Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005648

Physical Location & Seq

Genomic Coordinates Reverse (-)

6731589 .. 6735563

Gene Structure 3975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G090700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGCCAGAGCTACCGGAGGTGGAGGCGGCGCGGAGGGCCATAGAGGAAAACTGTCTGGGGAAGAAGATAACGAAAGCGCTCATCGCCGATGACCCCAAAGTCATCGACGGAGTTTCTCGCGCTGACTTCGAGGCGTCGCTCTTGGGAAAGACCATCGTCTCTGCTCACCGCAAGGGCAAGAACTTATGGCTCCGCCTCGACTCTCCTCCTTTCCCTTCCTTCCAATTCGGGATGGCGGGTGCTATATATATTAAAGGGGTCGCGGTCACGAAATATAAGAGGTCTGCTGTAAAGGACACTGATGAGTGGCCTTCCAAGTATTCCAAGTTATTTGTTGAACTGGATGATGGTCTGGAGTTCTCTTTCACTGACAAGAGGCGATTTGCTAGAGTCCGCTTGCTCAAAGATCCAGCATCTGTGCCCCCCATATCTGAGCTTGGGCCTGATGCTCTCTTGGAGCCTATGACAGGGGATGAACTTTTTGAATCCTTGAGCAAGAAGAAAATTGCAATTAAGACTCTATTGCTTGATCAGAGTTACATTTCAGGAATTGGAAATTGGGTTGCTGATGAAGTACTATACCAAGCAAGAATTCATCCAGAGCAAAGTGCTGCCAGCTTGTCGAAAGAAAATTATGGAAATTTGCACAAGAGCATCAAAGAGGTTATCGAAAAATCACTTGAAGTTGGGGCAGATAGTAGTCAATTTCCAAGTAATTGGATTTTTCATTCCCGTGAAAAGAAGCCTGGAAAGGCTTTTGTTGATGGGAGGAAAATTGACTTTATCACGGTTGGTGGCAGGACTACAGCGTATGTACCAGAGCTTCAGAAGTTAAGTGGACAGCAAGCTGCCAGAGCAGGGAGTAAACAAGCTAACAAGAGAAAAGGGCATGGTGATGGTGTCAAGGATGATGTTAATGAAGCAGCGAGTGATGAAGAAGTTAATGGAAGTGTGCAGTCAAAGAAAGGGAGGAAGCCTAGAGGTCAAGGTAATAAGTCATCAGCTAAAAGAAAATCTAAAGAGAGTGATGATGAAGACAATGCCAATGACAGTGAGGATGATGACGATGATGACAATGATGATCATCATGATGAAGATCAAAAGAATAAAACAAGAAAAGTGACCAATAATAAGCAATCCAAGGTGGAGAAGACATCAAAGAAAACAGTCCAGACCAGTCAGAATAGTAAGAAGAAGAAGAAAGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Fapy_DNA_glyco H2TH

Protein Analysis

404

Amino Acids

44.7

Weight (kDa)

