Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010069

Physical Location & Seq

Genomic Coordinates Forward (+)

28540671 .. 28546800

Gene Structure 6130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTGAAGACGTGGACTATATGGCTATTGCAAGTATGAGTGATGGAATGGTTGGTGCAGAGCTAGCTAATATAGTCGAGGTTGCTGCAATCAACATGATGCGTGATGGAAGAACTGAGATTACTACTGATGACTTATTGCAAGCTGCACAAATGGAAGAAAGAGGAATGCTAGATAGGAAGGACAGAAGTTTTGATACATGGAAGCAAGTAGCTATCAATGAAGCAGCGATGGCTGTTGTTGCTGCAAACTTTCCTGATCTGAAAAACATTGAGTTTGTGACAATTGCTCCTAGAGCTGGTAGGGAATTGGGTTATGTTAGAATGAAGATGGATCCTATCAACTTCAAAGAGGGAACACTTACTCGACAATCCCTACTGGATCATATTACTGTTCAACTAGCACCACGTGCGGCTGATGAACTTTGGTTTGGTGAGGGTCAGTTAAGTACAATTTGGGCGGAAACAGCAGACAATGCTAGGTCAGCTGCACGGACATATGTTCTTGGTGGCCTTTCTGAGAAGAATTATGGTCTATCTAATTTCTGGGTGGCAGATCGACTCAATATACTGGAGCAGAATCGAAAGCTCATGGATGCTGTGGTCGATGAACTTGTTAAGAAGAAGAGTCTGACCAAACAAGATTTCTTTAACCTCGTTGAGTTACATGGTTCCCTCAAACCTGCACCACCTAGTTTACTTGACATCCGGGCTGCCAAAAGAAAGCAGTTCCAGGACATCATGATGAAGCAAAAGGAATTAGTTTCAGGTAGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

259

Amino Acids

28.97

Weight (kDa)

