut(s) | 182, 743, 1277, 1283 |
| SseBI | AGGCCT | 1 cut(s) | 339 |
| SspI | AATATT | 1 cut(s) | 2080 |
| SspMI | CTAG | 7 cut(s) | 1700, 1842, 1874, 2103, 2289, 2522, 2559 |
| SstI | GAGCTC | 2 cut(s) | 321, 1195 |
| StuI | AGGCCT | 1 cut(s) | 339 |
| StyD4I | CCNGG | 7 cut(s) | 390, 424, 1345, 1372, 1720, 1756, 2187 |
| StyI | CCWWGG | 2 cut(s) | 334, 1261 |
| TaaI | ACNGT | 6 cut(s) | 205, 496, 615, 973, 1728, 2203 |
| TaiI | ACGT | 6 cut(s) | 871, 1606, 1824, 2221, 2309, 2425 |
| TaqI | TCGA | 8 cut(s) | 174, 358, 471, 555, 774, 1735, 2368, 2449 |
| TatI | WGTACW | 1 cut(s) | 2258 |
| TauI | GCSGC | 6 cut(s) | 248, 586, 589, 1898, 2039, 2300 |
| TfiI | GAWTC | 1 cut(s) | 2434 |
| Tru1I | TTAA | 9 cut(s) | 591, 720, 1239, 1338, 1617, 2028, 2073, 2255, 2498 |
| Tru9I | TTAA | 9 cut(s) | 591, 720, 1239, 1338, 1617, 2028, 2073, 2255, 2498 |
| TscAI | CASTG | 3 cut(s) | 208, 937, 2206 |
| TseFI | GTSAC | 2 cut(s) | 609, 2089 |
| TseI | GCWGC | 4 cut(s) | 1207, 1955, 2222, 2579 |
| Tsp45I | GTSAC | 2 cut(s) | 609, 2089 |
| TspGWI | ACGGA | 5 cut(s) | 146, 354, 597, 2402, 2602 |
| TspRI | CASTG | 3 cut(s) | 208, 937, 2206 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 897 |
| VpaK11BI | GGWCC | 3 cut(s) | 330, 969, 1789 |
| VspI | ATTAAT | 1 cut(s) | 2028 |
| XapI | RAATTY | 3 cut(s) | 360, 1779, 2510 |
| XbaI | TCTAGA | 1 cut(s) | 1699 |
| XceI | RCATGY | 2 cut(s) | 413, 2413 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2594 |
| XspI | CTAG | 7 cut(s) | 1700, 1842, 1874, 2103, 2289, 2522, 2559 |
| ZrmI | AGTACT | 1 cut(s) | 2260 |