9.08

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52500 AT1G52500 AT1G52500 AT1G52500 AT1G52500
fragaria_vesca	FvH4_6g29401 FvH4_6g29401 FvH4_6g29401 FvH4_6g29401 FvH4_6g29401 FvH4_6g29401 FvH4_6g29401
malus_domestica	MD17G1215000.v1.1
prunus_persica	Prupe.3G090700_v2.0.a1 Prupe.3G090700_v2.0.a1 Prupe.3G090700_v2.0.a1 Prupe.3G090700_v2.0.a1
pyrus_communis	pycom17g21950
rosa_chinensis	RchiOBHm_Chr2g0134861
rosa_laevigata	RLG00000019425
rosa_multiflora	Rmu_sc0004406.1_g000012
rosa_roxburghii	Rroxscaffold_2G00109710
rosa_rugosa	Rorug02G0320400 Rorug02G0320500
rosa_samantha	Rh2BG378100 Rh2CG356600 Rh2DG394900
rosa_wichuraiana	Rw2G030320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
AccII	CGCG	3 cut(s)	31, 120, 263
AciI	CCGC	7 cut(s)	26, 31, 169, 193, 236, 263, 394
AclWI	GGATC	1 cut(s)	401
AcsI	RAATTY	2 cut(s)	591, 640
AcuI	CTGAAG	1 cut(s)	809
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	2 cut(s)	576, 816
AfeI	AGCGCT	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	467, 858
AgsI	TTSAA	3 cut(s)	338, 485, 683
AjnI	CCWGG	1 cut(s)	745
AjuI	GAANNNNNNNTTGG	4 cut(s)	541, 573, 576, 608
AluBI	AGCT	7 cut(s)	10, 436, 618, 823, 848, 872, 1004
AluI	AGCT	7 cut(s)	10, 436, 618, 823, 848, 872, 1004
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	401
AlwNI	CAGNNNCTG	1 cut(s)	416
Aor51HI	AGCGCT	1 cut(s)	78
AoxI	GGCC	3 cut(s)	36, 308, 440
ApeKI	GCWGC	3 cut(s)	611, 848, 923
ApoI	RAATTY	2 cut(s)	591, 640
AspLEI	GCGC	3 cut(s)	31, 79, 122
AspS9I	GGNCC	2 cut(s)	36, 440
AsuHPI	GGTGA	2 cut(s)	158, 905
BaeGI	GKGCMC	1 cut(s)	423
BarI	GAAGNNNNNNTAC	2 cut(s)	807, 839
BbsI	GAAGAC	2 cut(s)	1041, 1157
BbvI	GCAGC	3 cut(s)	598, 835, 935
BccI	CCATC	5 cut(s)	161, 226, 341, 758, 890
BciT130I	CCWGG	1 cut(s)	747
BclI	TGATCA	2 cut(s)	529, 1081
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	2 cut(s)	387, 978
BfmI	CTRYAG	1 cut(s)	804
BfoI	RGCGCY	1 cut(s)	80
BisI	GCNGC	4 cut(s)	27, 612, 849, 924
BlsI	GCNGC	4 cut(s)	28, 613, 850, 925
BmcAI	AGTACT	1 cut(s)	576
Bme1390I	CCNGG	1 cut(s)	747
BmgT120I	GGNCC	2 cut(s)	36, 440
BmiI	GGNNCC	2 cut(s)	191, 459
BmrFI	CCNGG	1 cut(s)	747
BmsI	GCATC	3 cut(s)	422, 436, 663
BoxI	GACNNNNGTC	1 cut(s)	155
BpiI	GAAGAC	2 cut(s)	1041, 1157
BpmI	CTGGAG	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	511
BsaBI	GATNNNNATC	2 cut(s)	1083, 1095
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	1140
BsaWI	WCCGGW	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 858
Bse1I	ACTGG	2 cut(s)	345, 1176
Bse8I	GATNNNNATC	2 cut(s)	1083, 1095
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	1 cut(s)	1140
BseGI	GGATG	6 cut(s)	237, 349, 478, 595, 913, 1063
BseJI	GATNNNNATC	2 cut(s)	1083, 1095
BseLI	CCNNNNNNNGG	2 cut(s)	467, 858
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	2 cut(s)	345, 1176
BseRI	GAGGAG	1 cut(s)	195
BseSI	GKGCMC	1 cut(s)	423
BseXI	GCAGC	3 cut(s)	598, 835, 935
BsgI	GTGCAG	1 cut(s)	974
Bsh1236I	CGCG	3 cut(s)	31, 120, 263
BshFI	GGCC	3 cut(s)	38, 310, 442
BsiSI	CCGG	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	467, 858