5.17

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_3	PF17862	4 - 47	7.5e-11	AAA+ lid domain
Peptidase_M41	PF01434	69 - 165	3.1e-07	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16290
fragaria_vesca	FvH4_6g32150 FvH4_6g32150 FvH4_6g32150
malus_domestica	MD09G1206000.v1.1
prunus_persica	Prupe.3G061400_v2.0.a1 Prupe.3G065400_v2.0.a1
pyrus_communis	pycom09g12280
rosa_chinensis	RchiOBHm_Chr2g0140041
rosa_laevigata	RLG00000019844
rosa_multiflora	Rmu_co8464017.1_g000001 Rmu_co8471751.1_g000001 Rmu_sc0010982.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105120
rosa_rugosa	Rorug02G0360600 Rorug02G0360700
rosa_samantha	Rh2AG411300 Rh2BG421500 Rh2CG397400 Rh2DG431000
rosa_wichuraiana	Rw2G033690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	691
AciI	CCGC	2 cut(s)	413, 461
AclWI	GGATC	3 cut(s)	329, 342, 390
AcuI	CTGAAG	1 cut(s)	27
AcvI	CACGTG	1 cut(s)	410
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	1 cut(s)	451
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	349, 398
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	732
AjuI	GAANNNNNNNTTGG	4 cut(s)	414, 446, 629, 661
AluBI	AGCT	7 cut(s)	64, 68, 146, 215, 299, 488, 589
AluI	AGCT	7 cut(s)	64, 68, 146, 215, 299, 488, 589
AlwI	GGATC	3 cut(s)	329, 342, 390
AoxI	GGCC	1 cut(s)	511
ApeKI	GCWGC	6 cut(s)	86, 146, 227, 245, 488, 713
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AsuC2I	CCSGG	1 cut(s)	710
AsuHPI	GGTGA	1 cut(s)	446
AsuNHI	GCTAGC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	334
BarI	GAAGNNNNNNTAC	2 cut(s)	181, 213
BbrPI	CACGTG	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	15
BbvI	GCAGC	6 cut(s)	73, 133, 232, 239, 475, 700
BccI	CCATC	4 cut(s)	38, 101, 226, 325
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	1 cut(s)	734
BcnI	CCSGG	1 cut(s)	710
BfaI	CTAG	6 cut(s)	65, 173, 294, 401, 480, 693
BfuAI	ACCTGC	1 cut(s)	691
BisI	GCNGC	7 cut(s)	87, 147, 228, 246, 414, 489, 714
BlsI	GCNGC	7 cut(s)	88, 148, 229, 247, 415, 490, 715
Bme1390I	CCNGG	2 cut(s)	710, 734
BmgBI	CACGTC	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	336, 673
BmrFI	CCNGG	2 cut(s)	710, 734
BmsI	GCATC	2 cut(s)	90, 586
BmtI	GCTAGC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	710
BsaAI	YACGTR	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	384, 576
BseBI	CCWGG	1 cut(s)	734
BseGI	GGATG	2 cut(s)	601, 705
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMII	CTCAG	2 cut(s)	108, 510
BseNI	ACTGG	2 cut(s)	384, 576
BseXI	GCAGC	6 cut(s)	73, 133, 232, 239, 475, 700
BsgI	GTGCAG	4 cut(s)	78, 132, 474, 669
BshFI	GGCC	1 cut(s)	513
BsiSI	CCGG	1 cut(s)	709
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	513
Bsp143I	GATC	4 cut(s)	259, 334, 382, 556
BspACI	CCGC	2 cut(s)	413, 461
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	2 cut(s)	109, 511
BspHI	TCATGA	1 cut(s)	741
BspLI	GGNNCC	2 cut(s)	336, 673
BspMI	ACCTGC	1 cut(s)	691
BspOI	GCTAGC	1 cut(s)	68
BspPI	GGATC	3 cut(s)	329, 342, 390
BsrI	ACTGG	2 cut(s)	384, 576
BssMI	GATC	4 cut(s)	259, 334, 382, 556
Bst2UI	CCWGG	1 cut(s)	734
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	620
BstAPI	GCANNNNNTGC	2 cut(s)	410, 476
BstBAI	YACGTR	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	66, 144
BstDEI	CTNAG	2 cut(s)	117, 519
BstF5I	GGATG	2 cut(s)	601, 705
BstKTI	GATC	4 cut(s)	262, 337, 385, 559
BstMBI	GATC	4 cut(s)	259, 334, 382, 556
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 233, 242, 296, 410, 467, 476, 485
BstNI	CCWGG	1 cut(s)	734
BstSCI	CCNGG	2 cut(s)	708, 732
BstV1I	GCAGC	6 cut(s)	73, 133, 232, 239, 475, 700
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	513
BtgZI	GCGATG	1 cut(s)	245
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	601, 705
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	2 cut(s)	66, 144
CciI	TCATGA	1 cut(s)	741
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	5 cut(s)	97, 201, 592, 668, 742
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	2 cut(s)	117, 519
DpnI	GATC	4 cut(s)	261, 336, 384, 558
