Rorug02G0320500

Formamidopyrimidine-DNA glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005648
Physical Location & Seq
Forward (+)
39223199 .. 39225994
2796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0320500.1

Sequence Viewer

Length: 924 bp
ATGATTGAAGAGATGTTCCAAGAGATCGTAATAGGAAACAAAGAATTATATTTTTCTTCCAAAAGGTCGACCAACGCCGTCACAACGCCACGCAACAACGCCGTCACAACAGCCACGCTCACCAGCCACGAGGGCATAACGGTCATTTCGGCGGCGGAGGCTCCACCTCAGGCCCCTCTCGTCGGCGGAGGCTCCAACCGCAACGCCTACAGAACGGCGCCGTATCCCACTCTGCCGGAAATGCAAGGACAGCCTGGACCCAGAAGGATTGAGCTGCCATTGGCTTTGAGCCAAGCGATGAACAGTGAGGGAAGCACCAAGCTTTATATATCTAACTTGGACTATGATGTTACCAATCGAGATATAGAGTTGCTCTTCTCTGAGGTTGGTGAATTGGAAAGGCACTCAATCCATTATGATAAAAGTGGAAGATCTAAGAAGGTTTGCGTTGCTTCTGTTCAAGGAACAGCTGAAGTTGTCTATAAGCACTATTCAGATGCTCTAGCAGCAATCGAGAGATACAACAATCAGCATCTTGATGGAAAGAAAGTGGAAATTAAGCTTGTGGGACTCAATGTTGTTTCTCCTGTTCCTCTGCTTCTGCCTCCAAATACAAATTTCATGCAAGAACATCCAACTCCCGTCTTCCAGAGGCTAGGAAGAGCTGGTTCAAGGGGATCGTTTCATGGTCATGGTGGTGTTGGACTTGAAAGAGGCTGTGGACAGGTGAGAAATGGTGGTCCGAAGGTTACTACAGAATCTCAGCAATGGAAGAATGTGACTGCAGAAAATCAGCAAAGGAAGAATGTGATTACAGAATCTGTTAAAAGGAAGAAAACATTTTATGGAGATACAACTGTGACTTTTGATGATCTGGATGCTGATTTGGAAAAATACCGCCTAAAATGTAGGCCGGTAAACTGA

Protein Analysis

307

Amino Acids

33.91

Weight (kDa)

