Rmu_sc0004406.1_g000012

Formamidopyrimidine-DNA glycosylase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004406.1
Physical Location & Seq
Forward (+)
31782 .. 35428
3647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004406.1_g000012.1.cds

Sequence Viewer

Length: 1194 bp
atgccagagctaccggaggtggaggcggcccggagggccatagaggaaaactgcgtcgggaagaagatcacgaaagcaatcgtcgctgacgactccaaagtcatcgacggagtctcgcgcgcggacttcgaggcctcgctcttggggaagaccatcgtcgccgcccaccgcaagggcaagaacatgtggctccaactcgactctcctcctttcccttccttccaattcgggatggcgggtgctgtgtatattaaaggggttgcggtcaccaagtacaagaggtctgctgtgaaggacactgatgagtggccttccaaatattccaaggtttttgtccaactggatgatggtctggagttctcgttcactgacaagaggcgatttgcaagagtccgcctacttgaagatccaacttctgtggcgcccatatctgagctcgggcccgatgctctcttggagccaatgacagtagatgaacttcttgcatcattaagcaagaagaaaatatcaattaaggctctattgcttgatcagagctttatatcaggaattggcaattgggttgctgatgaagtactataccaagcaagaattcatccggagcaaagttctgccaccctgtccaaagaatgtgttggagccttacacaaaagcatcaaagaggttattgaatatgcagtccaagttgatgctgcatctactcacttcccctgtgaatggttgtttcattttcgttggggcaaaaggcctggaaaaattaatgggaagaagattaattttatcacagttggtggcaggacttcagcttttgtaccagagcttcagaagttaactggaaatcaagctgccaaagcaggaagtaaacgaactaataagagtattgatgatgtcaatgaagaagcaagtgatgaagaagtcaagggaactgccaaatctaagaaaggtaggaagcctggaggtcaggccaagaggtctgccgtgaaaagaaaatctaaagacagtgatgatgaagacaatgacaatgatgattctgctgatgatgtcgatcatgaagacagtgatgatgatgctgatgaagatcgaaggaacaaaacaagaaaggtgacaaccagtaagcaatccaaggcagggacgacatcaaagaaaaaggtgcagaccggtcaaaatagtaaaccaaagaagagagcgaagtag

Protein Analysis

397

Amino Acids

43.77

Weight (kDa)