DpnII	GATC	4 cut(s)	259, 334, 382, 556
DraIII	CACNNNGTG	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	620
EarI	CTCTTC	1 cut(s)	620
EciI	GGCGGA	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	27
Eco72I	CACGTG	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	732
FaeI	CATG	5 cut(s)	100, 204, 595, 671, 745
FatI	CATG	5 cut(s)	96, 200, 591, 667, 741
FauNDI	CATATG	1 cut(s)	499
Fnu4HI	GCNGC	7 cut(s)	87, 147, 228, 246, 414, 489, 714
FokI	GGATG	2 cut(s)	608, 692
Fsp4HI	GCNGC	7 cut(s)	87, 147, 228, 246, 414, 489, 714
FspBI	CTAG	6 cut(s)	65, 173, 294, 401, 480, 693
GluI	GCNGC	7 cut(s)	87, 147, 228, 246, 414, 489, 714
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	1 cut(s)	513
HapII	CCGG	1 cut(s)	709
Hin1II	CATG	5 cut(s)	100, 204, 595, 671, 745
HinfI	GANTC	3 cut(s)	561, 580, 628
HpaII	CCGG	1 cut(s)	709
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	16, 698
Hpy188I	TCNGA	3 cut(s)	264, 520, 633
Hpy188III	TCNNGA	2 cut(s)	257, 742
Hpy8I	GTNNAC	2 cut(s)	16, 698
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	2 cut(s)	12, 409
HpyCH4V	TGCA	8 cut(s)	32, 59, 89, 142, 149, 248, 491, 686
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 233, 242, 296, 410, 467, 476, 485
HpyF3I	CTNAG	2 cut(s)	117, 519
HpySE526I	ACGT	2 cut(s)	12, 409
Hsp92II	CATG	5 cut(s)	100, 204, 595, 671, 745
Kzo9I	GATC	4 cut(s)	259, 334, 382, 556
LmnI	GCTCC	2 cut(s)	295, 574
Lsp1109I	GCAGC	6 cut(s)	73, 133, 232, 239, 475, 700
LweI	GCATC	2 cut(s)	90, 586
MaeI	CTAG	6 cut(s)	65, 173, 294, 401, 480, 693
MaeII	ACGT	2 cut(s)	12, 409
MaeIII	GTNAC	3 cut(s)	280, 663, 773
MalI	GATC	4 cut(s)	261, 336, 384, 558
MboI	GATC	4 cut(s)	259, 334, 382, 556
MboII	GAAGA	7 cut(s)	20, 123, 170, 340, 535, 634, 637
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	6 cut(s)	285, 308, 453, 526, 541, 758
MlyI	GAGTC	2 cut(s)	555, 637
MnlI	CCTC	6 cut(s)	73, 158, 346, 430, 665, 686
MseI	TTAA	3 cut(s)	446, 618, 651
MslI	CAYNNNNRTG	1 cut(s)	743
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	709
MspR9I	CCNGG	2 cut(s)	710, 734
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	734
MwoI	GCNNNNNNNGC	8 cut(s)	65, 233, 242, 296, 410, 467, 476, 485
NciI	CCSGG	1 cut(s)	710
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	4 cut(s)	259, 334, 382, 556
NheI	GCTAGC	1 cut(s)	64
NlaIII	CATG	5 cut(s)	100, 204, 595, 671, 745
NlaIV	GGNNCC	2 cut(s)	336, 673
NmuCI	GTSAC	1 cut(s)	280
PagI	TCATGA	1 cut(s)	741
PctI	GAATGC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	580
PfoI	TCCNGGA	1 cut(s)	732
PkrI	GCNGC	7 cut(s)	88, 148, 229, 247, 415, 490, 715
PleI	GAGTC	2 cut(s)	555, 636
PmaCI	CACGTG	1 cut(s)	410
PmlI	CACGTG	1 cut(s)	410
PpsI	GAGTC	2 cut(s)	555, 636
Ppu21I	YACGTR	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	732
PspCI	CACGTG	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	732
PspN4I	GGNNCC	2 cut(s)	336, 673
PsrI	GAACNNNNNNTAC	2 cut(s)	106, 138
PsuI	RGATCY	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
RseI	CAYNNNNRTG	1 cut(s)	743
SaqAI	TTAA	3 cut(s)	446, 618, 651
SatI	GCNGC	7 cut(s)	87, 147, 228, 246, 414, 489, 714
Sau3AI	GATC	4 cut(s)	259, 334, 382, 556
SchI	GAGTC	2 cut(s)	555, 637
ScrFI	CCNGG	2 cut(s)	710, 734
SfaNI	GCATC	2 cut(s)	90, 586
SmiMI	CAYNNNNRTG	1 cut(s)	743
Sse9I	AATT	6 cut(s)	285, 308, 453, 526, 541, 758
SsiI	CCGC	2 cut(s)	413, 461
SspMI	CTAG	6 cut(s)	65, 173, 294, 401, 480, 693
StyD4I	CCNGG	2 cut(s)	708, 732
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	2 cut(s)	15, 412
TaqI	TCGA	5 cut(s)	78, 367, 559, 583, 606
TasI	AATT	6 cut(s)	285, 308, 453, 526, 541, 758
TatI	WGTACW	1 cut(s)	449
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	3 cut(s)	446, 618, 651
Tru9I	TTAA	3 cut(s)	446, 618, 651
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	6 cut(s)	86, 146, 227, 245, 488, 713
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	5 cut(s)	237, 341, 435, 624, 761
TspGWI	ACGGA	1 cut(s)	508
XspI	CTAG	6 cut(s)	65, 173, 294, 401, 480, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.