8.82

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 108 - 184 7.3e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 217
AccI GTMKAC 1 cut(s) 68
AciI CCGC 5 cut(s) 152, 155, 186, 199, 898
AclWI GGATC 1 cut(s) 685
AcsI RAATTY 1 cut(s) 616
AcuI CTGAAG 1 cut(s) 492
AcyI GRCGYC 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 182
AgsI TTSAA 4 cut(s) 8, 461, 672, 710
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 5 cut(s) 274, 322, 470, 562, 665
AluI AGCT 5 cut(s) 274, 322, 470, 562, 665
AlwI GGATC 1 cut(s) 685
AlwNI CAGNNNCTG 1 cut(s) 821
AoxI GGCC 2 cut(s) 171, 911
ApeKI GCWGC 2 cut(s) 274, 506
ApoI RAATTY 1 cut(s) 616
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 3 cut(s) 172, 257, 740
AsuHPI GGTGA 3 cut(s) 112, 401, 739
AvaII GGWCC 2 cut(s) 257, 740
AxyI CCTNAGG 1 cut(s) 168
BaeI ACNNNNGTAYC 2 cut(s) 843, 876
BanI GGYRCC 1 cut(s) 217
BauI CACGAG 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 637
BbvI GCAGC 2 cut(s) 261, 518
BccI CCATC 1 cut(s) 533
BceAI ACGGC 4 cut(s) 62, 86, 205, 231
BciT130I CCWGG 1 cut(s) 255
BciVI GTATCC 1 cut(s) 234
BfaI CTAG 2 cut(s) 503, 656
BfmI CTRYAG 3 cut(s) 208, 753, 783
BfoI RGCGCY 1 cut(s) 221
BfuI GTATCC 1 cut(s) 234
BglI GCCNNNNNGGC 1 cut(s) 132
BglII AGATCT 1 cut(s) 431
BisI GCNGC 3 cut(s) 153, 275, 507
BlsI GCNGC 3 cut(s) 154, 276, 508
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 2 cut(s) 257, 740
BmgT120I GGNCC 3 cut(s) 172, 257, 740
BmiI GGNNCC 5 cut(s) 162, 174, 193, 219, 259
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 3 cut(s) 487, 541, 868
BpiI GAAGAC 1 cut(s) 637
BsaHI GRCGYC 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse118I RCCGGY 1 cut(s) 913
Bse21I CCTNAGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 773
BseBI CCWGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 631, 883
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMI GCAATG 1 cut(s) 773
BseMII CTCAG 3 cut(s) 182, 372, 776
BseXI GCAGC 2 cut(s) 261, 518
BshFI GGCC 2 cut(s) 173, 913
BshNI GGYRCC 1 cut(s) 217
BsiSI CCGG 2 cut(s) 236, 914
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 582
BsnI GGCC 2 cut(s) 173, 913
Bsp143I GATC 4 cut(s) 24, 431, 677, 871
BspACI CCGC 5 cut(s) 152, 155, 186, 199, 898
BspANI GGCC 2 cut(s) 173, 913
BspCNI CTCAG 3 cut(s) 181, 373, 775
BspLI GGNNCC 5 cut(s) 162, 174, 193, 219, 259
BspMAI CTGCAG 1 cut(s) 787
BspPI GGATC 1 cut(s) 685
BspQI GCTCTTC 2 cut(s) 380, 655
BspT107I GGYRCC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 773
BsrFI RCCGGY 1 cut(s) 913
BssAI RCCGGY 1 cut(s) 913
BssMI GATC 4 cut(s) 24, 431, 677, 871
BssNI GRCGYC 1 cut(s) 218
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 3 cut(s) 142, 305, 859
Bst6I CTCTTC 3 cut(s) 3, 380, 655
BstACI GRCGYC 1 cut(s) 218
BstDEI CTNAG 4 cut(s) 168, 381, 435, 762
BstF5I GGATG 2 cut(s) 631, 883
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 4 cut(s) 27, 434, 680, 874
BstMBI GATC 4 cut(s) 24, 431, 677, 871
BstMWI GCNNNNNNNGC 6 cut(s) 132, 158, 198, 241, 250, 506
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 3 cut(s) 208, 753, 783
BstV1I GCAGC 2 cut(s) 261, 518
BstV2I GAAGAC 1 cut(s) 637
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
Bsu36I CCTNAGG 1 cut(s) 168
BsuI GTATCC 1 cut(s) 234
BsuRI GGCC 2 cut(s) 173, 913
BtgZI GCGATG 1 cut(s) 311
BtsCI GGATG 2 cut(s) 631, 883
BtsIMutI CAGTG 1 cut(s) 310
CaiI CAGNNNCTG 1 cut(s) 821
CfoI GCGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 913
Cfr13I GGNCC 3 cut(s) 172, 257, 740
CviAII CATG 3 cut(s) 622, 686, 692
DdeI CTNAG 4 cut(s) 168, 381, 435, 762
DinI GGCGCC 1 cut(s) 219
DpnI GATC 4 cut(s) 26, 433, 679, 873
DpnII GATC 4 cut(s) 24, 431, 677, 871
Eam1104I CTCTTC 3 cut(s) 3, 380, 655
EarI CTCTTC 3 cut(s) 3, 380, 655
EciI GGCGGA 2 cut(s) 170, 201
Eco47I GGWCC 2 cut(s) 257, 740
Eco57I CTGAAG 1 cut(s) 492
Eco81I CCTNAGG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 253
