Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004167

Physical Location & Seq

Genomic Coordinates Reverse (-)

49753255 .. 49757553

Gene Structure 4299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG328400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

ATGGCGAGTATGCTGCAACCGCAGATCATACTTCTGAAGGAGGGCACGGACACTTCTCAAGGGAAGGCGCAGCTGGTTAGCAATATCAACGCCTGCACGGCCGTTGCCGACGTCGTCAGGACCACGCTCGGCCCCAGAGGCATGGACAAGCTTATTCACGACGACAAGGGCAATATCACCATCTCCAACGACGGCGCCACCATCATGAAGTTGCTTGATATCGTTCATCCCGCAGCCAAGATCCTCGTCGACATCGCCAAGTCTCAGGACTCTGAGGTTGGTGATGGAACAACTACAGTTGTTCTGCTTGCAGCCGAGTTCTTGAACGAGGCCAAGCCTTTCGTGGAGGATGGGGTGCACCCACAGAATTTGATCAGGAGTTATCGAACCGCTAGCTCTTTGGCGATTGAGAGAATCAAACAACTTGCTTCCAGCATTGAGGGGAAAAGCCTCGAAGAGAAGAAGGAGCTACTAGCTAACTGTGCTGCTACAACACTCTCTTCAAAACTCATTGGGGGAGAAAAGGAGTTCTTTGCACAAATGGTTGTGGATGCTGTCATTGCAATAGGTGATGAGGATCGTCTTAACATGATTGGAATAAAGAAGGTTTCTGGTGGCAACATGCGTGATTCCTTTCTAGTAAATGGCGTTGCCTTTAAGAAGACATTTTCTTATGCCGGTTTTGAACAGCAACCAAAAAAGTTTCTTAATCCGAAGATACTGATACTAAATATTGAATTGGAGCTTAAATCCGAGAAAGAAAATGCTGAGATAAGATTGTCAGACCCATCCCAGTATCAGTCCATTGTTGATGCTGAATGGAATATTATTTATGACAAGCTGGATAAGTGTGTGCAGAGTGGGGCTAAAGTTGTTCTTTCACGGTTGGCTATTGGTGATCTAGCAACACAGTATTTCGCAGATCGAGATATATTCTGTGCTGGCCGTGTGGCTGAAGAAGATCTGCAAAGGGTAGCCGCTGCAACTGGTGGCACTGTGCAGACATCCATTAATGATGTTATTGATGAGGTCCTTGGAACATGCGAGTGTTTTGAAGAAAAGCAAGTTGGAAATGAGAGGTTTAATATCTTTAGTGGATGTCCATCTGGTAGGACTGCTACAATTGTTCTTCGTGGTGGAGCTGATCAGTTCATTGAAGAAGCTGAGCGTAGTTTACATGATGCGATCATGATTGTTAGAAGGGCTTTAAAGAATTCAACTGTAGTTCCTGGGGGTGGTGCTATAGATATGGAGATCAGCCGTTACTTGAGGGACAAAGCGCGTGAAATTGCTGGGAGGTCTCAGTTTTTCATCAACTCATACGCAAAAGCTCTGGAGGTTATCCCACGACAGCTATGTGACAATGCAGGATTTGATGCGACTGATATGCTAAACAAACTAAGACAGAAACACTCGACAGCTGAGGGTGCACCTTATGGAGTTGACATTAACTCTGGAGGAATTGCTGATTCGTATGCTAAATTTGTCTGGGAGCCAGCAGTTGTAAAGATCAATGCTATAAATGCTGCTACTGAGGCTGCTTGCCTTGTTTTAAGTGTCGATGAGACAGTGAAAAATCCAAAGGTATGTGGGTTCTATTTACTGTTTCTAGGTGATTATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002199 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005856 GO:0005874 GO:0006457 GO:0006458 GO:0006810 GO:0007338 GO:0007339 GO:0008037 GO:0008150 GO:0009566 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009988 GO:0010035 GO:0010038 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0015630 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0035036 GO:0042221 GO:0042802 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044183 GO:0044297 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045935 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051052 GO:0051054 GO:0051082 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051704 GO:0060255 GO:0060341 GO:0061077 GO:0065007 GO:0065008 GO:0070201 GO:0070202 GO:0070203 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0101031 GO:1901998 GO:1903827 GO:1903829 GO:1904356 GO:1904358 GO:1904814 GO:1904816 GO:1904851 GO:1904951 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