9.12

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AccB1I GGYRCC 1 cut(s) 421
AccII CGCG 3 cut(s) 118, 120, 122
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 7 cut(s) 26, 122, 162, 169, 236, 263, 394
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 1 cut(s) 591
AcuI CTGAAG 2 cut(s) 786, 806
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 3 cut(s) 275, 576, 813
AfiI CCNNNNNNNGG 3 cut(s) 172, 717, 1128
AflIII ACRYGT 1 cut(s) 183
AgeI ACCGGT 1 cut(s) 1157
AgsI TTSAA 2 cut(s) 404, 671
AjnI CCWGG 2 cut(s) 748, 952
AjuI GAANNNNNNNTTGG 4 cut(s) 541, 573, 576, 608
AloI GAACNNNNNNTCC 2 cut(s) 347, 379
AluBI AGCT 6 cut(s) 10, 436, 537, 806, 820, 845
AluI AGCT 6 cut(s) 10, 436, 537, 806, 820, 845
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 1 cut(s) 401
Ama87I CYCGRG 1 cut(s) 437
Aor13HI TCCGGA 1 cut(s) 598
AoxI GGCC 7 cut(s) 27, 36, 132, 308, 440, 746, 963
ApaI GGGCCC 1 cut(s) 444
ApeKI GCWGC 2 cut(s) 692, 845
ApoI RAATTY 1 cut(s) 591
AseI ATTAAT 2 cut(s) 759, 774
AsiGI ACCGGT 1 cut(s) 1157
AspLEI GCGC 3 cut(s) 120, 122, 424
AspS9I GGNCC 4 cut(s) 28, 36, 440, 441
AsuC2I CCSGG 1 cut(s) 31
AsuHPI GGTGA 2 cut(s) 259, 1114
AvaI CYCGRG 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 444
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 2 cut(s) 438, 444
BarI GAAGNNNNNNTAC 4 cut(s) 462, 494, 804, 836
BbsI GAAGAC 3 cut(s) 155, 1017, 1059
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 2 cut(s) 679, 832
BccI CCATC 3 cut(s) 161, 226, 341
BceAI ACGGC 1 cut(s) 962
BciT130I CCWGG 2 cut(s) 750, 954
BclI TGATCA 1 cut(s) 529
BcnI CCSGG 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 118
BfoI RGCGCY 1 cut(s) 425
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 4 cut(s) 27, 162, 693, 846
BlsI GCNGC 4 cut(s) 28, 163, 694, 847
BmcAI AGTACT 1 cut(s) 576
Bme1390I CCNGG 3 cut(s) 31, 750, 954
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 4 cut(s) 28, 36, 440, 441
BmiI GGNNCC 5 cut(s) 191, 423, 442, 459, 640
BmrFI CCNGG 3 cut(s) 31, 750, 954
BmsI GCATC 6 cut(s) 436, 494, 663, 679, 704, 1057
BoxI GACNNNNGTC 1 cut(s) 155
BpiI GAAGAC 3 cut(s) 155, 1017, 1059
BpmI CTGGAG 2 cut(s) 374, 975
BpuMI CCSGG 1 cut(s) 31
BsaBI GATNNNNATC 2 cut(s) 1044, 1077
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 324, 1122
BsaWI WCCGGW 3 cut(s) 13, 598, 1157
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 717, 1128
Bse118I RCCGGY 1 cut(s) 1157
Bse1I ACTGG 3 cut(s) 345, 838, 1110
Bse8I GATNNNNATC 2 cut(s) 1044, 1077
BseAI TCCGGA 1 cut(s) 598
BseBI CCWGG 2 cut(s) 750, 954
BseDI CCNNGG 2 cut(s) 324, 1122
BseGI GGATG 3 cut(s) 237, 349, 595
BseJI GATNNNNATC 2 cut(s) 1044, 1077
BseLI CCNNNNNNNGG 3 cut(s) 172, 717, 1128
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 3 cut(s) 345, 838, 1110
