RLG00000019425

Formamidopyrimidine-DNA glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005648
Physical Location & Seq
Forward (+)
51923219 .. 51926442
3224 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019425

Sequence Viewer

Length: 1197 bp
ATGCCAGAGCTACCGGAGGTGGAGGCGGCCCGCAGGGCCATAGAGGAAAACTGCGTCGGGAAGAAGATCACGAAAGCAATCGTTGCCGACGACTCCAAAGTCATCGACGGAGTCTCGCGCGCGGACTTCGAGGCCTCGCTTTTGGGGAAGACCATCGTCTCCGCGCACCGCAAGGGCAAGAACATGTGGCTCCAACTCGACTTTCCTCCTTTCCCTTCCTTCCAATTCGGGATGGCGGGTGCTGTGTATATTAAAGGGGTTGCGGTCACCAAGTACAAGAGGTCTGCTGTGAAGGACACTGATGAGTGGCCTTCCAAATATTCCAAGGTTTTTGTCCAACTGGATGATGGTCTGGAGTTCTCGTTCACTGACAAGAGGCGATTTGCAAGAGTCCGCCTGCTCGAAGATCCAACTTCTGTGCCCCCCATATCTGAGCTCGGGCCCGATGCTCTCTTGGAGCCAATGACGGTAGATGAACTTCTTGCATCATTAAGCAAGAAGAAAATATCAATTAAGGCTCTATTGCTTGATCAGAGCTTTATATCAGGAATTGGCAATTGGGTTGCTGATGAAGTACTATACCAAGCAAGAATTCATCCGGAGCAAAGTTCTGCCACCCTGTCCAAAGAATGTGTTGGAGCTTTACACAAAAGCATCAAAGAGGTCATTGAAAAATCAGTTGAAGTTGGAGCAGATAGTGATCGATATCCTAGTAATTGGATTTTTCATTCCCGTGAAAAGAAACCGGGAAAGGTGTTGGTTGATGGGAAGAAGATTAATTTTATCACAGTTGGTGGCAGGACTTCAGCTTTTGTACCAGAGCTTCAGAAGTTAACTGGAAATCAAGCTGCCAAAGCAGGAAGTAAACGAACTAATAAGAGTATTGATGATGTCAATGAAGAAGCAAGTGATGAAGAAGTCAAGGGAACTGCCAAATCTAAGAAAGGTAGGAAGCCTGGAGGTCAGGCCAAGAGGTCTACCGTGAAAAGAAAATCTAAAGACAGTGATGATGAAGACAATGACAATGATGATTCTGCTGATCATGTTGATCATGAAGACAGTGATGATGATGCTGATGAAGATCGAAAGAACAAAACAAGAAAGGTGACAACTAGTAAGCAATCCAAGGCAGAGATGACATCAAAGAAAAAGGTGCAGACCGGTCAAAATAGTAAACCAAAGAAGAGAGCGAAGTAG

Protein Analysis

399

Amino Acids

43.98

Weight (kDa)