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsnI	GGCC	3 cut(s)	38, 310, 442
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	4 cut(s)	406, 529, 1081, 1096
BspACI	CCGC	7 cut(s)	26, 31, 169, 193, 236, 263, 394
BspANI	GGCC	3 cut(s)	38, 310, 442
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	3 cut(s)	31, 120, 263
BspHI	TCATGA	1 cut(s)	1087
BspLI	GGNNCC	2 cut(s)	191, 459
BspPI	GGATC	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	345, 1176
BssECI	CCNNGG	1 cut(s)	1140
BssMI	GATC	4 cut(s)	406, 529, 1081, 1096
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	1140
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	4 cut(s)	53, 790, 1052, 1168
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	3 cut(s)	398, 616, 846
BstDEI	CTNAG	1 cut(s)	432
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	6 cut(s)	237, 349, 478, 595, 913, 1063
BstFNI	CGCG	3 cut(s)	31, 120, 263
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	3 cut(s)	31, 79, 122
BstKTI	GATC	4 cut(s)	409, 532, 1084, 1099
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	4 cut(s)	406, 529, 1081, 1096
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 83, 854
BstNI	CCWGG	1 cut(s)	747
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	745
BstSFI	CTRYAG	1 cut(s)	804
BstSLI	GKGCMC	1 cut(s)	423
BstUI	CGCG	3 cut(s)	31, 120, 263
BstV1I	GCAGC	3 cut(s)	598, 835, 935
BstV2I	GAAGAC	2 cut(s)	1041, 1157
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	3 cut(s)	38, 310, 442
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	6 cut(s)	237, 349, 478, 595, 913, 1063
BtsIMutI	CAGTG	3 cut(s)	297, 366, 1057
Cac8I	GCNNGC	3 cut(s)	398, 616, 846
CaiI	CAGNNNCTG	1 cut(s)	416
CciI	TCATGA	1 cut(s)	1087
CfoI	GCGC	3 cut(s)	31, 79, 122
Cfr13I	GGNCC	2 cut(s)	36, 440
CseI	GACGC	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	575, 815
CviAII	CATG	2 cut(s)	890, 1088
CviQI	GTAC	2 cut(s)	575, 815
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	4 cut(s)	408, 531, 1083, 1098
DpnII	GATC	4 cut(s)	406, 529, 1081, 1096
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	1140
Eco47III	AGCGCT	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	809
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoRI	GAATTC	1 cut(s)	591
EcoRII	CCWGG	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	1140
ErhI	CCWWGG	1 cut(s)	1140
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	2 cut(s)	893, 1091
FatI	CATG	2 cut(s)	889, 1087
FauI	CCCGC	1 cut(s)	229
FbaI	TGATCA	2 cut(s)	529, 1081
Fnu4HI	GCNGC	4 cut(s)	27, 612, 849, 924
FokI	GGATG	6 cut(s)	244, 356, 485, 582, 920, 1070
Fsp4HI	GCNGC	4 cut(s)	27, 612, 849, 924
FspBI	CTAG	2 cut(s)	387, 978
GlaI	GCGC	3 cut(s)	30, 78, 121
GluI	GCNGC	4 cut(s)	27, 612, 849, 924
GsuI	CTGGAG	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	38, 310, 442
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	123
HhaI	GCGC	3 cut(s)	31, 79, 122
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	893, 1091
Hin6I	GCGC	3 cut(s)	29, 77, 120
HinP1I	GCGC	3 cut(s)	29, 77, 120