BsePI GCGCGC 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 2 cut(s) 679, 832
BsgI GTGCAG 1 cut(s) 1172
Bsh1236I CGCG 3 cut(s) 118, 120, 122
BshFI GGCC 7 cut(s) 29, 38, 134, 310, 442, 748, 965
BshNI GGYRCC 1 cut(s) 421
BshTI ACCGGT 1 cut(s) 1157
BsiHKAI GWGCWC 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 4 cut(s) 14, 31, 599, 1158
BslFI GGGAC 1 cut(s) 1144
BslI CCNNNNNNNGG 3 cut(s) 172, 717, 1128
BsmAI GTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 1144
BsnI GGCC 7 cut(s) 29, 38, 134, 310, 442, 748, 965
BsoBI CYCGRG 1 cut(s) 437
Bsp120I GGGCCC 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 438, 444
Bsp13I TCCGGA 1 cut(s) 598
Bsp143I GATC 5 cut(s) 66, 406, 529, 1045, 1078
BspACI CCGC 7 cut(s) 26, 122, 162, 169, 236, 263, 394
BspANI GGCC 7 cut(s) 29, 38, 134, 310, 442, 748, 965
BspCNI CTCAG 1 cut(s) 424
BspEI TCCGGA 1 cut(s) 598
BspFNI CGCG 3 cut(s) 118, 120, 122
BspHI TCATGA 1 cut(s) 1048
BspLI GGNNCC 5 cut(s) 191, 423, 442, 459, 640
BspPI GGATC 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 1157
BsrI ACTGG 3 cut(s) 345, 838, 1110
BssAI RCCGGY 1 cut(s) 1157
BssECI CCNNGG 2 cut(s) 324, 1122
BssHII GCGCGC 1 cut(s) 118
BssMI GATC 5 cut(s) 66, 406, 529, 1045, 1078
BssNI GRCGYC 1 cut(s) 422
BssT1I CCWWGG 2 cut(s) 324, 1122
Bst2UI CCWGG 2 cut(s) 750, 954
Bst4CI ACNGT 4 cut(s) 469, 787, 1001, 1058
Bst6I CTCTTC 1 cut(s) 1175
BstACI GRCGYC 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 432, 936
BstEII GGTNACC 1 cut(s) 265
BstF5I GGATG 3 cut(s) 237, 349, 595
BstFNI CGCG 3 cut(s) 118, 120, 122
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 3 cut(s) 120, 122, 424
BstKTI GATC 5 cut(s) 69, 409, 532, 1048, 1081
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 5 cut(s) 66, 406, 529, 1045, 1078
BstMWI GCNNNNNNNGC 3 cut(s) 35, 83, 851
BstNI CCWGG 2 cut(s) 750, 954
BstNSI RCATGY 1 cut(s) 187
BstPAI GACNNNNGTC 1 cut(s) 155
BstPI GGTNACC 1 cut(s) 265
BstSCI CCNGG 3 cut(s) 29, 748, 952
BstSLI GKGCMC 1 cut(s) 444
BstUI CGCG 3 cut(s) 118, 120, 122
BstV1I GCAGC 2 cut(s) 679, 832
BstV2I GAAGAC 3 cut(s) 155, 1017, 1059
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 7 cut(s) 29, 38, 134, 310, 442, 748, 965
BtsCI GGATG 3 cut(s) 237, 349, 595
BtsIMutI CAGTG 4 cut(s) 297, 366, 1006, 1063
Cac8I GCNNGC 1 cut(s) 120
CciI TCATGA 1 cut(s) 1048
CfoI GCGC 3 cut(s) 120, 122, 424
Cfr10I RCCGGY 1 cut(s) 1157
Cfr13I GGNCC 4 cut(s) 28, 36, 440, 441
CseI GACGC 1 cut(s) 43
Csp6I GTAC 3 cut(s) 274, 575, 812
CspAI ACCGGT 1 cut(s) 1157
CspCI CAANNNNNGTGG 2 cut(s) 399, 434
CviAII CATG 2 cut(s) 184, 1049
CviQI GTAC 3 cut(s) 274, 575, 812
DdeI CTNAG 2 cut(s) 432, 936
DinI GGCGCC 1 cut(s) 423
DpnI GATC 5 cut(s) 68, 408, 531, 1047, 1080
DpnII GATC 5 cut(s) 66, 406, 529, 1045, 1078
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 1175
EarI CTCTTC 1 cut(s) 1175
EciI GGCGGA 1 cut(s) 383
