Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8471751.1

Orthogroup ID

OG0010069

Physical Location & Seq

Genomic Coordinates Reverse (-)

67 .. 2030

Gene Structure 1964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8471751.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

atgaaggctcagaagaaggaggaggagaggagagtgaggagagagaggaggaagaagaagcacgacgagtccttgagggaggctcgccggaattacttgcagatggctaatgtgtgggccaatttggctcaggattcgaatgtggccaccgcgctggggctggtgttcttttacattttttacaggactgtggtgcttagttataggaggcagaaaaaggattatgaggacaggttgaagattgagcaggccgaggccgaggagaggaagaagatgagggatttggagaggatggaggggattgagggcggcgaggaggatgaggaaggggagcaggggaagggggagcagaatccttatatgaagatggcaatgcagttcatgaggtccggggctcgtgtgagacgagctcataataagaggatgcctcagtatttggagagaggtgtggatgtcaagttttcggatgttgctggacttgggaagatcaggcttgagcttgaggagattgtcaagttcttcactcatggggaaatgtataggagaagaggagttaaaattccaggtgggatacttctttgtggccctcctggagtggggaagactttgcttgcaaaagctgttgctggtgaggcaggcgtcaacttcttttccatttcggcctctcaattcgtagagatatatgttggggttggtgcttctcgtgtccgagcactctaccaggaagcaaaggaaaacgctccatcagttgtcttcattgatgagttggatgctgttggaagggagcgtggtttgatcaagggttctggtggacaagaacgtgatgcaactcttaaccagctcctggtttgtttggatgggtttgaaggaaggggggaagtgatcactattgcttccacaaatagaccagacattctagatccagcccttgtcagacctggaaggtttgatcggaagatatatatccctaagcctggtcttataggtcgcattgaaattttgaaggtccatgcgcgcaagaaacctatggcggaagatgtggactatatggctattgcaagtatgagtgatggaatggttggtgcagagctagctaatatagtcgaggttgctgcaatcaacatgatgcgtgatggaagaactgaggtattgtctcctcttagactaaccatagaacctatgcctcaaatgaaagaggcagaagaagagaaaaaggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

406

Amino Acids

46.0

Weight (kDa)

