Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010069

Physical Location & Seq

Genomic Coordinates Reverse (-)

59248454 .. 59254950

Gene Structure 6497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG421500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2190 bp

ATGGCCTGCCAATGCCTTCTGGGCTCTTATTCATCTTCCTCCCTACCCCCAAACCCCAGCCCCAAAACCCCTAAAACCCCACCCAAATCCAGAATCCCCTCCTCCATTTCCTCCCACCTTTCTCCCACTTCCGATAACGAAGAAAACGATAAAACCAAGAGCCCCAATTTCGATTTCCTCAAGCTCTCTGTAACTCTAACCGTCATCTCCGCCTCTCTCCCCCAGACCCCAACCTCACGCGCCGCCGTCAAGGAGAAAAAGCCACGCGCCCCCAAGAAATCCTCCGCTTCTAGAAAGTCCGAAGCTTTATCTCCTCAAGAGCTCAAATCCTGGTCCCAAGGTCTCCCCGTCGTCTCGAACCGTATCCCCTACACCCAGCTCCTCGAATTGAACGGGGAATCGAAGCTCAAGCATGTAATCAAGCCTCCGGCGATCGAATTGCGGCAGAAGGCCGAGCCGGTCCTGGTGGTTCTTGAAGATTCCAGAGTGCTGCGCACCGTTTTGCCGTCGCCGGAGACTGACAAGAGGTTCTGGGAGGAATGGGAGAAGTTGAATTTGGACTCTTTGTGCGTCAACGCCTACACGCCGCCGCTGAGGCCGCCGGAGGTTCCTATGCCGTACCTGAGCTTCCTGGCGAGAATGCCGGCGGTGGTGGCGTGGTTTTCGAGGACGAGGAAGCCGGCGAGGAAGGAGAGCAAGAGGGCGGCGGAGCTGAGGCAGGCGAGGGAGCAGTTCAAGATGCAGAGGAAGGAGGAGCTGGAGAGAATGAGGAACGAGAGAGAGATGATTGATAGGGCCATGAAGGCTCAGAAGAAGGAGGAGGAGAGGAGAGTGAGGAGAGAGAGGAGGAAGAAGAAGCACGACGAGTCCTTGAGGGAGGCTCGCCGGAATTACTTGCAGATGGCTAATGTGTGGGCCAATTTGGCTCAGGATTCGAATGTGGCCACCGCGCTGGGGCTGGTGTTCTTTTACATTTTTTACAGGACTGTGGTGCTTAGTTATAGGAGGCAGAAAAAGGATTATGAGGACAGGTTGAAGATTGAGCAGGCCGAGGCCGAGGAGAGGAAGAAGATGAGGGATTTGGAGAGGATGGAGGGGATTGAGGGCGGCGAGGAGGATGAGGAAGGGGAGCAGGGGAAGGGGGAGCAGAATCCTTATATGAAGATGGCAATGCAGTTCATGAGGTCCGGGGCTCGTGTGAGACGAGCTCATAATAAGAGGATGCCTCAGTATTTGGAGAGAGGTGTGGATGTCAAGTTTTCGGATGTTGCTGGACTTGGGAAGATCAGGCTTGAGCTTGAGGAGATTGTCAAGTTCTTCACTCATGGGGAAATGTATAGGAGAAGAGGAGTTAAAATTCCAGGTGGGATACTTCTTTGTGGCCCTCCTGGAGTGGGGAAGACTTTGCTTGCAAAAGCTGTTGCTGGTGAGGCAGGCGTCAACTTCTTTTCCATTTCGGCCTCTCAATTCGTAGAGATATATGTTGGAGTTGGTGCTTCTCGTGTCCGAGCACTCTACCAGGAAGCAAAGGAAAACGCTCCATCAGTTGTCTTCATTGATGAGTTGGATGCTGTTGGAAGGGAGCGTGGTTTGATCAAGGGTTCTGGTGGACAAGAACGTGATGCAACTCTTAACCAGCTCCTGGTTTGTTTGGATGGGTTTGAAGGAAGGGGGGAAGTGATCACTATTGCTTCCACAAATAGACCAGACATTCTAGATCCAGCCCTTGTCAGACCTGGAAGGTTTGATCGGAAGATATATATCCCTAAGCCTGGTCTTATAGGTCGCATTGAAATTTTGAAGGTCCATGCGCGCAAGAAACCTATGGCGGAAGATGTGGACTATATGGCTATTGCAAGTATGAGTGATGGAATGGTTGGTGCAGAGCTAGCTAATATAGTTGAGGTTGCTGCAATCAACATGATGCGTGATGGAAGAACTGAGATTACTACTGATGACCTATTACAAGCTGCACAAATGGAAGAAAGAGGAATGCTAGATAGAAAGGACAGAAGTTTTGATACATGGAAGCAAGTAGCTATCAATGAAGCAGCGATGGCTGTTGTTGCTGCAAACTTTCCTGATCTGAAAAACATTGAATTTGTATGGTCCCCTAGCTCAAGCCTTTCTTCCTCTATTTTTTGGTCTGAAAACTTTATGCTTCTTCTGTTTTACATTTTCATAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

729

Amino Acids

82.57

Weight (kDa)

9.43

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	457 - 589	4.4e-43	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	612 - 655	3.1e-10	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16290
fragaria_vesca	FvH4_6g32150 FvH4_6g32150 FvH4_6g32150
malus_domestica	MD09G1206000.v1.1
prunus_persica	Prupe.3G061400_v2.0.a1 Prupe.3G065400_v2.0.a1
pyrus_communis	pycom09g12280
rosa_chinensis	RchiOBHm_Chr2g0140041
rosa_laevigata	RLG00000019844
rosa_multiflora	Rmu_co8464017.1_g000001 Rmu_co8471751.1_g000001 Rmu_sc0010982.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105120
rosa_rugosa	Rorug02G0360600 Rorug02G0360700
rosa_samantha	Rh2AG411300 Rh2BG421500 Rh2CG397400 Rh2DG431000
rosa_wichuraiana	Rw2G033690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	494
AccB7I	CCANNNNNTGG	1 cut(s)	1642
AccII	CGCG	4 cut(s)	240, 267, 950, 1813
AclWI	GGATC	1 cut(s)	1712
AcoI	YGGCCR	1 cut(s)	942
AcsI	RAATTY	4 cut(s)	553, 1356, 1794, 2099
AcyI	GRCGYC	1 cut(s)	1437
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	5 cut(s)	954, 1062, 1394, 1642, 1772
AgsI	TTSAA	9 cut(s)	391, 476, 553, 736, 1036, 1664, 1793, 1801, 2099
AjnI	CCWGG	9 cut(s)	329, 462, 630, 1360, 1387, 1518, 1641, 1735, 1771
AjuI	GAANNNNNNNTTGG	4 cut(s)	158, 190, 539, 571
Alw21I	GWGCWC	3 cut(s)	324, 1210, 1513
Alw26I	GTCTC	4 cut(s)	347, 358, 509, 1195
AlwI	GGATC	1 cut(s)	1712
AlwNI	CAGNNNCTG	1 cut(s)	1642
ApeKI	GCWGC	5 cut(s)	490, 1910, 1970, 2051, 2069
ApoI	RAATTY	4 cut(s)	553, 1356, 1794, 2099
ArsI	GACNNNNNNTTYG	2 cut(s)	2000, 2032
AspLEI	GCGC	6 cut(s)	242, 269, 495, 952, 1813, 1815
AspS9I	GGNCC	8 cut(s)	333, 460, 795, 915, 1185, 1382, 1804, 2109
AsuC2I	CCSGG	1 cut(s)	1189
AsuHPI	GGTGA	1 cut(s)	1439
AsuII	TTCGAA	1 cut(s)	935
AsuNHI	GCTAGC	1 cut(s)	1888
AvaII	GGWCC	5 cut(s)	333, 460, 1185, 1804, 2109
