Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005648

Physical Location & Seq

Genomic Coordinates Reverse (-)

20357514 .. 20361282

Gene Structure 3769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g21950.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGCCGGAGCTACCGGAGGTGGAGGCGGCTCGGAGGGCCGTAGAGGAACACTGCGTAGGGAAGAAGATAACGAAAGCACTCATCGCCGACGACTCCAAAGTCATCGATGGAGTCTCACGCGCCGACTTCGAGGCCTCTCTCTTGGGAAAGACCATCGTCTCCGCTCACCGCAAGGGCAAGAATATGTGGCTCTGCCTCGACTCTCCTCCCTTTCCTTCCTTCCAATTCGGAATGGCGGGTGCTGTATATATTAAAGGGGTCGCCGTCACGAAATATAAGAGGTCTGCTGTAAAGGACACTGATGAGTGGCCTTCCAAGTATTCCAAGTTCTTTGTTGAATTGGATGATGGTCTGGAGTTCTCTTTCACTGACAAGAGGCGATTTGCTAGAGTCCGCTTGCTGAAAGATCCAACTTCTGTGCCCCCCATATCTGAGCTTGGGCCCGATGCTCTCTTGGAGCCTATGACAGTGGATGAACTTTTTGAATGCTTCAGCAAGAAGAAAATTGCAATTAAGACCCTGTTGCTTGATCAGAGTGTTATTTCTGGAATTGGCAATTGGGTTGCTGATGAAGTACTCTACCAAGCAAGAATTCATCCGGAGCAAGGTGCTGCGAGCCTGTCGAAAGAAAATTGTGCAGCTTTACACAAGAGCATTAAAGAGGTACTTGAAAAATCCCTTGAAGTTGGAGCAGATAGTAGTCAATTTCCTAGTGATTGGATTTTTCATTCCCGTGAAAAGAAGCCTGGAAAGGCTTTTGTTGATGGGAAGAAAATTGAGTTTATCACAGTTGGTAGCAGGACTTCAGCATTTGTACCAGAGCTTCAGAAGTTAAGTGGACCGCAAGCTTCCAAAGCAGCAAGTAAACAAGCTAACAAGAAAAAAGGGCGTGGTGATGTTGTTGATGAAGCAGCAAGTGATGAAGAAGCCAATGAAAATGAAAAATCGAAGAAGGGGAGGAATCCTAAAGGTCAAGGTAAGAGGGCGTCAGCGAAAAGAAAATCGAAAGAGAGTGATGATGAAGACAAGGACAGTGATGATGATGCTGACGACGATGATGACCATCAGGATGAAGATCAAAAGAAGAAATCAAGAAAAGGTGTCAATAATAAGCAATCCAAGGCAGAGAAGACATCAAAGGCAAAGGTGCAGACCAGTAAAAGTGGTAAGAAGCTGAAGAAAGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Fapy_DNA_glyco H2TH

Protein Analysis

397

Amino Acids

43.69

Weight (kDa)