9.06

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fapy_DNA_glyco PF01149 1 - 131 3e-28 Formamidopyrimidine-DNA glycosylase N-terminal domain
H2TH PF06831 146 - 233 1.1e-28 Formamidopyrimidine-DNA glycosylase H2TH domain
Fpg-like_C PF21218 240 - 273 9e-21 Formamidopyrimidine-DNA glycosylase-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AccI GTMKAC 1 cut(s) 977
AccII CGCG 4 cut(s) 118, 120, 122, 164
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 8 cut(s) 26, 31, 122, 162, 169, 236, 263, 394
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 1 cut(s) 591
AcuI CTGAAG 2 cut(s) 789, 809
AfaI GTAC 3 cut(s) 275, 576, 816
AflIII ACRYGT 1 cut(s) 183
AgeI ACCGGT 1 cut(s) 1160
AgsI TTSAA 2 cut(s) 671, 683
AhlI ACTAGT 1 cut(s) 1112
AjnI CCWGG 1 cut(s) 955
AjuI GAANNNNNNNTTGG 6 cut(s) 186, 218, 541, 573, 576, 608
AloI GAACNNNNNNTCC 2 cut(s) 347, 379
AluBI AGCT 7 cut(s) 10, 436, 537, 641, 809, 823, 848
AluI AGCT 7 cut(s) 10, 436, 537, 641, 809, 823, 848
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 2 cut(s) 118, 163
AlwI GGATC 1 cut(s) 401
Ama87I CYCGRG 1 cut(s) 437
Aor13HI TCCGGA 1 cut(s) 598
AoxI GGCC 6 cut(s) 27, 36, 132, 308, 440, 966
ApaI GGGCCC 1 cut(s) 444
ApeKI GCWGC 1 cut(s) 848
ApoI RAATTY 1 cut(s) 591
AseI ATTAAT 1 cut(s) 777
AsiGI ACCGGT 1 cut(s) 1160
AspLEI GCGC 3 cut(s) 120, 122, 166
AspS9I GGNCC 4 cut(s) 28, 36, 440, 441
AsuC2I CCSGG 1 cut(s) 747
AsuHPI GGTGA 2 cut(s) 259, 1117
AvaI CYCGRG 1 cut(s) 437
BaeGI GKGCMC 2 cut(s) 423, 444
BanII GRGCYC 2 cut(s) 438, 444
BarI GAAGNNNNNNTAC 4 cut(s) 462, 494, 807, 839
BbsI GAAGAC 3 cut(s) 155, 1020, 1062
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 835
BccI CCATC 4 cut(s) 161, 226, 341, 758
BciT130I CCWGG 1 cut(s) 957
BclI TGATCA 3 cut(s) 529, 1039, 1048
BcnI CCSGG 1 cut(s) 747
BcoDI GTCTC 2 cut(s) 118, 163
BcuI ACTAGT 1 cut(s) 1112
BfaI CTAG 2 cut(s) 711, 1113
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 2 cut(s) 27, 849
BlsI GCNGC 2 cut(s) 28, 850
BmcAI AGTACT 1 cut(s) 576
Bme1390I CCNGG 2 cut(s) 747, 957
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 4 cut(s) 28, 36, 440, 441
BmiI GGNNCC 3 cut(s) 191, 442, 459
BmrFI CCNGG 2 cut(s) 747, 957
BmsI GCATC 4 cut(s) 436, 494, 663, 1060
BoxI GACNNNNGTC 1 cut(s) 155
BpiI GAAGAC 3 cut(s) 155, 1020, 1062
BpmI CTGGAG 2 cut(s) 374, 978
BpuMI CCSGG 1 cut(s) 747
Bsa29I ATCGAT 1 cut(s) 703
BsaBI GATNNNNATC 3 cut(s) 699, 705, 1080
BsaJI CCNNGG 2 cut(s) 324, 1125
BsaWI WCCGGW 3 cut(s) 13, 598, 1160
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bse118I RCCGGY 1 cut(s) 1160
Bse1I ACTGG 2 cut(s) 345, 841
Bse8I GATNNNNATC 3 cut(s) 699, 705, 1080
BseAI TCCGGA 1 cut(s) 598
BseBI CCWGG 1 cut(s) 957
BseCI ATCGAT 1 cut(s) 703
BseDI CCNNGG 2 cut(s) 324, 1125
BseGI GGATG 3 cut(s) 237, 349, 595
BseJI GATNNNNATC 3 cut(s) 699, 705, 1080