BalI	TGGCCA	1 cut(s)	944
BanII	GRGCYC	5 cut(s)	26, 164, 324, 1195, 1210
BarI	GAAGNNNNNNTAC	4 cut(s)	611, 643, 2005, 2037
BauI	CACGAG	2 cut(s)	1194, 1500
BbsI	GAAGAC	2 cut(s)	1406, 1543
Bbv12I	GWGCWC	3 cut(s)	324, 1210, 1513
BbvCI	CCTCAGC	2 cut(s)	593, 713
BbvI	GCAGC	5 cut(s)	477, 1897, 1957, 2056, 2063
BccI	CCATC	8 cut(s)	895, 1084, 1159, 1549, 1649, 1862, 1925, 2050
BceAI	ACGGC	3 cut(s)	230, 490, 601
BcgI	CGANNNNNNTGC	2 cut(s)	421, 455
BciT130I	CCWGG	9 cut(s)	331, 464, 632, 1362, 1389, 1520, 1643, 1737, 1773
BciVI	GTATCC	2 cut(s)	374, 1362
BclI	TGATCA	2 cut(s)	1593, 1680
BcnI	CCSGG	1 cut(s)	1189
BcoDI	GTCTC	4 cut(s)	347, 358, 509, 1195
BfaI	CTAG	5 cut(s)	291, 1715, 1889, 1997, 2115
BfuI	GTATCC	2 cut(s)	374, 1362
BglI	GCCNNNNNGGC	4 cut(s)	21, 595, 803, 923
Bme18I	GGWCC	5 cut(s)	333, 460, 1185, 1804, 2109
BmgT120I	GGNCC	8 cut(s)	333, 460, 795, 915, 1185, 1382, 1804, 2109
BmiI	GGNNCC	3 cut(s)	335, 609, 2111
BmsI	GCATC	5 cut(s)	729, 1212, 1558, 1612, 1914
BmtI	GCTAGC	1 cut(s)	1892
BpiI	GAAGAC	2 cut(s)	1406, 1543
BplI	GAGNNNNNCTC	6 cut(s)	865, 897, 1192, 1224, 1210, 1242
BpmI	CTGGAG	2 cut(s)	779, 1410
Bpu10I	CCTNAGC	5 cut(s)	593, 623, 713, 927, 1767
Bpu14I	TTCGAA	1 cut(s)	935
BpuEI	CTTGAG	7 cut(s)	164, 300, 392, 892, 1313, 1319, 2104
BpuMI	CCSGG	1 cut(s)	1189
BsaBI	GATNNNNATC	1 cut(s)	1760
BsaHI	GRCGYC	1 cut(s)	1437
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	4 cut(s)	337, 1050, 1056, 1188
Bsc4I	CCNNNNNNNGG	5 cut(s)	954, 1062, 1394, 1642, 1772
Bse118I	RCCGGY	3 cut(s)	457, 643, 679
Bse3DI	GCAATG	1 cut(s)	1176
Bse8I	GATNNNNATC	1 cut(s)	1760
BseBI	CCWGG	9 cut(s)	331, 464, 632, 1362, 1389, 1520, 1643, 1737, 1773
BseDI	CCNNGG	4 cut(s)	337, 1050, 1056, 1188
BseGI	GGATG	7 cut(s)	1095, 1123, 1227, 1255, 1270, 1573, 1660
BseJI	GATNNNNATC	1 cut(s)	1760
BseLI	CCNNNNNNNGG	5 cut(s)	954, 1062, 1394, 1642, 1772
BseMI	GCAATG	1 cut(s)	1176
BseMII	CTCAG	7 cut(s)	584, 614, 704, 821, 941, 1241, 1932
BsePI	GCGCGC	1 cut(s)	1811
BseXI	GCAGC	5 cut(s)	477, 1897, 1957, 2056, 2063
BseYI	CCCAGC	3 cut(s)	56, 375, 952
BsgI	GTGCAG	2 cut(s)	1902, 1956
Bsh1236I	CGCG	4 cut(s)	240, 267, 950, 1813
Bsh1285I	CGRYCG	1 cut(s)	435
BsiEI	CGRYCG	1 cut(s)	435