EgeI GGCGCC 1 cut(s) 219
EheI GGCGCC 1 cut(s) 219
FaeI CATG 3 cut(s) 625, 689, 695
FaqI GGGAC 1 cut(s) 582
FatI CATG 3 cut(s) 621, 685, 691
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 153, 275, 507
FokI GGATG 2 cut(s) 618, 890
Fsp4HI GCNGC 3 cut(s) 153, 275, 507
FspBI CTAG 2 cut(s) 503, 656
GlaI GCGC 1 cut(s) 219
GluI GCNGC 3 cut(s) 153, 275, 507
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 2 cut(s) 173, 913
HapII CCGG 2 cut(s) 236, 914
HhaI GCGC 1 cut(s) 220
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 3 cut(s) 625, 689, 695
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HindIII AAGCTT 2 cut(s) 320, 560
HinfI GANTC 3 cut(s) 570, 758, 818
HpaII CCGG 2 cut(s) 236, 914
HphI GGTGA 3 cut(s) 112, 401, 739
Hpy166II GTNNAC 3 cut(s) 69, 722, 919
Hpy188I TCNGA 3 cut(s) 382, 496, 744
Hpy188III TCNNGA 5 cut(s) 359, 514, 536, 649, 875
Hpy8I GTNNAC 3 cut(s) 69, 722, 919
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 3 cut(s) 258, 433, 739
HpyCH4III ACNGT 3 cut(s) 142, 305, 859
HpyCH4V TGCA 3 cut(s) 244, 625, 785
HpyF10VI GCNNNNNNNGC 6 cut(s) 132, 158, 198, 241, 250, 506
HpyF3I CTNAG 4 cut(s) 168, 381, 435, 762
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 3 cut(s) 625, 689, 695
HspAI GCGC 1 cut(s) 218
KasI GGCGCC 1 cut(s) 217
Kzo9I GATC 4 cut(s) 24, 431, 677, 871
LguI GCTCTTC 2 cut(s) 380, 655
LmnI GCTCC 2 cut(s) 166, 197
Lsp1109I GCAGC 2 cut(s) 261, 518
LweI GCATC 3 cut(s) 487, 541, 868
MaeI CTAG 2 cut(s) 503, 656
MaeIII GTNAC 6 cut(s) 79, 103, 349, 748, 778, 859
MalI GATC 4 cut(s) 26, 433, 679, 873
MboI GATC 4 cut(s) 24, 431, 677, 871
MboII GAAGA 9 cut(s) 20, 48, 367, 441, 637, 672, 784, 814, 844
MflI RGATCY 1 cut(s) 431
MluCI AATT 4 cut(s) 44, 392, 555, 616
Mly113I GGCGCC 1 cut(s) 218
MlyI GAGTC 1 cut(s) 564
MmeI TCCRAC 3 cut(s) 219, 659, 682
MseI TTAA 2 cut(s) 558, 825
MslI CAYNNNNRTG 3 cut(s) 537, 690, 696
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 2 cut(s) 236, 914
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 6 cut(s) 132, 158, 198, 241, 250, 506
NarI GGCGCC 1 cut(s) 218
NdeII GATC 4 cut(s) 24, 431, 677, 871
NlaIII CATG 3 cut(s) 625, 689, 695
NlaIV GGNNCC 5 cut(s) 162, 174, 193, 219, 259
NmuCI GTSAC 4 cut(s) 79, 103, 778, 859
PciSI GCTCTTC 2 cut(s) 380, 655
PfeI GAWTC 2 cut(s) 758, 818
PkrI GCNGC 3 cut(s) 154, 276, 508
PleI GAGTC 1 cut(s) 564
PluTI GGCGCC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 5 cut(s) 162, 174, 193, 219, 259
PspPI GGNCC 3 cut(s) 172, 257, 740
PstI CTGCAG 1 cut(s) 787
PstNI CAGNNNCTG 1 cut(s) 821
PsuI RGATCY 1 cut(s) 431
PvuII CAGCTG 1 cut(s) 470
RseI CAYNNNNRTG 3 cut(s) 537, 690, 696
SalI GTCGAC 1 cut(s) 67
SapI GCTCTTC 2 cut(s) 380, 655
SaqAI TTAA 2 cut(s) 558, 825
SatI GCNGC 3 cut(s) 153, 275, 507
Sau3AI GATC 4 cut(s) 24, 431, 677, 871
Sau96I GGNCC 3 cut(s) 172, 257, 740
SchI GAGTC 1 cut(s) 564
ScrFI CCNGG 1 cut(s) 255
SfaNI GCATC 3 cut(s) 487, 541, 868
SfcI CTRYAG 3 cut(s) 208, 753, 783
SfoI GGCGCC 1 cut(s) 219
SinI GGWCC 2 cut(s) 257, 740
SmiMI CAYNNNNRTG 3 cut(s) 537, 690, 696
Sse9I AATT 4 cut(s) 44, 392, 555, 616
SsiI CCGC 5 cut(s) 152, 155, 186, 199, 898
SspDI GGCGCC 1 cut(s) 217
SspMI CTAG 2 cut(s) 503, 656
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 3 cut(s) 142, 305, 859
TaqI TCGA 3 cut(s) 68, 358, 513
TasI AATT 4 cut(s) 44, 392, 555, 616
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 2 cut(s) 758, 818
Tru1I TTAA 2 cut(s) 558, 825
Tru9I TTAA 2 cut(s) 558, 825
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 4 cut(s) 79, 103, 778, 859
TseI GCWGC 2 cut(s) 274, 506
Tsp45I GTSAC 4 cut(s) 79, 103, 778, 859
TspDTI ATGAA 3 cut(s) 314, 610, 674
TspRI CASTG 1 cut(s) 310
VpaK11BI GGWCC 2 cut(s) 257, 740
XapI RAATTY 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 2 cut(s) 503, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.