541

Amino Acids

58.79

Weight (kDa)

5.16

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	35 - 526	6.5e-165	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11830 AT3G11830
fragaria_vesca	FvH4_3g27240 FvH4_3g27240 FvH4_3g27240 FvH4_3g27240
malus_domestica	MD03G1164100.v1.1
prunus_persica	Prupe.6G154400_v2.0.a1 Prupe.6G154400_v2.0.a1
pyrus_communis	pycom11g15670 pycom12499g00060
rosa_chinensis	RchiOBHm_Chr2g0128841 RchiOBHm_Chr5g0049871
rosa_laevigata	RLG00000019032 RLG00000034659
rosa_multiflora	Rmu_sc0007061.1_g000001 Rmu_sc0008387.1_g000010 Rmu_sc0035081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031490 Rroxscaffold_2G00115180
rosa_rugosa	Rorug02G0281600 Rorug02G0281700 Rorug05G0253500
rosa_samantha	Rh2AG334200 Rh2BG342200 Rh2CG321100 Rh2DG358900 Rh5AG328400 Rh5BG338900 Rh5CG364600 Rh5DG351300
rosa_wichuraiana	Rw2G027020 Rw5G031010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	1282
AciI	CCGC	4 cut(s)	20, 231, 390, 978
AclWI	GGATC	2 cut(s)	235, 585
AcoI	YGGCCR	2 cut(s)	99, 943
AcsI	RAATTY	3 cut(s)	367, 1213, 1481
AcuI	CTGAAG	2 cut(s)	56, 975
AcyI	GRCGYC	2 cut(s)	111, 195
AfiI	CCNNNNNNNGG	1 cut(s)	1235
AgsI	TTSAA	7 cut(s)	325, 504, 686, 737, 1055, 1157, 1218
AjnI	CCWGG	1 cut(s)	1228
AjuI	GAANNNNNNNTTGG	2 cut(s)	1050, 1082
Alw21I	GWGCWC	2 cut(s)	360, 1432
Alw26I	GTCTC	3 cut(s)	267, 1305, 1559
Alw44I	GTGCAC	2 cut(s)	356, 1428
AlwI	GGATC	2 cut(s)	235, 585
AoxI	GGCC	4 cut(s)	99, 130, 330, 943
ApaLI	GTGCAC	2 cut(s)	356, 1428
ApeKI	GCWGC	8 cut(s)	13, 70, 233, 311, 485, 980, 1526, 1538
ApoI	RAATTY	3 cut(s)	367, 1213, 1481
AseI	ATTAAT	1 cut(s)	1011
AspLEI	GCGC	3 cut(s)	70, 197, 1282
AspS9I	GGNCC	3 cut(s)	120, 131, 1030
AsuHPI	GGTGA	5 cut(s)	169, 293, 581, 908, 1625
AsuNHI	GCTAGC	1 cut(s)	392
AvaII	GGWCC	2 cut(s)	120, 1030
BaeGI	GKGCMC	3 cut(s)	47, 360, 1432
BanI	GGYRCC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	2 cut(s)	360, 1432
BbvCI	CCTCAGC	1 cut(s)	1422
BbvI	GCAGC	7 cut(s)	82, 245, 323, 472, 967, 1513, 1525
BccI	CCATC	6 cut(s)	188, 209, 278, 344, 796, 1111
BceAI	ACGGC	5 cut(s)	86, 114, 208, 930, 1245
BcgI	CGANNNNNNTGC	3 cut(s)	29, 1369, 1403
BciT130I	CCWGG	1 cut(s)	1230
BclI	TGATCA	2 cut(s)	372, 1144
BcoDI	GTCTC	3 cut(s)	267, 1305, 1559
BfaI	CTAG	5 cut(s)	393, 473, 638, 902, 1610
BfmI	CTRYAG	3 cut(s)	294, 1221, 1242
BfoI	RGCGCY	1 cut(s)	198
BglI	GCCNNNNNGGC	2 cut(s)	98, 138
BglII	AGATCT	1 cut(s)	961
BisI	GCNGC	9 cut(s)	14, 71, 234, 312, 486, 978, 981, 1527, 1539
BlpI	GCTNAGC	1 cut(s)	1164
