Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8464017.1

Orthogroup ID

OG0010069

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1662

Gene Structure 1662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8464017.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 451 bp

ctggatcatattactgttcaactagcaccacgtgcagccgatgaactttggtttggtgagggtcagttaagtacaatatgggctgaaacagcagacaatgctaggtcagctgcacggacgtatgttcttggtggcctttctgagaagaattatggtctatctaatttctgggtggcagatcgactcaatgacctcgatgtgcaggcattgcggattgtcaacatgtgttatgaacgcgcaaaagagattctggaccagaaccgaaagctcatggatgctgtcgtcgatgaacttgttaagaagaagagtttgaccaaacaagatttctttgacctcattgagttacatggttccctcaaacctgtgccacctagtttacttgacatccgggctgccaaaagaaaggagttccaggacatgatgatgaagcaaaaggaattagtttcaggta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

150

Amino Acids

17.07

Weight (kDa)

5.74

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16290
fragaria_vesca	FvH4_6g32150 FvH4_6g32150 FvH4_6g32150
malus_domestica	MD09G1206000.v1.1
prunus_persica	Prupe.3G061400_v2.0.a1 Prupe.3G065400_v2.0.a1
pyrus_communis	pycom09g12280
rosa_chinensis	RchiOBHm_Chr2g0140041
rosa_laevigata	RLG00000019844
rosa_multiflora	Rmu_co8464017.1_g000001 Rmu_co8471751.1_g000001 Rmu_sc0010982.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105120
rosa_rugosa	Rorug02G0360600 Rorug02G0360700
rosa_samantha	Rh2AG411300 Rh2BG421500 Rh2CG397400 Rh2DG431000
rosa_wichuraiana	Rw2G033690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	237
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	12
AcvI	CACGTG	1 cut(s)	32
AdeI	CACNNNGTG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	73
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	411
AjuI	GAANNNNNNNTTGG	4 cut(s)	36, 68, 308, 340
AluBI	AGCT	2 cut(s)	110, 268
AluI	AGCT	2 cut(s)	110, 268
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	3 cut(s)	35, 110, 392
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	253
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	253
BbrPI	CACGTG	1 cut(s)	32
BbvI	GCAGC	3 cut(s)	47, 97, 379
BciT130I	CCWGG	1 cut(s)	413
BcnI	CCSGG	1 cut(s)	389
BfaI	CTAG	3 cut(s)	23, 102, 372
BisI	GCNGC	3 cut(s)	36, 111, 393
BlsI	GCNGC	3 cut(s)	37, 112, 394
Bme1390I	CCNGG	2 cut(s)	389, 413
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	2 cut(s)	389, 413
BmsI	GCATC	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	389
BsaAI	YACGTR	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	413
BseGI	GGATG	2 cut(s)	280, 384
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	47, 97, 379
BsgI	GTGCAG	3 cut(s)	54, 96, 221
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	388
BsnI	GGCC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	4, 178
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	206
BssMI	GATC	2 cut(s)	4, 178
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	299
BstAPI	GCANNNNNTGC	3 cut(s)	32, 98, 208
BstBAI	YACGTR	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	280, 384
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	2 cut(s)	7, 181
BstMBI	GATC	2 cut(s)	4, 178
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 89, 98, 107, 208
BstNI	CCWGG	1 cut(s)	413
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	387, 411
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	47, 97, 379
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	280, 384
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	4 cut(s)	223, 271, 347, 418
CviJI	RGCY	6 cut(s)	38, 83, 110, 135, 268, 392
CviKI_1	RGCY	6 cut(s)	38, 83, 110, 135, 268, 392
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	2 cut(s)	6, 180
DpnII	GATC	2 cut(s)	4, 178
DraIII	CACNNNGTG	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	253
Eco72I	CACGTG	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	411
FaeI	CATG	4 cut(s)	226, 274, 350, 421
FaiI	YATR	9 cut(s)	9, 79, 123, 153, 224, 231, 272, 348, 419
FatI	CATG	4 cut(s)	222, 270, 346, 417
Fnu4HI	GCNGC	3 cut(s)	36, 111, 393
FokI	GGATG	2 cut(s)	287, 371
Fsp4HI	GCNGC	3 cut(s)	36, 111, 393
FspBI	CTAG	3 cut(s)	23, 102, 372
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	3 cut(s)	36, 111, 393
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	388
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	226, 274, 350, 421
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	183, 247
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	220, 377
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	2 cut(s)	220, 377
Hpy99I	CGWCG	1 cut(s)	287
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	2 cut(s)	31, 119
HpyCH4V	TGCA	3 cut(s)	35, 113, 202
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 89, 98, 107, 208
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	2 cut(s)	31, 119
Hsp92II	CATG	4 cut(s)	226, 274, 350, 421
HspAI	GCGC	1 cut(s)	237
Kzo9I	GATC	2 cut(s)	4, 178
LpnPI	CCDG	9 cut(s)	154, 188, 236, 269, 375, 398, 401, 425, 432
Lsp1109I	GCAGC	3 cut(s)	47, 97, 379
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	3 cut(s)	23, 102, 372
MaeII	ACGT	2 cut(s)	31, 119
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	2 cut(s)	6, 180
MboI	GATC	2 cut(s)	4, 178
MboII	GAAGA	3 cut(s)	157, 313, 316
MluCI	AATT	3 cut(s)	148, 163, 437
MlyI	GAGTC	1 cut(s)	177
MnlI	CCTC	4 cut(s)	52, 203, 344, 365
MseI	TTAA	2 cut(s)	68, 297
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	1 cut(s)	388
MspR9I	CCNGG	2 cut(s)	389, 413
MvaI	CCWGG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	5 cut(s)	32, 89, 98, 107, 208
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	2 cut(s)	4, 178
NlaIII	CATG	4 cut(s)	226, 274, 350, 421
NlaIV	GGNNCC	1 cut(s)	352
NspI	RCATGY	1 cut(s)	226
PciI	ACATGT	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	247
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	3 cut(s)	37, 112, 394
PleI	GAGTC	1 cut(s)	177
PmaCI	CACGTG	1 cut(s)	32
PmlI	CACGTG	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	177
Ppu21I	YACGTR	1 cut(s)	32
PscI	ACATGT	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	411
PspCI	CACGTG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	68, 297
SatI	GCNGC	3 cut(s)	36, 111, 393
Sau3AI	GATC	2 cut(s)	4, 178
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	389, 413
SfaNI	GCATC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	422
Sse9I	AATT	3 cut(s)	148, 163, 437
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	3 cut(s)	23, 102, 372
StyD4I	CCNGG	2 cut(s)	387, 411
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	2 cut(s)	34, 122
TaqI	TCGA	3 cut(s)	181, 195, 285
TasI	AATT	3 cut(s)	148, 163, 437
TatI	WGTACW	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	2 cut(s)	68, 297
Tru9I	TTAA	2 cut(s)	68, 297
TseI	GCWGC	3 cut(s)	35, 110, 392
TspDTI	ATGAA	4 cut(s)	57, 246, 303, 440
TspGWI	ACGGA	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	253
XceI	RCATGY	1 cut(s)	226
XspI	CTAG	3 cut(s)	23, 102, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.