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 2 cut(s) 345, 841
BsePI GCGCGC 1 cut(s) 118
BseSI GKGCMC 2 cut(s) 423, 444
BseXI GCAGC 1 cut(s) 835
BsgI GTGCAG 1 cut(s) 1175
Bsh1236I CGCG 4 cut(s) 118, 120, 122, 164
BshFI GGCC 6 cut(s) 29, 38, 134, 310, 442, 968
BshTI ACCGGT 1 cut(s) 1160
BshVI ATCGAT 1 cut(s) 703
BsiHKAI GWGCWC 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 4 cut(s) 14, 599, 746, 1161
BsmAI GTCTC 2 cut(s) 118, 163
BsmBI CGTCTC 1 cut(s) 163
BsnI GGCC 6 cut(s) 29, 38, 134, 310, 442, 968
BsoBI CYCGRG 1 cut(s) 437
Bsp120I GGGCCC 1 cut(s) 440
Bsp1286I GDGCHC 3 cut(s) 423, 438, 444
Bsp13I TCCGGA 1 cut(s) 598
Bsp143I GATC 7 cut(s) 66, 406, 529, 700, 1039, 1048, 1081
BspACI CCGC 8 cut(s) 26, 31, 122, 162, 169, 236, 263, 394
BspANI GGCC 6 cut(s) 29, 38, 134, 310, 442, 968
BspCNI CTCAG 1 cut(s) 424
BspDI ATCGAT 1 cut(s) 703
BspEI TCCGGA 1 cut(s) 598
BspFNI CGCG 4 cut(s) 118, 120, 122, 164
BspHI TCATGA 1 cut(s) 1051
BspLI GGNNCC 3 cut(s) 191, 442, 459
BspPI GGATC 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 1160
BsrI ACTGG 2 cut(s) 345, 841
BssAI RCCGGY 1 cut(s) 1160
BssECI CCNNGG 2 cut(s) 324, 1125
BssHII GCGCGC 1 cut(s) 118
BssMI GATC 7 cut(s) 66, 406, 529, 700, 1039, 1048, 1081
BssT1I CCWWGG 2 cut(s) 324, 1125
Bst2UI CCWGG 1 cut(s) 957
Bst4CI ACNGT 5 cut(s) 469, 790, 982, 1004, 1061
Bst6I CTCTTC 1 cut(s) 1178
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 31, 120, 398
BstDEI CTNAG 2 cut(s) 432, 939
BstEII GGTNACC 1 cut(s) 265
BstF5I GGATG 3 cut(s) 237, 349, 595
BstFNI CGCG 4 cut(s) 118, 120, 122, 164
BstHHI GCGC 3 cut(s) 120, 122, 166
BstKTI GATC 7 cut(s) 69, 409, 532, 703, 1042, 1051, 1084
BstMAI GTCTC 2 cut(s) 118, 163
BstMBI GATC 7 cut(s) 66, 406, 529, 700, 1039, 1048, 1081
BstMWI GCNNNNNNNGC 3 cut(s) 35, 83, 854
BstNI CCWGG 1 cut(s) 957
BstNSI RCATGY 1 cut(s) 187
BstPAI GACNNNNGTC 1 cut(s) 155
BstPI GGTNACC 1 cut(s) 265
BstSCI CCNGG 2 cut(s) 745, 955
BstSLI GKGCMC 2 cut(s) 423, 444
BstUI CGCG 4 cut(s) 118, 120, 122, 164
BstV1I GCAGC 1 cut(s) 835
BstV2I GAAGAC 3 cut(s) 155, 1020, 1062
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
Bsu15I ATCGAT 1 cut(s) 703
BsuRI GGCC 6 cut(s) 29, 38, 134, 310, 442, 968
BsuTUI ATCGAT 1 cut(s) 703
BtsCI GGATG 3 cut(s) 237, 349, 595
BtsIMutI CAGTG 4 cut(s) 297, 366, 1009, 1066
Cac8I GCNNGC 3 cut(s) 31, 120, 398
CciI TCATGA 1 cut(s) 1051
CfoI GCGC 3 cut(s) 120, 122, 166
Cfr10I RCCGGY 1 cut(s) 1160
Cfr13I GGNCC 4 cut(s) 28, 36, 440, 441
ClaI ATCGAT 1 cut(s) 703
CseI GACGC 1 cut(s) 43
Csp6I GTAC 3 cut(s) 274, 575, 815
CspAI ACCGGT 1 cut(s) 1160
CviAII CATG 3 cut(s) 184, 1043, 1052
CviQI GTAC 3 cut(s) 274, 575, 815
DdeI CTNAG 2 cut(s) 432, 939
DpnI GATC 7 cut(s) 68, 408, 531, 702, 1041, 1050, 1083
DpnII GATC 7 cut(s) 66, 406, 529, 700, 1039, 1048, 1081
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 1178