Ecl136II GAGCTC 1 cut(s) 436
Eco130I CCWWGG 2 cut(s) 324, 1122
Eco147I AGGCCT 2 cut(s) 134, 748
Eco24I GRGCYC 2 cut(s) 438, 444
Eco53kI GAGCTC 1 cut(s) 436
Eco57I CTGAAG 2 cut(s) 786, 806
Eco88I CYCGRG 1 cut(s) 437
Eco91I GGTNACC 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 436
EcoO65I GGTNACC 1 cut(s) 265
EcoRI GAATTC 1 cut(s) 591
EcoRII CCWGG 2 cut(s) 748, 952
EcoT14I CCWWGG 2 cut(s) 324, 1122
EcoT38I GRGCYC 2 cut(s) 438, 444
EgeI GGCGCC 1 cut(s) 423
EheI GGCGCC 1 cut(s) 423
ErhI CCWWGG 2 cut(s) 324, 1122
FaeI CATG 2 cut(s) 187, 1052
FaiI YATR 8 cut(s) 41, 185, 249, 428, 542, 580, 675, 1050
FaqI GGGAC 1 cut(s) 1144
FatI CATG 2 cut(s) 183, 1048
FauI CCCGC 1 cut(s) 229
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 4 cut(s) 27, 162, 693, 846
FokI GGATG 3 cut(s) 244, 356, 582
FriOI GRGCYC 2 cut(s) 438, 444
Fsp4HI GCNGC 4 cut(s) 27, 162, 693, 846
GlaI GCGC 3 cut(s) 119, 121, 423
GluI GCNGC 4 cut(s) 27, 162, 693, 846
GsuI CTGGAG 2 cut(s) 374, 975
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 7 cut(s) 29, 38, 134, 310, 442, 748, 965
HapII CCGG 4 cut(s) 14, 31, 599, 1158
HgaI GACGC 1 cut(s) 43
HhaI GCGC 3 cut(s) 120, 122, 424
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 2 cut(s) 187, 1052
Hin6I GCGC 3 cut(s) 118, 120, 422
HinP1I GCGC 3 cut(s) 118, 120, 422
HincII GTYRAC 1 cut(s) 831
HindII GTYRAC 1 cut(s) 831
HinfI GANTC 5 cut(s) 92, 111, 200, 390, 1028
HpaI GTTAAC 1 cut(s) 831
HpaII CCGG 4 cut(s) 14, 31, 599, 1158
HphI GGTGA 2 cut(s) 259, 1114
Hpy166II GTNNAC 4 cut(s) 366, 831, 863, 1172
Hpy188I TCNGA 3 cut(s) 433, 534, 825
Hpy188III TCNNGA 7 cut(s) 58, 70, 229, 353, 546, 599, 1049
Hpy8I GTNNAC 4 cut(s) 366, 831, 863, 1172
Hpy99I CGWCG 4 cut(s) 59, 86, 110, 161
HpyAV CCTTC 5 cut(s) 225, 229, 286, 321, 1077
HpyCH4III ACNGT 4 cut(s) 469, 787, 1001, 1058
HpyCH4V TGCA 5 cut(s) 386, 485, 677, 695, 1153
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 83, 851
HpyF3I CTNAG 2 cut(s) 432, 936
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 2 cut(s) 187, 1052
HspAI GCGC 3 cut(s) 118, 120, 422
KasI GGCGCC 1 cut(s) 421
Kpn2I TCCGGA 1 cut(s) 598
Ksp22I TGATCA 1 cut(s) 529
KspAI GTTAAC 1 cut(s) 831
Kzo9I GATC 5 cut(s) 66, 406, 529, 1045, 1078
LmnI GCTCC 4 cut(s) 195, 457, 601, 638
Lsp1109I GCAGC 2 cut(s) 679, 832
LweI GCATC 6 cut(s) 436, 494, 663, 679, 704, 1057
MaeIII GTNAC 2 cut(s) 265, 1102
MalI GATC 5 cut(s) 68, 408, 531, 1047, 1080
MauBI CGCGCGCG 1 cut(s) 118
MboI GATC 5 cut(s) 66, 406, 529, 1045, 1078
MfeI CAATTG 1 cut(s) 556
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 2 cut(s) 438, 444
MluCI AATT 7 cut(s) 224, 510, 549, 556, 591, 756, 775
Mly113I GGCGCC 1 cut(s) 422
MlyI GAGTC 4 cut(s) 86, 120, 194, 399
MmeI TCCRAC 4 cut(s) 217, 361, 434, 616
MroI TCCGGA 1 cut(s) 598
MseI TTAA 6 cut(s) 252, 491, 513, 759, 774, 830