BsiHKAI	GWGCWC	3 cut(s)	324, 1210, 1513
BsiSI	CCGG	8 cut(s)	428, 458, 512, 602, 644, 680, 886, 1188
BslFI	GGGAC	2 cut(s)	319, 2095
BslI	CCNNNNNNNGG	5 cut(s)	954, 1062, 1394, 1642, 1772
BsmAI	GTCTC	4 cut(s)	347, 358, 509, 1195
BsmBI	CGTCTC	2 cut(s)	358, 1195
BsmFI	GGGAC	2 cut(s)	319, 2095
BsmI	GAATGC	2 cut(s)	645, 1998
Bso31I	GGTCTC	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	935
Bsp1286I	GDGCHC	6 cut(s)	26, 164, 324, 1195, 1210, 1513
Bsp143I	GATC	7 cut(s)	432, 1284, 1593, 1680, 1717, 1747, 2083
BspCNI	CTCAG	7 cut(s)	585, 615, 705, 820, 940, 1240, 1933
BspFNI	CGCG	4 cut(s)	240, 267, 950, 1813
BspHI	TCATGA	1 cut(s)	1179
BspLI	GGNNCC	3 cut(s)	335, 609, 2111
BspOI	GCTAGC	1 cut(s)	1892
BspPI	GGATC	1 cut(s)	1712
BspT104I	TTCGAA	1 cut(s)	935
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	1176
BsrFI	RCCGGY	3 cut(s)	457, 643, 679
BssAI	RCCGGY	3 cut(s)	457, 643, 679
BssECI	CCNNGG	4 cut(s)	337, 1050, 1056, 1188
BssHII	GCGCGC	1 cut(s)	1811
BssMI	GATC	7 cut(s)	432, 1284, 1593, 1680, 1717, 1747, 2083
BssNI	GRCGYC	1 cut(s)	1437
BssSI	CACGAG	2 cut(s)	1194, 1500
BssT1I	CCWWGG	1 cut(s)	337
Bst2BI	CACGAG	2 cut(s)	1194, 1500
Bst2UI	CCWGG	9 cut(s)	331, 464, 632, 1362, 1389, 1520, 1643, 1737, 1773
Bst4CI	ACNGT	4 cut(s)	202, 362, 499, 988
Bst6I	CTCTTC	1 cut(s)	1339
BstACI	GRCGYC	1 cut(s)	1437
BstBI	TTCGAA	1 cut(s)	935
BstDEI	CTNAG	9 cut(s)	593, 623, 713, 807, 927, 995, 1227, 1767, 1941
BstF5I	GGATG	7 cut(s)	1095, 1123, 1227, 1255, 1270, 1573, 1660
BstFNI	CGCG	4 cut(s)	240, 267, 950, 1813
BstHHI	GCGC	6 cut(s)	242, 269, 495, 952, 1813, 1815
BstKTI	GATC	7 cut(s)	435, 1287, 1596, 1683, 1720, 1750, 2086
BstMAI	GTCTC	4 cut(s)	347, 358, 509, 1195
BstMBI	GATC	7 cut(s)	432, 1284, 1593, 1680, 1717, 1747, 2083
BstMCI	CGRYCG	1 cut(s)	435
BstNI	CCWGG	9 cut(s)	331, 464, 632, 1362, 1389, 1520, 1643, 1737, 1773
BstNSI	RCATGY	1 cut(s)	416
BstUI	CGCG	4 cut(s)	240, 267, 950, 1813
BstV1I	GCAGC	5 cut(s)	477, 1897, 1957, 2056, 2063
BstV2I	GAAGAC	2 cut(s)	1406, 1543
BstX2I	RGATCY	1 cut(s)	1717
BstXI	CCANNNNNNTGG	1 cut(s)	952
BstYI	RGATCY	1 cut(s)	1717
BsuI	GTATCC	2 cut(s)	374, 1362
BtgZI	GCGATG	1 cut(s)	2069
BtsCI	GGATG	7 cut(s)	1095, 1123, 1227, 1255, 1270, 1573, 1660