EarI CTCTTC 1 cut(s) 1178
EciI GGCGGA 1 cut(s) 383
Ecl136II GAGCTC 1 cut(s) 436
Eco130I CCWWGG 2 cut(s) 324, 1125
Eco147I AGGCCT 1 cut(s) 134
Eco24I GRGCYC 2 cut(s) 438, 444
Eco32I GATATC 1 cut(s) 707
Eco53kI GAGCTC 1 cut(s) 436
Eco57I CTGAAG 2 cut(s) 789, 809
Eco88I CYCGRG 1 cut(s) 437
Eco91I GGTNACC 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 436
EcoO65I GGTNACC 1 cut(s) 265
EcoRI GAATTC 1 cut(s) 591
EcoRII CCWGG 1 cut(s) 955
EcoRV GATATC 1 cut(s) 707
EcoT14I CCWWGG 2 cut(s) 324, 1125
EcoT38I GRGCYC 2 cut(s) 438, 444
ErhI CCWWGG 2 cut(s) 324, 1125
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 3 cut(s) 187, 1046, 1055
FaiI YATR 8 cut(s) 41, 185, 249, 428, 542, 580, 1044, 1053
FatI CATG 3 cut(s) 183, 1042, 1051
FauI CCCGC 2 cut(s) 38, 229
FbaI TGATCA 3 cut(s) 529, 1039, 1048
FblI GTMKAC 1 cut(s) 977
Fnu4HI GCNGC 2 cut(s) 27, 849
FokI GGATG 3 cut(s) 244, 356, 582
FriOI GRGCYC 2 cut(s) 438, 444
Fsp4HI GCNGC 2 cut(s) 27, 849
FspBI CTAG 2 cut(s) 711, 1113
GlaI GCGC 3 cut(s) 119, 121, 165
GluI GCNGC 2 cut(s) 27, 849
GsuI CTGGAG 2 cut(s) 374, 978
HaeIII GGCC 6 cut(s) 29, 38, 134, 310, 442, 968
HapII CCGG 4 cut(s) 14, 599, 746, 1161
HgaI GACGC 1 cut(s) 43
HhaI GCGC 3 cut(s) 120, 122, 166
Hin1II CATG 3 cut(s) 187, 1046, 1055
Hin6I GCGC 3 cut(s) 118, 120, 164
HinP1I GCGC 3 cut(s) 118, 120, 164
HincII GTYRAC 1 cut(s) 834
HindII GTYRAC 1 cut(s) 834
HinfI GANTC 4 cut(s) 92, 111, 390, 1031
HpaI GTTAAC 1 cut(s) 834
HpaII CCGG 4 cut(s) 14, 599, 746, 1161
HphI GGTGA 2 cut(s) 259, 1117
Hpy166II GTNNAC 5 cut(s) 366, 834, 866, 978, 1175
Hpy188I TCNGA 3 cut(s) 433, 534, 828
Hpy188III TCNNGA 7 cut(s) 58, 70, 229, 353, 546, 599, 1052
Hpy8I GTNNAC 5 cut(s) 366, 834, 866, 978, 1175
Hpy99I CGWCG 3 cut(s) 59, 92, 110
HpyAV CCTTC 4 cut(s) 225, 229, 286, 321
HpyCH4III ACNGT 5 cut(s) 469, 790, 982, 1004, 1061
HpyCH4V TGCA 3 cut(s) 386, 485, 1156
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 83, 854
HpyF3I CTNAG 2 cut(s) 432, 939
Hsp92II CATG 3 cut(s) 187, 1046, 1055
HspAI GCGC 3 cut(s) 118, 120, 164
Kpn2I TCCGGA 1 cut(s) 598
Ksp22I TGATCA 3 cut(s) 529, 1039, 1048
KspAI GTTAAC 1 cut(s) 834
Kzo9I GATC 7 cut(s) 66, 406, 529, 700, 1039, 1048, 1081
LmnI GCTCC 5 cut(s) 195, 457, 601, 638, 689
Lsp1109I GCAGC 1 cut(s) 835
LweI GCATC 4 cut(s) 436, 494, 663, 1060
MaeI CTAG 2 cut(s) 711, 1113
MaeIII GTNAC 2 cut(s) 265, 1105
MalI GATC 7 cut(s) 68, 408, 531, 702, 1041, 1050, 1083
MauBI CGCGCGCG 1 cut(s) 118
MboI GATC 7 cut(s) 66, 406, 529, 700, 1039, 1048, 1081
MfeI CAATTG 1 cut(s) 556
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 3 cut(s) 423, 438, 444
MluCI AATT 7 cut(s) 224, 510, 549, 556, 591, 715, 778
MlyI GAGTC 3 cut(s) 86, 120, 399
MmeI TCCRAC 5 cut(s) 217, 361, 434, 616, 667
MroI TCCGGA 1 cut(s) 598
MseI TTAA 5 cut(s) 252, 491, 513, 777, 833
MslI CAYNNNNRTG 1 cut(s) 732