9.03

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52500 AT1G52500 AT1G52500 AT1G52500 AT1G52500
fragaria_vesca	FvH4_6g29401 FvH4_6g29401 FvH4_6g29401 FvH4_6g29401 FvH4_6g29401 FvH4_6g29401 FvH4_6g29401
malus_domestica	MD17G1215000.v1.1
prunus_persica	Prupe.3G090700_v2.0.a1 Prupe.3G090700_v2.0.a1 Prupe.3G090700_v2.0.a1 Prupe.3G090700_v2.0.a1
pyrus_communis	pycom17g21950
rosa_chinensis	RchiOBHm_Chr2g0134861
rosa_laevigata	RLG00000019425
rosa_multiflora	Rmu_sc0004406.1_g000012
rosa_roxburghii	Rroxscaffold_2G00109710
rosa_rugosa	Rorug02G0320400 Rorug02G0320500
rosa_samantha	Rh2BG378100 Rh2CG356600 Rh2DG394900
rosa_wichuraiana	Rw2G030320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
AccBSI	CCGCTC	1 cut(s)	164
AccII	CGCG	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	598
AciI	CCGC	6 cut(s)	26, 162, 169, 236, 394, 842
AclWI	GGATC	1 cut(s)	401
AcsI	RAATTY	1 cut(s)	591
AcuI	CTGAAG	3 cut(s)	475, 789, 809
AcyI	GRCGYC	1 cut(s)	986
AfaI	GTAC	3 cut(s)	576, 666, 816
AfiI	CCNNNNNNNGG	1 cut(s)	605
AgsI	TTSAA	4 cut(s)	338, 485, 671, 683
AjnI	CCWGG	1 cut(s)	745
AjuI	GAANNNNNNNTTGG	4 cut(s)	541, 573, 576, 608
AluBI	AGCT	7 cut(s)	10, 436, 641, 823, 848, 872, 1174
AluI	AGCT	7 cut(s)	10, 436, 641, 823, 848, 872, 1174
Alw26I	GTCTC	2 cut(s)	118, 163
AlwI	GGATC	1 cut(s)	401
Aor13HI	TCCGGA	1 cut(s)	598
AoxI	GGCC	4 cut(s)	36, 132, 308, 440
ApaI	GGGCCC	1 cut(s)	444
ApeKI	GCWGC	4 cut(s)	611, 638, 857, 911
ApoI	RAATTY	1 cut(s)	591
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	4 cut(s)	36, 440, 441, 839
AsuHPI	GGTGA	2 cut(s)	158, 905
AvaII	GGWCC	1 cut(s)	839
BaeGI	GKGCMC	2 cut(s)	423, 444
BanII	GRGCYC	1 cut(s)	444
BarI	GAAGNNNNNNTAC	4 cut(s)	787, 807, 819, 839
BbsI	GAAGAC	2 cut(s)	1029, 1136
BbvI	GCAGC	4 cut(s)	598, 650, 869, 923
BccI	CCATC	5 cut(s)	101, 161, 341, 758, 1071
BceAI	ACGGC	2 cut(s)	23, 248
BciT130I	CCWGG	1 cut(s)	747
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	2 cut(s)	118, 163
BfaI	CTAG	2 cut(s)	387, 711
BisI	GCNGC	5 cut(s)	27, 612, 639, 858, 912
BlsI	GCNGC	5 cut(s)	28, 613, 640, 859, 913
BmcAI	AGTACT	1 cut(s)	576
Bme1390I	CCNGG	1 cut(s)	747
Bme18I	GGWCC	1 cut(s)	839
BmgT120I	GGNCC	4 cut(s)	36, 440, 441, 839
BmiI	GGNNCC	2 cut(s)	442, 459
BmrFI	CCNGG	1 cut(s)	747
BmsI	GCATC	2 cut(s)	436, 1033
BoxI	GACNNNNGTC	1 cut(s)	155
BpiI	GAAGAC	2 cut(s)	1029, 1136
BpmI	CTGGAG	1 cut(s)	374
Bsa29I	ATCGAT	1 cut(s)	105
BsaBI	GATNNNNATC	2 cut(s)	1062, 1074
BsaHI	GRCGYC	1 cut(s)	986
BsaJI	CCNNGG	1 cut(s)	1119
BsaWI	WCCGGW	2 cut(s)	13, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	605
Bse1I	ACTGG	1 cut(s)	1155
Bse8I	GATNNNNATC	2 cut(s)	1062, 1074
BseAI	TCCGGA	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	747
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	1119
BseGI	GGATG	4 cut(s)	349, 478, 595, 1075
BseJI	GATNNNNATC	2 cut(s)	1062, 1074
BseLI	CCNNNNNNNGG	1 cut(s)	605
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	1155
BseRI	GAGGAG	1 cut(s)	195
BseSI	GKGCMC	2 cut(s)	423, 444
BseXI	GCAGC	4 cut(s)	598, 650, 869, 923
BsgI	GTGCAG	2 cut(s)	657, 1169
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	4 cut(s)	38, 134, 310, 442
BshVI	ATCGAT	1 cut(s)	105
BsiSI	CCGG	3 cut(s)	5, 14, 599