HinfI	GANTC	4 cut(s)	200, 390, 485, 517
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	2 cut(s)	158, 905
Hpy166II	GTNNAC	2 cut(s)	839, 866
Hpy188I	TCNGA	4 cut(s)	433, 534, 828, 1182
Hpy188III	TCNNGA	7 cut(s)	229, 268, 353, 546, 599, 1088, 1171
Hpy8I	GTNNAC	2 cut(s)	839, 866
Hpy99I	CGWCG	2 cut(s)	110, 139
HpyAV	CCTTC	3 cut(s)	225, 229, 321
HpyCH4III	ACNGT	4 cut(s)	53, 790, 1052, 1168
HpyCH4V	TGCA	3 cut(s)	509, 646, 955
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 83, 854
HpyF3I	CTNAG	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	893, 1091
HspAI	GCGC	3 cut(s)	29, 77, 120
Ksp22I	TGATCA	2 cut(s)	529, 1081
Kzo9I	GATC	4 cut(s)	406, 529, 1081, 1096
LmnI	GCTCC	2 cut(s)	195, 457
Lsp1109I	GCAGC	3 cut(s)	598, 835, 935
LweI	GCATC	3 cut(s)	422, 436, 663
MaeI	CTAG	2 cut(s)	387, 978
MaeIII	GTNAC	3 cut(s)	265, 536, 1120
MalI	GATC	4 cut(s)	408, 531, 1083, 1098
MboI	GATC	4 cut(s)	406, 529, 1081, 1096
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	423
MlyI	GAGTC	3 cut(s)	194, 399, 511
MseI	TTAA	5 cut(s)	252, 513, 833, 915, 942
MslI	CAYNNNNRTG	3 cut(s)	732, 894, 1089
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	747
MvnI	CGCG	3 cut(s)	31, 120, 263
MwoI	GCNNNNNNNGC	3 cut(s)	35, 83, 854
NdeII	GATC	4 cut(s)	406, 529, 1081, 1096
NlaIII	CATG	2 cut(s)	893, 1091
NlaIV	GGNNCC	2 cut(s)	191, 459
NmuCI	GTSAC	2 cut(s)	265, 1120
PagI	TCATGA	1 cut(s)	1087
PfeI	GAWTC	1 cut(s)	485
PkrI	GCNGC	4 cut(s)	28, 613, 850, 925
PleI	GAGTC	3 cut(s)	194, 398, 511
PpsI	GAGTC	3 cut(s)	194, 398, 511
PshAI	GACNNNNGTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	2 cut(s)	191, 459
PspPI	GGNCC	2 cut(s)	36, 440
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	2 cut(s)	576, 816
RsaNI	GTAC	2 cut(s)	575, 815
RseI	CAYNNNNRTG	3 cut(s)	732, 894, 1089
SaqAI	TTAA	5 cut(s)	252, 513, 833, 915, 942
SatI	GCNGC	4 cut(s)	27, 612, 849, 924
Sau3AI	GATC	4 cut(s)	406, 529, 1081, 1096
Sau96I	GGNCC	2 cut(s)	36, 440
ScaI	AGTACT	1 cut(s)	576
SchI	GAGTC	3 cut(s)	194, 399, 511
ScrFI	CCNGG	1 cut(s)	747
SduI	GDGCHC	1 cut(s)	423
SfaNI	GCATC	3 cut(s)	422, 436, 663
SfcI	CTRYAG	1 cut(s)	804
SmiMI	CAYNNNNRTG	3 cut(s)	732, 894, 1089
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
SsiI	CCGC	7 cut(s)	26, 31, 169, 193, 236, 263, 394
SspMI	CTAG	2 cut(s)	387, 978
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	1 cut(s)	1140
TaaI	ACNGT	4 cut(s)	53, 790, 1052, 1168
TaqI	TCGA	5 cut(s)	105, 129, 198, 623, 669
TatI	WGTACW	1 cut(s)	574
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	5 cut(s)	252, 513, 833, 915, 942
Tru9I	TTAA	5 cut(s)	252, 513, 833, 915, 942
TscAI	CASTG	3 cut(s)	304, 373, 1057
TseFI	GTSAC	2 cut(s)	265, 1120
TseI	GCWGC	3 cut(s)	611, 848, 923
Tsp45I	GTSAC	2 cut(s)	265, 1120
TspDTI	ATGAA	8 cut(s)	489, 584, 585, 716, 933, 948, 1047, 1107
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	3 cut(s)	304, 373, 1057
XagI	CCTNNNNNAGG	1 cut(s)	465
XapI	RAATTY	2 cut(s)	591, 640
XspI	CTAG	2 cut(s)	387, 978
ZrmI	AGTACT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.