Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004167

Physical Location & Seq

Genomic Coordinates Reverse (-)

30366678 .. 30371496

Gene Structure 4819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0281600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTCTCTCTCCAACTCTGTCTCACAACTCATTCTCATCCTTCTCTCCCTTCCCGCAGACTTTGAGAAGAAGCCCTCTTCACCTTTTGCCCATTAGAGCTGTAAAAGCTGCTGCAGAACCAGAAAAGGAGAAACTCAAACAGGACAAAACTCCCAAAGAGTCTAGTTCCAATGCTCAGCCTTCAAGTCCAAGCAAAGGCACACCTACTGTTAAGCTTCCAAAGAAGCCTGTCTATTCCATGAAGAAGGGTCAGATTGTGAGGGTGGACAAAGAGAAGTATCTTAATAGTGTTAATTATCTATCTGTTGGACATCCACCTTATTACAAAGGGCTGGACTATATTTATGAAGACCGTGGTGAGGTATTGGATTTGCGCATATTTGAGACTGGAGAGTATGCACTGATAGCATGGGTTGGGGTACCTACTGCACCGGCATGGCTTCCAACAGACATGCTCATCAAGTCAGAGAAACTCGATTATGAGAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002199 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005856 GO:0005874 GO:0006457 GO:0006458 GO:0006810 GO:0007338 GO:0007339 GO:0008037 GO:0008150 GO:0009566 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009988 GO:0010035 GO:0010038 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0015630 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0035036 GO:0042221 GO:0042802 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044183 GO:0044297 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045935 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051052 GO:0051054 GO:0051082 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051704 GO:0060255 GO:0060341 GO:0061077 GO:0065007 GO:0065008 GO:0070201 GO:0070202 GO:0070203 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0101031 GO:1901998 GO:1903827 GO:1903829 GO:1904356 GO:1904358 GO:1904814 GO:1904816 GO:1904851 GO:1904951 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

164

Amino Acids

18.48

Weight (kDa)

9.38

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhO	PF11910	81 - 154	3.3e-22	Cyanobacterial and plant NDH-1 subunit O