BslI	CCNNNNNNNGG	1 cut(s)	605
BsmAI	GTCTC	2 cut(s)	118, 163
BsmBI	CGTCTC	1 cut(s)	163
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	4 cut(s)	38, 134, 310, 442
Bsp120I	GGGCCC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	423, 444
Bsp13I	TCCGGA	1 cut(s)	598
Bsp143I	GATC	3 cut(s)	406, 529, 1075
BspACI	CCGC	6 cut(s)	26, 162, 169, 236, 394, 842
BspANI	GGCC	4 cut(s)	38, 134, 310, 442
BspCNI	CTCAG	1 cut(s)	424
BspDI	ATCGAT	1 cut(s)	105
BspEI	TCCGGA	1 cut(s)	598
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	442, 459
BspPI	GGATC	1 cut(s)	401
BsrBI	CCGCTC	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	1155
BssECI	CCNNGG	1 cut(s)	1119
BssMI	GATC	3 cut(s)	406, 529, 1075
BssNI	GRCGYC	1 cut(s)	986
BssT1I	CCWWGG	1 cut(s)	1119
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	3 cut(s)	469, 790, 1034
BstACI	GRCGYC	1 cut(s)	986
BstC8I	GCNNGC	3 cut(s)	398, 616, 846
BstDEI	CTNAG	1 cut(s)	432
BstF5I	GGATG	4 cut(s)	349, 478, 595, 1075
BstFNI	CGCG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	3 cut(s)	409, 532, 1078
BstMAI	GTCTC	2 cut(s)	118, 163
BstMBI	GATC	3 cut(s)	406, 529, 1075
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 83, 854
BstNI	CCWGG	1 cut(s)	747
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	745
BstSLI	GKGCMC	2 cut(s)	423, 444
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	4 cut(s)	598, 650, 869, 923
BstV2I	GAAGAC	2 cut(s)	1029, 1136
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	4 cut(s)	38, 134, 310, 442
BsuTUI	ATCGAT	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	4 cut(s)	349, 478, 595, 1075
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	5 cut(s)	49, 297, 366, 474, 1039
Cac8I	GCNNGC	3 cut(s)	398, 616, 846
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	4 cut(s)	36, 440, 441, 839
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	1 cut(s)	975
Csp6I	GTAC	3 cut(s)	575, 665, 815
CviQI	GTAC	3 cut(s)	575, 665, 815
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	3 cut(s)	408, 531, 1077
DpnII	GATC	3 cut(s)	406, 529, 1075
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	1119
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	839
Eco57I	CTGAAG	3 cut(s)	475, 789, 809
EcoRI	GAATTC	1 cut(s)	591
EcoRII	CCWGG	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	1119
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	1119
Esp3I	CGTCTC	1 cut(s)	163
FaiI	YATR	6 cut(s)	185, 247, 249, 276, 428, 464
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FauI	CCCGC	1 cut(s)	229
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	5 cut(s)	27, 612, 639, 858, 912
FokI	GGATG	4 cut(s)	356, 485, 582, 1082
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	5 cut(s)	27, 612, 639, 858, 912
FspBI	CTAG	2 cut(s)	387, 711
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	5 cut(s)	27, 612, 639, 858, 912
GsuI	CTGGAG	1 cut(s)	374
HaeIII	GGCC	4 cut(s)	38, 134, 310, 442
HapII	CCGG	3 cut(s)	5, 14, 599
HgaI	GACGC	1 cut(s)	975
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	986
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HindIII	AAGCTT	1 cut(s)	846
HinfI	GANTC	5 cut(s)	92, 111, 200, 390, 961
HpaII	CCGG	3 cut(s)	5, 14, 599
