Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004203

Physical Location & Seq

Genomic Coordinates Reverse (-)

11524698 .. 11527263

Gene Structure 2566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G125300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGAACATGGGTCCTTATCTGATCCCAGCCAATCCACATTTTCTTTGATTGATGAGGATCATACATATGCGAATGCGATCAGGTTCACTTTAAATCAGGATCCAAGGACAAAATTTTGTGGGTACAGCATTCCTCATCCATCCGATAACCGAGTTAATATTAGAGTCCAAACAACAGGTGCTGCAGCGAAAGAAGTATTCAAAGATGCAAGCCAGGATCTCATGGTTGTATGCCAACATGTGAGGAGCACCTTTGACAAGGCTGTCGTTGATTTTAGAATGAGCAAATCCGTGAATGGCATGGATATTGACTCAAATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_L_2

Protein Analysis

108

Amino Acids

11.96

Weight (kDa)

5.69

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29540 AT2G29540 AT2G29540
fragaria_vesca	FvH4_6g26980 FvH4_7g06540
malus_domestica	MD10G1078400.v1.1
prunus_persica	Prupe.2G047700_v2.0.a1 Prupe.2G047700_v2.0.a1 Prupe.3G125300_v2.0.a1 Prupe.3G125300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0334971 RchiOBHm_Chr2g0128821
rosa_laevigata	RLG00000019027
rosa_multiflora	Rmu_sc0007061.1_g000007 Rmu_sc0009556.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115240 Rroxscaffold_4G00316330
rosa_rugosa	Rorug01G0118200 Rorug02G0281300 Rorug02G0281400 Rorug02G0281500 Rorug02G0281600 Rorug02G0281600
rosa_samantha	Rh1AG141500 Rh1BG110000 Rh1CG133400 Rh1DG146100 Rh2AG334100 Rh2BG342100 Rh2CG321000 Rh2DG358800
rosa_wichuraiana	Rw1G011740 Rw2G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AclWI	GGATC	5 cut(s)	17, 66, 95, 108, 225
AcsI	RAATTY	1 cut(s)	113
AfaI	GTAC	1 cut(s)	125
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	213
Alw21I	GWGCWC	1 cut(s)	251
AlwI	GGATC	5 cut(s)	17, 66, 95, 108, 225
AlwNI	CAGNNNCTG	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	182, 185
ApoI	RAATTY	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	12
BamHI	GGATCC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	169, 197
BccI	CCATC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	2 cut(s)	183, 186
BlsI	GCNGC	2 cut(s)	184, 187
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	2 cut(s)	13, 102
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	2 cut(s)	136, 140
BseJI	GATNNNNATC	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	259
BseXI	GCAGC	2 cut(s)	169, 197
BseYI	CCCAGC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	251
BsmI	GAATGC	2 cut(s)	79, 129
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	5 cut(s)	22, 58, 78, 100, 217
BspLI	GGNNCC	2 cut(s)	13, 102
BspMAI	CTGCAG	1 cut(s)	187
BspPI	GGATC	5 cut(s)	17, 66, 95, 108, 225
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	5 cut(s)	22, 58, 78, 100, 217
BssT1I	CCWWGG	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	136, 140
BstKTI	GATC	5 cut(s)	25, 61, 81, 103, 220
BstMBI	GATC	5 cut(s)	22, 58, 78, 100, 217
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	169, 197
BstX2I	RGATCY	2 cut(s)	100, 217
BstYI	RGATCY	2 cut(s)	100, 217
BtsCI	GGATG	2 cut(s)	136, 140
Cac8I	GCNNGC	1 cut(s)	211
CaiI	CAGNNNCTG	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	4 cut(s)	8, 223, 239, 301
CviJI	RGCY	3 cut(s)	30, 213, 263
CviKI_1	RGCY	3 cut(s)	30, 213, 263
CviQI	GTAC	1 cut(s)	124
DpnI	GATC	5 cut(s)	24, 60, 80, 102, 219
DpnII	GATC	5 cut(s)	22, 58, 78, 100, 217
DraI	TTTAAA	1 cut(s)	93
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	4 cut(s)	11, 226, 242, 304
FaiI	YATR	8 cut(s)	9, 63, 67, 69, 224, 232, 240, 302
FatI	CATG	4 cut(s)	7, 222, 238, 300
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	183, 186
FokI	GGATG	2 cut(s)	123, 127
Fsp4HI	GCNGC	2 cut(s)	183, 186
GluI	GCNGC	2 cut(s)	183, 186
GsaI	CCCAGC	1 cut(s)	30
Hin1II	CATG	4 cut(s)	11, 226, 242, 304
HinfI	GANTC	2 cut(s)	165, 311
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	22, 145
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	185, 209
Hsp92II	CATG	4 cut(s)	11, 226, 242, 304
Kzo9I	GATC	5 cut(s)	22, 58, 78, 100, 217
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	6 cut(s)	40, 67, 83, 162, 200, 227
Lsp1109I	GCAGC	2 cut(s)	169, 197
LweI	GCATC	1 cut(s)	196
MalI	GATC	5 cut(s)	24, 60, 80, 102, 219
MboI	GATC	5 cut(s)	22, 58, 78, 100, 217
MflI	RGATCY	2 cut(s)	100, 217
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	2 cut(s)	113, 319
MlyI	GAGTC	2 cut(s)	174, 305
MnlI	CCTC	3 cut(s)	49, 144, 237
MseI	TTAA	3 cut(s)	92, 156, 322
MslI	CAYNNNNRTG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	215
Mva1269I	GAATGC	2 cut(s)	79, 129
MvaI	CCWGG	1 cut(s)	215
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	5 cut(s)	22, 58, 78, 100, 217
NlaIII	CATG	4 cut(s)	11, 226, 242, 304
NlaIV	GGNNCC	2 cut(s)	13, 102
NspI	RCATGY	1 cut(s)	242
PciI	ACATGT	1 cut(s)	238
PctI	GAATGC	2 cut(s)	79, 129
PkrI	GCNGC	2 cut(s)	184, 187
PleI	GAGTC	2 cut(s)	173, 305
PpsI	GAGTC	2 cut(s)	173, 305
PpuMI	RGGWCCY	1 cut(s)	12
PscI	ACATGT	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	13, 102
PspPI	GGNCC	1 cut(s)	12
PspPPI	RGGWCCY	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	2 cut(s)	100, 217
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	3 cut(s)	92, 156, 322
SatI	GCNGC	2 cut(s)	183, 186
Sau3AI	GATC	5 cut(s)	22, 58, 78, 100, 217
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	2 cut(s)	174, 305
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	3 cut(s)	86, 181, 254
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	66
Sse9I	AATT	2 cut(s)	113, 319
SspI	AATATT	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	104
TasI	AATT	2 cut(s)	113, 319
Tru1I	TTAA	3 cut(s)	92, 156, 322
Tru9I	TTAA	3 cut(s)	92, 156, 322
TseI	GCWGC	2 cut(s)	182, 185
TspGWI	ACGGA	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	12
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.