CaiI	CAGNNNCTG	1 cut(s)	1642
CciI	TCATGA	1 cut(s)	1179
CfoI	GCGC	6 cut(s)	242, 269, 495, 952, 1813, 1815
Cfr10I	RCCGGY	3 cut(s)	457, 643, 679
Cfr13I	GGNCC	8 cut(s)	333, 460, 795, 915, 1185, 1382, 1804, 2109
CseI	GACGC	2 cut(s)	559, 1426
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	7 cut(s)	413, 799, 1180, 1325, 1808, 1921, 2025
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	9 cut(s)	593, 623, 713, 807, 927, 995, 1227, 1767, 1941
DpnI	GATC	7 cut(s)	434, 1286, 1595, 1682, 1719, 1749, 2085
DpnII	GATC	7 cut(s)	432, 1284, 1593, 1680, 1717, 1747, 2083
EaeI	YGGCCR	1 cut(s)	942
Eam1104I	CTCTTC	1 cut(s)	1339
EarI	CTCTTC	1 cut(s)	1339
EciI	GGCGGA	3 cut(s)	199, 722, 1844
Ecl136II	GAGCTC	2 cut(s)	322, 1208
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	5 cut(s)	26, 164, 324, 1195, 1210
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	5 cut(s)	333, 460, 1185, 1804, 2109
Eco53kI	GAGCTC	2 cut(s)	322, 1208
EcoICRI	GAGCTC	2 cut(s)	322, 1208
EcoRII	CCWGG	9 cut(s)	329, 462, 630, 1360, 1387, 1518, 1641, 1735, 1771
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	5 cut(s)	26, 164, 324, 1195, 1210
ErhI	CCWWGG	1 cut(s)	337
Esp3I	CGTCTC	2 cut(s)	358, 1195
FaeI	CATG	7 cut(s)	416, 802, 1183, 1328, 1811, 1924, 2028
FalI	AAGNNNNNCTT	2 cut(s)	2113, 2145
FaqI	GGGAC	2 cut(s)	319, 2095
FatI	CATG	7 cut(s)	412, 798, 1179, 1324, 1807, 1920, 2024
FbaI	TGATCA	2 cut(s)	1593, 1680
FokI	GGATG	7 cut(s)	1102, 1130, 1234, 1262, 1277, 1580, 1667
FriOI	GRGCYC	5 cut(s)	26, 164, 324, 1195, 1210
FspBI	CTAG	5 cut(s)	291, 1715, 1889, 1997, 2115
FspI	TGCGCA	1 cut(s)	494
GlaI	GCGC	6 cut(s)	241, 268, 494, 951, 1812, 1814
GsaI	CCCAGC	3 cut(s)	60, 379, 956
GsuI	CTGGAG	2 cut(s)	779, 1410
HapII	CCGG	8 cut(s)	428, 458, 512, 602, 644, 680, 886, 1188
HgaI	GACGC	2 cut(s)	559, 1426
HhaI	GCGC	6 cut(s)	242, 269, 495, 952, 1813, 1815
Hin1I	GRCGYC	1 cut(s)	1437
Hin1II	CATG	7 cut(s)	416, 802, 1183, 1328, 1811, 1924, 2028
Hin6I	GCGC	6 cut(s)	240, 267, 493, 950, 1811, 1813
HinP1I	GCGC	6 cut(s)	240, 267, 493, 950, 1811, 1813
HincII	GTYRAC	2 cut(s)	574, 1441
HindII	GTYRAC	2 cut(s)	574, 1441
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	7 cut(s)	93, 398, 479, 560, 866, 932, 1150