HphI	GGTGA	2 cut(s)	158, 905
Hpy166II	GTNNAC	2 cut(s)	839, 866
Hpy188I	TCNGA	5 cut(s)	33, 230, 433, 534, 828
Hpy188III	TCNNGA	6 cut(s)	268, 353, 546, 599, 1067, 1092
Hpy8I	GTNNAC	2 cut(s)	839, 866
Hpy99I	CGWCG	2 cut(s)	92, 1055
HpyAV	CCTTC	4 cut(s)	225, 229, 321, 946
HpyCH4III	ACNGT	3 cut(s)	469, 790, 1034
HpyCH4V	TGCA	3 cut(s)	509, 638, 1150
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 83, 854
HpyF3I	CTNAG	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	986
HspAI	GCGC	1 cut(s)	120
Kpn2I	TCCGGA	1 cut(s)	598
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	3 cut(s)	406, 529, 1075
LmnI	GCTCC	4 cut(s)	7, 457, 601, 689
Lsp1109I	GCAGC	4 cut(s)	598, 650, 869, 923
LweI	GCATC	2 cut(s)	436, 1033
MaeI	CTAG	2 cut(s)	387, 711
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	3 cut(s)	408, 531, 1077
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	3 cut(s)	406, 529, 1075
MfeI	CAATTG	1 cut(s)	556
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	423, 444
MlyI	GAGTC	4 cut(s)	86, 120, 194, 399
MmeI	TCCRAC	2 cut(s)	434, 667
MroI	TCCGGA	1 cut(s)	598
MseI	TTAA	4 cut(s)	252, 513, 657, 833
MslI	CAYNNNNRTG	2 cut(s)	732, 1068
MspI	CCGG	3 cut(s)	5, 14, 599
MspR9I	CCNGG	1 cut(s)	747
MunI	CAATTG	1 cut(s)	556
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	747
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	35, 83, 854
NdeII	GATC	3 cut(s)	406, 529, 1075
NlaIV	GGNNCC	2 cut(s)	442, 459
NmuCI	GTSAC	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	134
PctI	GAATGC	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	961
PkrI	GCNGC	5 cut(s)	28, 613, 640, 859, 913
PleI	GAGTC	4 cut(s)	86, 119, 194, 398
PpsI	GAGTC	4 cut(s)	86, 119, 194, 398
PshAI	GACNNNNGTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	2 cut(s)	442, 459
PspOMI	GGGCCC	1 cut(s)	440
PspPI	GGNCC	4 cut(s)	36, 440, 441, 839
PsrI	GAACNNNNNNTAC	2 cut(s)	311, 343
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	3 cut(s)	576, 666, 816
RsaNI	GTAC	3 cut(s)	575, 665, 815
RseI	CAYNNNNRTG	2 cut(s)	732, 1068
SaqAI	TTAA	4 cut(s)	252, 513, 657, 833
SatI	GCNGC	5 cut(s)	27, 612, 639, 858, 912
Sau3AI	GATC	3 cut(s)	406, 529, 1075
Sau96I	GGNCC	4 cut(s)	36, 440, 441, 839
ScaI	AGTACT	1 cut(s)	576
SchI	GAGTC	4 cut(s)	86, 120, 194, 399
ScrFI	CCNGG	1 cut(s)	747
SduI	GDGCHC	2 cut(s)	423, 444
SfaNI	GCATC	2 cut(s)	436, 1033
SinI	GGWCC	1 cut(s)	839
SmiMI	CAYNNNNRTG	2 cut(s)	732, 1068
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	6 cut(s)	26, 162, 169, 236, 394, 842
SspMI	CTAG	2 cut(s)	387, 711
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	1 cut(s)	1119
TaaI	ACNGT	3 cut(s)	469, 790, 1034
TaqI	TCGA	6 cut(s)	105, 129, 198, 623, 947, 1004
TatI	WGTACW	1 cut(s)	574
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	961
Tru1I	TTAA	4 cut(s)	252, 513, 657, 833
Tru9I	TTAA	4 cut(s)	252, 513, 657, 833
TscAI	CASTG	5 cut(s)	56, 304, 373, 474, 1039
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	4 cut(s)	611, 638, 857, 911
Tsp45I	GTSAC	1 cut(s)	265
TspRI	CASTG	5 cut(s)	56, 304, 373, 474, 1039
VpaK11BI	GGWCC	1 cut(s)	839
XapI	RAATTY	1 cut(s)	591
XspI	CTAG	2 cut(s)	387, 711
ZrmI	AGTACT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.