9.11

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16290
fragaria_vesca	FvH4_6g32150 FvH4_6g32150 FvH4_6g32150
malus_domestica	MD09G1206000.v1.1
prunus_persica	Prupe.3G061400_v2.0.a1 Prupe.3G065400_v2.0.a1
pyrus_communis	pycom09g12280
rosa_chinensis	RchiOBHm_Chr2g0140041
rosa_laevigata	RLG00000019844
rosa_multiflora	Rmu_co8464017.1_g000001 Rmu_co8471751.1_g000001 Rmu_sc0010982.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105120
rosa_rugosa	Rorug02G0360600 Rorug02G0360700
rosa_samantha	Rh2AG411300 Rh2BG421500 Rh2CG397400 Rh2DG431000
rosa_wichuraiana	Rw2G033690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	844
AccII	CGCG	2 cut(s)	152, 1015
AciI	CCGC	3 cut(s)	150, 309, 1031
AclWI	GGATC	1 cut(s)	914
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	2 cut(s)	558, 996
AcyI	GRCGYC	1 cut(s)	639
AfiI	CCNNNNNNNGG	5 cut(s)	156, 264, 596, 844, 974
AgsI	TTSAA	4 cut(s)	238, 866, 995, 1003
AjnI	CCWGG	6 cut(s)	562, 589, 720, 843, 937, 973
AluBI	AGCT	6 cut(s)	410, 499, 620, 841, 1090, 1094
AluI	AGCT	6 cut(s)	410, 499, 620, 841, 1090, 1094
Alw21I	GWGCWC	2 cut(s)	412, 715
Alw26I	GTCTC	2 cut(s)	397, 1158
AlwI	GGATC	1 cut(s)	914
AlwNI	CAGNNNCTG	1 cut(s)	844
AoxI	GGCC	6 cut(s)	117, 144, 249, 255, 583, 660
ApeKI	GCWGC	1 cut(s)	1112
ApoI	RAATTY	2 cut(s)	558, 996
AspLEI	GCGC	3 cut(s)	154, 1015, 1017
AspS9I	GGNCC	4 cut(s)	117, 387, 584, 1006
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	1 cut(s)	641
AsuII	TTCGAA	1 cut(s)	137
AsuNHI	GCTAGC	1 cut(s)	1090
AvaII	GGWCC	2 cut(s)	387, 1006
BalI	TGGCCA	1 cut(s)	146
BanII	GRGCYC	2 cut(s)	397, 412
BauI	CACGAG	2 cut(s)	396, 702
BbsI	GAAGAC	2 cut(s)	608, 745
Bbv12I	GWGCWC	2 cut(s)	412, 715
BbvI	GCAGC	1 cut(s)	1099
BccI	CCATC	7 cut(s)	97, 286, 361, 751, 851, 1064, 1127
BcgI	CGANNNNNNTGC	2 cut(s)	1094, 1128
BciT130I	CCWGG	6 cut(s)	564, 591, 722, 845, 939, 975
BciVI	GTATCC	1 cut(s)	564
BclI	TGATCA	2 cut(s)	795, 882
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	397, 1158
BfaI	CTAG	2 cut(s)	917, 1091
BfuI	GTATCC	1 cut(s)	564
BglI	GCCNNNNNGGC	1 cut(s)	125
BisI	GCNGC	2 cut(s)	310, 1113
BlsI	GCNGC	2 cut(s)	311, 1114
Bme1390I	CCNGG	7 cut(s)	391, 564, 591, 722, 845, 939, 975
Bme18I	GGWCC	2 cut(s)	387, 1006
BmgT120I	GGNCC	4 cut(s)	117, 387, 584, 1006
BmrFI	CCNGG	7 cut(s)	391, 564, 591, 722, 845, 939, 975
BmsI	GCATC	4 cut(s)	414, 760, 814, 1116
BmtI	GCTAGC	1 cut(s)	1094
BpiI	GAAGAC	2 cut(s)	608, 745
BplI	GAGNNNNNCTC	6 cut(s)	67, 99, 394, 426, 412, 444
BpmI	CTGGAG	1 cut(s)	612
Bpu10I	CCTNAGC	2 cut(s)	129, 969
Bpu14I	TTCGAA	1 cut(s)	137
BpuEI	CTTGAG	3 cut(s)	94, 515, 521
BpuMI	CCSGG	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	962
BsaHI	GRCGYC	1 cut(s)	639
BsaJI	CCNNGG	3 cut(s)	252, 258, 390
Bsc4I	CCNNNNNNNGG	5 cut(s)	156, 264, 596, 844, 974
Bse3DI	GCAATG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	962
BseBI	CCWGG	6 cut(s)	564, 591, 722, 845, 939, 975
BseDI	CCNNGG	3 cut(s)	252, 258, 390
BseGI	GGATG	7 cut(s)	297, 325, 429, 457, 472, 775, 862
BseJI	GATNNNNATC	1 cut(s)	962
BseLI	CCNNNNNNNGG	5 cut(s)	156, 264, 596, 844, 974
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	4 cut(s)	23, 143, 443, 1134
BsePI	GCGCGC	1 cut(s)	1013
BseXI	GCAGC	1 cut(s)	1099
BseYI	CCCAGC	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	1104
Bsh1236I	CGCG	2 cut(s)	152, 1015
BshFI	GGCC	6 cut(s)	119, 146, 251, 257, 585, 662
BsiHKAI	GWGCWC	2 cut(s)	412, 715
BsiSI	CCGG	2 cut(s)	88, 390
BslI	CCNNNNNNNGG	5 cut(s)	156, 264, 596, 844, 974