HpaII	CCGG	8 cut(s)	428, 458, 512, 602, 644, 680, 886, 1188
HphI	GGTGA	1 cut(s)	1439
Hpy166II	GTNNAC	4 cut(s)	574, 1441, 1610, 1840
Hpy188I	TCNGA	9 cut(s)	133, 301, 810, 1264, 1508, 1733, 1752, 2088, 2149
Hpy8I	GTNNAC	4 cut(s)	574, 1441, 1610, 1840
Hpy99I	CGWCG	3 cut(s)	353, 511, 866
HpyCH4III	ACNGT	4 cut(s)	202, 362, 499, 988
HpyCH4IV	ACGT	1 cut(s)	1618
HpyF3I	CTNAG	9 cut(s)	593, 623, 713, 807, 927, 995, 1227, 1767, 1941
HpySE526I	ACGT	1 cut(s)	1618
Hsp92I	GRCGYC	1 cut(s)	1437
Hsp92II	CATG	7 cut(s)	416, 802, 1183, 1328, 1811, 1924, 2028
HspAI	GCGC	6 cut(s)	240, 267, 493, 950, 1811, 1813
KroI	GCCGGC	2 cut(s)	643, 679
KroNI	GCCGGC	2 cut(s)	645, 681
Ksp22I	TGATCA	2 cut(s)	1593, 1680
Kzo9I	GATC	7 cut(s)	432, 1284, 1593, 1680, 1717, 1747, 2083
LmnI	GCTCC	9 cut(s)	384, 709, 727, 754, 1129, 1144, 1543, 1582, 1644
Lsp1109I	GCAGC	5 cut(s)	477, 1897, 1957, 2056, 2063
LweI	GCATC	5 cut(s)	729, 1212, 1558, 1612, 1914
MaeI	CTAG	5 cut(s)	291, 1715, 1889, 1997, 2115
MaeII	ACGT	1 cut(s)	1618
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	7 cut(s)	434, 1286, 1595, 1682, 1719, 1749, 2085
MboI	GATC	7 cut(s)	432, 1284, 1593, 1680, 1717, 1747, 2083
MflI	RGATCY	1 cut(s)	1717
MhlI	GDGCHC	6 cut(s)	26, 164, 324, 1195, 1210, 1513
MlsI	TGGCCA	1 cut(s)	944
MluNI	TGGCCA	1 cut(s)	944
MlyI	GAGTC	2 cut(s)	554, 875
MmeI	TCCRAC	3 cut(s)	1465, 1545, 1555
Mox20I	TGGCCA	1 cut(s)	944
MroNI	GCCGGC	2 cut(s)	643, 679
MscI	TGGCCA	1 cut(s)	944
MseI	TTAA	2 cut(s)	1353, 1632
Msp20I	TGGCCA	1 cut(s)	944
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	8 cut(s)	428, 458, 512, 602, 644, 680, 886, 1188
Mva1269I	GAATGC	2 cut(s)	645, 1998
MvaI	CCWGG	9 cut(s)	331, 464, 632, 1362, 1389, 1520, 1643, 1737, 1773
MvnI	CGCG	4 cut(s)	240, 267, 950, 1813
NaeI	GCCGGC	2 cut(s)	645, 681
NciI	CCSGG	1 cut(s)	1189
NdeII	GATC	7 cut(s)	432, 1284, 1593, 1680, 1717, 1747, 2083
NgoMIV	GCCGGC	2 cut(s)	643, 679
NheI	GCTAGC	1 cut(s)	1888
NlaIII	CATG	7 cut(s)	416, 802, 1183, 1328, 1811, 1924, 2028
NlaIV	GGNNCC	3 cut(s)	335, 609, 2111
NmeAIII	GCCGAG	3 cut(s)	478, 1075, 1081
NsbI	TGCGCA	1 cut(s)	494
NspI	RCATGY	1 cut(s)	416
NspV	TTCGAA	1 cut(s)	935