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11830 AT3G11830
fragaria_vesca	FvH4_3g27240 FvH4_3g27240 FvH4_3g27240 FvH4_3g27240
malus_domestica	MD03G1164100.v1.1
prunus_persica	Prupe.6G154400_v2.0.a1 Prupe.6G154400_v2.0.a1
pyrus_communis	pycom11g15670 pycom12499g00060
rosa_chinensis	RchiOBHm_Chr2g0128841 RchiOBHm_Chr5g0049871
rosa_laevigata	RLG00000019032 RLG00000034659
rosa_multiflora	Rmu_sc0007061.1_g000001 Rmu_sc0008387.1_g000010 Rmu_sc0035081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031490 Rroxscaffold_2G00115180
rosa_rugosa	Rorug02G0281600 Rorug02G0281700 Rorug05G0253500
rosa_samantha	Rh2AG334200 Rh2BG342200 Rh2CG321100 Rh2DG358900 Rh5AG328400 Rh5BG338900 Rh5CG364600 Rh5DG351300
rosa_wichuraiana	Rw2G027020 Rw5G031010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	377
Acc65I	GGTACC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	421
AciI	CCGC	1 cut(s)	56
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	2 cut(s)	197, 361
AgsI	TTSAA	1 cut(s)	186
AluBI	AGCT	3 cut(s)	101, 110, 217
AluI	AGCT	3 cut(s)	101, 110, 217
Alw26I	GTCTC	2 cut(s)	27, 380
ApeKI	GCWGC	2 cut(s)	110, 113
Asp718I	GGTACC	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	74, 371
BanI	GGYRCC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	97, 100
BcoDI	GTCTC	2 cut(s)	27, 380
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	111, 114
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	2 cut(s)	112, 115
BmiI	GGNNCC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	411
Bpu1102I	GCTNAGC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 361
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	394
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	38, 313
BseLI	CCNNNNNNNGG	2 cut(s)	197, 361
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	394
BseXI	GCAGC	2 cut(s)	97, 100
BsgI	GTGCAG	1 cut(s)	414
BshNI	GGYRCC	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	434
BslI	CCNNNNNNNGG	2 cut(s)	197, 361
BsmAI	GTCTC	2 cut(s)	27, 380
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	423
BspMAI	CTGCAG	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	421
BsrFI	RCCGGY	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	1 cut(s)	355
Bst4CI	ACNGT	2 cut(s)	211, 356
Bst6I	CTCTTC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	38, 313
BstHHI	GCGC	1 cut(s)	378
BstMAI	GTCTC	2 cut(s)	27, 380
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 407
BstNSI	RCATGY	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	97, 100
BstV2I	GAAGAC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	38, 313
BtsIMutI	CAGTG	1 cut(s)	401
CfoI	GCGC	1 cut(s)	378
Cfr10I	RCCGGY	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	4 cut(s)	241, 411, 438, 454
CviJI	RGCY	9 cut(s)	5, 75, 101, 110, 181, 217, 229, 334, 442
CviKI_1	RGCY	9 cut(s)	5, 75, 101, 110, 181, 217, 229, 334, 442
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
FaeI	CATG	4 cut(s)	244, 414, 441, 457
FaiI	YATR	9 cut(s)	242, 342, 348, 380, 399, 412, 439, 455, 483
FatI	CATG	4 cut(s)	240, 410, 437, 453
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	111, 114
FokI	GGATG	2 cut(s)	25, 300
Fsp4HI	GCNGC	2 cut(s)	111, 114
FspBI	CTAG	1 cut(s)	165
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	2 cut(s)	111, 114
GsuI	CTGGAG	1 cut(s)	411
HapII	CCGG	1 cut(s)	434
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	4 cut(s)	244, 414, 441, 457
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	2 cut(s)	74, 371
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	255, 469
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	4 cut(s)	52, 61, 192, 241
HpyCH4III	ACNGT	2 cut(s)	211, 356
HpyCH4V	TGCA	3 cut(s)	116, 401, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 407
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	244, 414, 441, 457
HspAI	GCGC	1 cut(s)	376
KpnI	GGTACC	1 cut(s)	425
LpnPI	CCDG	6 cut(s)	128, 135, 243, 320, 375, 447
Lsp1109I	GCAGC	2 cut(s)	97, 100
MaeI	CTAG	1 cut(s)	165
MboII	GAAGA	4 cut(s)	71, 81, 256, 362
MluCI	AATT	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	3 cut(s)	38, 289, 470
MnlI	CCTC	3 cut(s)	87, 255, 355
MseI	TTAA	3 cut(s)	213, 285, 294
MslI	CAYNNNNRTG	1 cut(s)	436
MspI	CCGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	2 cut(s)	107, 407
NlaIII	CATG	4 cut(s)	244, 414, 441, 457
NlaIV	GGNNCC	1 cut(s)	423
NsbI	TGCGCA	1 cut(s)	377
NspI	RCATGY	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	112, 115
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	436
SaqAI	TTAA	3 cut(s)	213, 285, 294
SatI	GCNGC	2 cut(s)	111, 114
SchI	GAGTC	1 cut(s)	170
SetI	ASST	8 cut(s)	87, 103, 112, 208, 219, 322, 366, 427
SfcI	CTRYAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	436
Sse9I	AATT	1 cut(s)	295
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	211, 356
TaqI	TCGA	1 cut(s)	477
TasI	AATT	1 cut(s)	295
Tru1I	TTAA	3 cut(s)	213, 285, 294
Tru9I	TTAA	3 cut(s)	213, 285, 294
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	2 cut(s)	110, 113
TspDTI	ATGAA	2 cut(s)	257, 363
TspRI	CASTG	1 cut(s)	408
XceI	RCATGY	1 cut(s)	457
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.