BsmAI	GTCTC	2 cut(s)	397, 1158
BsmBI	CGTCTC	1 cut(s)	397
BsnI	GGCC	6 cut(s)	119, 146, 251, 257, 585, 662
Bsp119I	TTCGAA	1 cut(s)	137
Bsp1286I	GDGCHC	3 cut(s)	397, 412, 715
Bsp143I	GATC	5 cut(s)	486, 795, 882, 919, 949
BspACI	CCGC	3 cut(s)	150, 309, 1031
BspANI	GGCC	6 cut(s)	119, 146, 251, 257, 585, 662
BspCNI	CTCAG	4 cut(s)	22, 142, 442, 1135
BspFNI	CGCG	2 cut(s)	152, 1015
BspHI	TCATGA	1 cut(s)	381
BspOI	GCTAGC	1 cut(s)	1094
BspPI	GGATC	1 cut(s)	914
BspT104I	TTCGAA	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	378
BssECI	CCNNGG	3 cut(s)	252, 258, 390
BssHII	GCGCGC	1 cut(s)	1013
BssMI	GATC	5 cut(s)	486, 795, 882, 919, 949
BssNI	GRCGYC	1 cut(s)	639
BssSI	CACGAG	2 cut(s)	396, 702
Bst2BI	CACGAG	2 cut(s)	396, 702
Bst2UI	CCWGG	6 cut(s)	564, 591, 722, 845, 939, 975
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	2 cut(s)	541, 1200
BstACI	GRCGYC	1 cut(s)	639
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	6 cut(s)	85, 249, 612, 637, 1015, 1092
BstDEI	CTNAG	7 cut(s)	9, 129, 197, 429, 969, 1143, 1160
BstF5I	GGATG	7 cut(s)	297, 325, 429, 457, 472, 775, 862
BstFNI	CGCG	2 cut(s)	152, 1015
BstHHI	GCGC	3 cut(s)	154, 1015, 1017
BstKTI	GATC	5 cut(s)	489, 798, 885, 922, 952
BstMAI	GTCTC	2 cut(s)	397, 1158
BstMBI	GATC	5 cut(s)	486, 795, 882, 919, 949
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 632, 1091
BstNI	CCWGG	6 cut(s)	564, 591, 722, 845, 939, 975
BstSCI	CCNGG	7 cut(s)	389, 562, 589, 720, 843, 937, 973
BstUI	CGCG	2 cut(s)	152, 1015
BstV1I	GCAGC	1 cut(s)	1099
BstV2I	GAAGAC	2 cut(s)	608, 745
BstX2I	RGATCY	1 cut(s)	919
BstXI	CCANNNNNNTGG	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	919
BsuI	GTATCC	1 cut(s)	564
BsuRI	GGCC	6 cut(s)	119, 146, 251, 257, 585, 662
BtsCI	GGATG	7 cut(s)	297, 325, 429, 457, 472, 775, 862
Cac8I	GCNNGC	6 cut(s)	85, 249, 612, 637, 1015, 1092
CaiI	CAGNNNCTG	1 cut(s)	844
CciI	TCATGA	1 cut(s)	381
CfoI	GCGC	3 cut(s)	154, 1015, 1017
Cfr13I	GGNCC	4 cut(s)	117, 387, 584, 1006
CseI	GACGC	1 cut(s)	628
CviAII	CATG	4 cut(s)	382, 527, 1010, 1123
DdeI	CTNAG	7 cut(s)	9, 129, 197, 429, 969, 1143, 1160
DpnI	GATC	5 cut(s)	488, 797, 884, 921, 951
DpnII	GATC	5 cut(s)	486, 795, 882, 919, 949
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	2 cut(s)	541, 1200
EarI	CTCTTC	2 cut(s)	541, 1200
EciI	GGCGGA	1 cut(s)	1046
Ecl136II	GAGCTC	1 cut(s)	410
Eco24I	GRGCYC	2 cut(s)	397, 412
Eco47I	GGWCC	2 cut(s)	387, 1006
Eco53kI	GAGCTC	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	410
EcoRII	CCWGG	6 cut(s)	562, 589, 720, 843, 937, 973
EcoT38I	GRGCYC	2 cut(s)	397, 412
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	4 cut(s)	385, 530, 1013, 1126
FatI	CATG	4 cut(s)	381, 526, 1009, 1122
FbaI	TGATCA	2 cut(s)	795, 882
Fnu4HI	GCNGC	2 cut(s)	310, 1113
FokI	GGATG	7 cut(s)	304, 332, 436, 464, 479, 782, 869
FriOI	GRGCYC	2 cut(s)	397, 412
Fsp4HI	GCNGC	2 cut(s)	310, 1113
FspBI	CTAG	2 cut(s)	917, 1091
GlaI	GCGC	3 cut(s)	153, 1014, 1016
GluI	GCNGC	2 cut(s)	310, 1113
GsaI	CCCAGC	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	6 cut(s)	119, 146, 251, 257, 585, 662
HapII	CCGG	2 cut(s)	88, 390
HgaI	GACGC	1 cut(s)	628
HhaI	GCGC	3 cut(s)	154, 1015, 1017
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	4 cut(s)	385, 530, 1013, 1126
Hin6I	GCGC	3 cut(s)	152, 1013, 1015
HinP1I	GCGC	3 cut(s)	152, 1013, 1015
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	68, 134, 352
HpaII	CCGG	2 cut(s)	88, 390