MspI CCGG 4 cut(s) 14, 31, 599, 1158
MspR9I CCNGG 3 cut(s) 31, 750, 954
MunI CAATTG 1 cut(s) 556
MvaI CCWGG 2 cut(s) 750, 954
MvnI CGCG 3 cut(s) 118, 120, 122
MwoI GCNNNNNNNGC 3 cut(s) 35, 83, 851
NarI GGCGCC 1 cut(s) 422
NciI CCSGG 1 cut(s) 31
NdeII GATC 5 cut(s) 66, 406, 529, 1045, 1078
NlaIII CATG 2 cut(s) 187, 1052
NlaIV GGNNCC 5 cut(s) 191, 423, 442, 459, 640
NmuCI GTSAC 2 cut(s) 265, 1102
NspI RCATGY 1 cut(s) 187
PagI TCATGA 1 cut(s) 1048
PauI GCGCGC 1 cut(s) 118
PceI AGGCCT 2 cut(s) 134, 748
PciI ACATGT 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 1028
PflFI GACNNNGTC 1 cut(s) 110
PinAI ACCGGT 1 cut(s) 1157
PkrI GCNGC 4 cut(s) 28, 163, 694, 847
PleI GAGTC 4 cut(s) 86, 119, 194, 398
PluTI GGCGCC 1 cut(s) 425
PpsI GAGTC 4 cut(s) 86, 119, 194, 398
PscI ACATGT 1 cut(s) 183
PshAI GACNNNNGTC 1 cut(s) 155
PshBI ATTAAT 2 cut(s) 759, 774
Psp124BI GAGCTC 1 cut(s) 438
Psp6I CCWGG 2 cut(s) 748, 952
PspEI GGTNACC 1 cut(s) 265
PspGI CCWGG 2 cut(s) 748, 952
PspN4I GGNNCC 5 cut(s) 191, 423, 442, 459, 640
PspOMI GGGCCC 1 cut(s) 440
PspPI GGNCC 4 cut(s) 28, 36, 440, 441
PsuI RGATCY 1 cut(s) 406
PsyI GACNNNGTC 1 cut(s) 110
PteI GCGCGC 1 cut(s) 118
RsaI GTAC 3 cut(s) 275, 576, 813
RsaNI GTAC 3 cut(s) 274, 575, 812
SacI GAGCTC 1 cut(s) 438
SaqAI TTAA 6 cut(s) 252, 491, 513, 759, 774, 830
SatI GCNGC 4 cut(s) 27, 162, 693, 846
Sau3AI GATC 5 cut(s) 66, 406, 529, 1045, 1078
Sau96I GGNCC 4 cut(s) 28, 36, 440, 441
ScaI AGTACT 1 cut(s) 576
SchI GAGTC 4 cut(s) 86, 120, 194, 399
ScrFI CCNGG 3 cut(s) 31, 750, 954
SduI GDGCHC 2 cut(s) 438, 444
SfaNI GCATC 6 cut(s) 436, 494, 663, 679, 704, 1057
SfiI GGCCNNNNNGGCC 1 cut(s) 35
SfoI GGCGCC 1 cut(s) 423
Sse9I AATT 7 cut(s) 224, 510, 549, 556, 591, 756, 775
SseBI AGGCCT 2 cut(s) 134, 748
SsiI CCGC 7 cut(s) 26, 122, 162, 169, 236, 263, 394
SspDI GGCGCC 1 cut(s) 421
SspI AATATT 1 cut(s) 320
SstI GAGCTC 1 cut(s) 438
StuI AGGCCT 2 cut(s) 134, 748
StyD4I CCNGG 3 cut(s) 29, 748, 952
StyI CCWWGG 2 cut(s) 324, 1122
TaaI ACNGT 4 cut(s) 469, 787, 1001, 1058
TaqI TCGA 5 cut(s) 105, 129, 198, 1044, 1081
TasI AATT 7 cut(s) 224, 510, 549, 556, 591, 756, 775
TatI WGTACW 2 cut(s) 273, 574
TauI GCSGC 2 cut(s) 29, 164
TfiI GAWTC 1 cut(s) 1028
Tru1I TTAA 6 cut(s) 252, 491, 513, 759, 774, 830
Tru9I TTAA 6 cut(s) 252, 491, 513, 759, 774, 830
TscAI CASTG 4 cut(s) 304, 373, 1006, 1063
TseFI GTSAC 2 cut(s) 265, 1102
TseI GCWGC 2 cut(s) 692, 845
Tsp45I GTSAC 2 cut(s) 265, 1102
TspDTI ATGAA 9 cut(s) 489, 584, 585, 716, 909, 924, 1023, 1065, 1089
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 4 cut(s) 304, 373, 1006, 1063
Tth111I GACNNNGTC 1 cut(s) 110
VspI ATTAAT 2 cut(s) 759, 774
XapI RAATTY 1 cut(s) 591
XceI RCATGY 1 cut(s) 187
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
ZrmI AGTACT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.