MspI CCGG 4 cut(s) 14, 599, 746, 1161
MspR9I CCNGG 2 cut(s) 747, 957
MunI CAATTG 1 cut(s) 556
MvaI CCWGG 1 cut(s) 957
MvnI CGCG 4 cut(s) 118, 120, 122, 164
MwoI GCNNNNNNNGC 3 cut(s) 35, 83, 854
NciI CCSGG 1 cut(s) 747
NdeII GATC 7 cut(s) 66, 406, 529, 700, 1039, 1048, 1081
NlaIII CATG 3 cut(s) 187, 1046, 1055
NlaIV GGNNCC 3 cut(s) 191, 442, 459
NmuCI GTSAC 2 cut(s) 265, 1105
NspI RCATGY 1 cut(s) 187
PagI TCATGA 1 cut(s) 1051
PauI GCGCGC 1 cut(s) 118
PceI AGGCCT 1 cut(s) 134
PciI ACATGT 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 1031
PflFI GACNNNGTC 1 cut(s) 110
PinAI ACCGGT 1 cut(s) 1160
PkrI GCNGC 2 cut(s) 28, 850
PleI GAGTC 3 cut(s) 86, 119, 398
PpsI GAGTC 3 cut(s) 86, 119, 398
PscI ACATGT 1 cut(s) 183
PshAI GACNNNNGTC 1 cut(s) 155
PshBI ATTAAT 1 cut(s) 777
Psp124BI GAGCTC 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 955
PspEI GGTNACC 1 cut(s) 265
PspGI CCWGG 1 cut(s) 955
PspN4I GGNNCC 3 cut(s) 191, 442, 459
PspOMI GGGCCC 1 cut(s) 440
PspPI GGNCC 4 cut(s) 28, 36, 440, 441
PsuI RGATCY 1 cut(s) 406
PsyI GACNNNGTC 1 cut(s) 110
PteI GCGCGC 1 cut(s) 118
RsaI GTAC 3 cut(s) 275, 576, 816
RsaNI GTAC 3 cut(s) 274, 575, 815
RseI CAYNNNNRTG 1 cut(s) 732
SacI GAGCTC 1 cut(s) 438
SaqAI TTAA 5 cut(s) 252, 491, 513, 777, 833
SatI GCNGC 2 cut(s) 27, 849
Sau3AI GATC 7 cut(s) 66, 406, 529, 700, 1039, 1048, 1081
Sau96I GGNCC 4 cut(s) 28, 36, 440, 441
ScaI AGTACT 1 cut(s) 576
SchI GAGTC 3 cut(s) 86, 120, 399
ScrFI CCNGG 2 cut(s) 747, 957
SduI GDGCHC 3 cut(s) 423, 438, 444
SfaNI GCATC 4 cut(s) 436, 494, 663, 1060
SfiI GGCCNNNNNGGCC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 732
SpeI ACTAGT 1 cut(s) 1112
Sse9I AATT 7 cut(s) 224, 510, 549, 556, 591, 715, 778
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 8 cut(s) 26, 31, 122, 162, 169, 236, 263, 394
SspI AATATT 1 cut(s) 320
SspMI CTAG 2 cut(s) 711, 1113
SstI GAGCTC 1 cut(s) 438
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 745, 955
StyI CCWWGG 2 cut(s) 324, 1125
TaaI ACNGT 5 cut(s) 469, 790, 982, 1004, 1061
TaqI TCGA 6 cut(s) 105, 129, 198, 402, 703, 1084
TasI AATT 7 cut(s) 224, 510, 549, 556, 591, 715, 778
TatI WGTACW 2 cut(s) 273, 574
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 1031
Tru1I TTAA 5 cut(s) 252, 491, 513, 777, 833
Tru9I TTAA 5 cut(s) 252, 491, 513, 777, 833
TscAI CASTG 4 cut(s) 304, 373, 1009, 1066
TseFI GTSAC 2 cut(s) 265, 1105
TseI GCWGC 1 cut(s) 848
Tsp45I GTSAC 2 cut(s) 265, 1105
TspDTI ATGAA 9 cut(s) 489, 584, 585, 716, 912, 927, 1026, 1068, 1092
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 4 cut(s) 304, 373, 1009, 1066
Tth111I GACNNNGTC 1 cut(s) 110
VspI ATTAAT 1 cut(s) 777
XapI RAATTY 1 cut(s) 591
XceI RCATGY 1 cut(s) 187
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 977
XspI CTAG 2 cut(s) 711, 1113
ZrmI AGTACT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.