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	3 cut(s)	643, 812, 1042
Hpy188I	TCNGA	5 cut(s)	12, 466, 710, 935, 954
Hpy188III	TCNNGA	3 cut(s)	131, 382, 917
Hpy8I	GTNNAC	3 cut(s)	643, 812, 1042
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	8 cut(s)	10, 320, 334, 774, 860, 864, 936, 997
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	820
HpyCH4V	TGCA	7 cut(s)	100, 376, 614, 827, 1058, 1085, 1115
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 632, 1091
HpyF3I	CTNAG	7 cut(s)	9, 129, 197, 429, 969, 1143, 1160
HpySE526I	ACGT	1 cut(s)	820
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	4 cut(s)	385, 530, 1013, 1126
HspAI	GCGC	3 cut(s)	152, 1013, 1015
Ksp22I	TGATCA	2 cut(s)	795, 882
Kzo9I	GATC	5 cut(s)	486, 795, 882, 919, 949
LmnI	GCTCC	5 cut(s)	331, 346, 745, 784, 846
Lsp1109I	GCAGC	1 cut(s)	1099
LweI	GCATC	4 cut(s)	414, 760, 814, 1116
MaeI	CTAG	2 cut(s)	917, 1091
MaeII	ACGT	1 cut(s)	820
MalI	GATC	5 cut(s)	488, 797, 884, 921, 951
MboI	GATC	5 cut(s)	486, 795, 882, 919, 949
MflI	RGATCY	1 cut(s)	919
MhlI	GDGCHC	3 cut(s)	397, 412, 715
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	5 cut(s)	91, 121, 558, 668, 996
MluNI	TGGCCA	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	747, 757
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	2 cut(s)	555, 834
Msp20I	TGGCCA	1 cut(s)	146
MspI	CCGG	2 cut(s)	88, 390
MspR9I	CCNGG	7 cut(s)	391, 564, 591, 722, 845, 939, 975
MvaI	CCWGG	6 cut(s)	564, 591, 722, 845, 939, 975
MvnI	CGCG	2 cut(s)	152, 1015
MwoI	GCNNNNNNNGC	3 cut(s)	125, 632, 1091
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	5 cut(s)	486, 795, 882, 919, 949
NheI	GCTAGC	1 cut(s)	1090
NlaIII	CATG	4 cut(s)	385, 530, 1013, 1126
NmeAIII	GCCGAG	2 cut(s)	277, 283
NspV	TTCGAA	1 cut(s)	137
PagI	TCATGA	1 cut(s)	381
PauI	GCGCGC	1 cut(s)	1013
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	134, 352
PflMI	CCANNNNNTGG	1 cut(s)	844
PfoI	TCCNGGA	1 cut(s)	589
PkrI	GCNGC	2 cut(s)	311, 1114
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	412
Psp6I	CCWGG	6 cut(s)	562, 589, 720, 843, 937, 973
PspFI	CCCAGC	1 cut(s)	154
PspGI	CCWGG	6 cut(s)	562, 589, 720, 843, 937, 973
PspPI	GGNCC	4 cut(s)	117, 387, 584, 1006
PstNI	CAGNNNCTG	1 cut(s)	844
PsuI	RGATCY	1 cut(s)	919
PteI	GCGCGC	1 cut(s)	1013
SacI	GAGCTC	1 cut(s)	412
SaqAI	TTAA	2 cut(s)	555, 834
SatI	GCNGC	2 cut(s)	310, 1113
Sau3AI	GATC	5 cut(s)	486, 795, 882, 919, 949
Sau96I	GGNCC	4 cut(s)	117, 387, 584, 1006
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	7 cut(s)	391, 564, 591, 722, 845, 939, 975
SduI	GDGCHC	3 cut(s)	397, 412, 715
SfaNI	GCATC	4 cut(s)	414, 760, 814, 1116
SfuI	TTCGAA	1 cut(s)	137
SinI	GGWCC	2 cut(s)	387, 1006
SmlI	CTYRAG	3 cut(s)	73, 494, 500
SmoI	CTYRAG	3 cut(s)	73, 494, 500
Sse9I	AATT	5 cut(s)	91, 121, 558, 668, 996
SsiI	CCGC	3 cut(s)	150, 309, 1031
SspMI	CTAG	2 cut(s)	917, 1091
SstI	GAGCTC	1 cut(s)	412
StyD4I	CCNGG	7 cut(s)	389, 562, 589, 720, 843, 937, 973
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	823
TaqI	TCGA	2 cut(s)	137, 1104
TasI	AATT	5 cut(s)	91, 121, 558, 668, 996
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	134, 352
Tru1I	TTAA	2 cut(s)	555, 834
Tru9I	TTAA	2 cut(s)	555, 834
TseI	GCWGC	1 cut(s)	1112
TspDTI	ATGAA	5 cut(s)	17, 370, 377, 745, 1205
Van91I	CCANNNNNTGG	1 cut(s)	844
VpaK11BI	GGWCC	2 cut(s)	387, 1006
XapI	RAATTY	2 cut(s)	558, 996
XbaI	TCTAGA	1 cut(s)	916
XspI	CTAG	2 cut(s)	917, 1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.