PagI	TCATGA	1 cut(s)	1179
PauI	GCGCGC	1 cut(s)	1811
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 1201
PctI	GAATGC	2 cut(s)	645, 1998
PdiI	GCCGGC	2 cut(s)	645, 681
PfeI	GAWTC	5 cut(s)	93, 398, 479, 932, 1150
PflMI	CCANNNNNTGG	1 cut(s)	1642
PfoI	TCCNGGA	1 cut(s)	1387
Ple19I	CGATCG	1 cut(s)	435
PleI	GAGTC	2 cut(s)	554, 874
PpsI	GAGTC	2 cut(s)	554, 874
Psp124BI	GAGCTC	2 cut(s)	324, 1210
Psp6I	CCWGG	9 cut(s)	329, 462, 630, 1360, 1387, 1518, 1641, 1735, 1771
PspFI	CCCAGC	3 cut(s)	56, 375, 952
PspGI	CCWGG	9 cut(s)	329, 462, 630, 1360, 1387, 1518, 1641, 1735, 1771
PspN4I	GGNNCC	3 cut(s)	335, 609, 2111
PspPI	GGNCC	8 cut(s)	333, 460, 795, 915, 1185, 1382, 1804, 2109
PsrI	GAACNNNNNNTAC	2 cut(s)	1930, 1962
PstNI	CAGNNNCTG	1 cut(s)	1642
PsuI	RGATCY	1 cut(s)	1717
PteI	GCGCGC	1 cut(s)	1811
PvuI	CGATCG	1 cut(s)	435
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
SacI	GAGCTC	2 cut(s)	324, 1210
SaqAI	TTAA	2 cut(s)	1353, 1632
Sau3AI	GATC	7 cut(s)	432, 1284, 1593, 1680, 1717, 1747, 2083
Sau96I	GGNCC	8 cut(s)	333, 460, 795, 915, 1185, 1382, 1804, 2109
SchI	GAGTC	2 cut(s)	554, 875
SduI	GDGCHC	6 cut(s)	26, 164, 324, 1195, 1210, 1513
SfaNI	GCATC	5 cut(s)	729, 1212, 1558, 1612, 1914
SfuI	TTCGAA	1 cut(s)	935
SinI	GGWCC	5 cut(s)	333, 460, 1185, 1804, 2109
SmlI	CTYRAG	7 cut(s)	179, 315, 407, 871, 1292, 1298, 2119
SmoI	CTYRAG	7 cut(s)	179, 315, 407, 871, 1292, 1298, 2119
SspMI	CTAG	5 cut(s)	291, 1715, 1889, 1997, 2115
SstI	GAGCTC	2 cut(s)	324, 1210
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	4 cut(s)	202, 362, 499, 988
TaiI	ACGT	1 cut(s)	1621
TaqI	TCGA	7 cut(s)	171, 356, 384, 401, 435, 665, 935
TauI	GCSGC	7 cut(s)	245, 445, 589, 592, 601, 707, 1110
TfiI	GAWTC	5 cut(s)	93, 398, 479, 932, 1150
Tru1I	TTAA	2 cut(s)	1353, 1632
Tru9I	TTAA	2 cut(s)	1353, 1632
TseI	GCWGC	5 cut(s)	490, 1910, 1970, 2051, 2069
TspDTI	ATGAA	7 cut(s)	21, 815, 1168, 1175, 1543, 2061, 2170
Van91I	CCANNNNNTGG	1 cut(s)	1642
VpaK11BI	GGWCC	5 cut(s)	333, 460, 1185, 1804, 2109
XapI	RAATTY	4 cut(s)	553, 1356, 1794, 2099
XbaI	TCTAGA	2 cut(s)	290, 1714
XceI	RCATGY	1 cut(s)	416
XspI	CTAG	5 cut(s)	291, 1715, 1889, 1997, 2115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.