BlsI	GCNGC	9 cut(s)	15, 72, 235, 313, 487, 979, 982, 1528, 1540
Bme1390I	CCNGG	1 cut(s)	1230
Bme18I	GGWCC	2 cut(s)	120, 1030
BmgT120I	GGNCC	3 cut(s)	120, 131, 1030
BmiI	GGNNCC	3 cut(s)	133, 196, 1494
BmrFI	CCNGG	1 cut(s)	1230
BmrI	ACTGGG	1 cut(s)	787
BmsI	GCATC	4 cut(s)	541, 802, 1171, 1366
BmtI	GCTAGC	1 cut(s)	396
BmuI	ACTGGG	1 cut(s)	787
BpiI	GAAGAC	1 cut(s)	668
BpmI	CTGGAG	2 cut(s)	1355, 1476
Bpu10I	CCTNAGC	1 cut(s)	1422
Bpu1102I	GCTNAGC	1 cut(s)	1164
BpuEI	CTTGAG	2 cut(s)	42, 1288
BsaBI	GATNNNNATC	2 cut(s)	576, 1102
BsaHI	GRCGYC	2 cut(s)	111, 195
BsaI	GGTCTC	1 cut(s)	1305
BsaJI	CCNNGG	2 cut(s)	1033, 1229
Bsc4I	CCNNNNNNNGG	1 cut(s)	1235
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	2 cut(s)	793, 991
Bse3DI	GCAATG	1 cut(s)	558
Bse8I	GATNNNNATC	2 cut(s)	576, 1102
BseBI	CCWGG	1 cut(s)	1230
BseDI	CCNNGG	2 cut(s)	1033, 1229
BseGI	GGATG	6 cut(s)	226, 355, 556, 788, 1004, 1103
BseJI	GATNNNNATC	2 cut(s)	576, 1102
BseLI	CCNNNNNNNGG	1 cut(s)	1235
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	7 cut(s)	264, 278, 759, 1155, 1316, 1413, 1524
BseNI	ACTGG	2 cut(s)	793, 991
BseSI	GKGCMC	3 cut(s)	47, 360, 1432
BseX3I	CGGCCG	1 cut(s)	99
BseXI	GCAGC	7 cut(s)	82, 245, 323, 472, 967, 1513, 1525
BseYI	CCCAGC	1 cut(s)	1292
BsgI	GTGCAG	3 cut(s)	79, 875, 1019
Bsh1236I	CGCG	1 cut(s)	1282
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	4 cut(s)	101, 132, 332, 945
BshNI	GGYRCC	1 cut(s)	194
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	2 cut(s)	360, 1432
BsiSI	CCGG	1 cut(s)	678
BslFI	GGGAC	1 cut(s)	1286
BslI	CCNNNNNNNGG	1 cut(s)	1235
BsmAI	GTCTC	3 cut(s)	267, 1305, 1559
BsmFI	GGGAC	1 cut(s)	1286
BsnI	GGCC	4 cut(s)	101, 132, 332, 945
Bso31I	GGTCTC	1 cut(s)	1305
Bsp1286I	GDGCHC	3 cut(s)	47, 360, 1432
Bsp1720I	GCTNAGC	1 cut(s)	1164
BspACI	CCGC	4 cut(s)	20, 231, 390, 978
BspANI	GGCC	4 cut(s)	101, 132, 332, 945
BspCNI	CTCAG	7 cut(s)	265, 277, 760, 1156, 1315, 1414, 1525
BspFNI	CGCG	1 cut(s)	1282
BspHI	TCATGA	2 cut(s)	204, 1188
BspLI	GGNNCC	3 cut(s)	133, 196, 1494
BspOI	GCTAGC	1 cut(s)	396
BspPI	GGATC	2 cut(s)	235, 585
BspT107I	GGYRCC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	1305
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	2 cut(s)	793, 991
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	2 cut(s)	1033, 1229
BssNI	GRCGYC	2 cut(s)	111, 195
BssT1I	CCWWGG	1 cut(s)	1033
Bst2UI	CCWGG	1 cut(s)	1230
Bst4CI	ACNGT	8 cut(s)	298, 482, 885, 912, 997, 1222, 1570, 1605
Bst6I	CTCTTC	2 cut(s)	450, 505
BstACI	GRCGYC	2 cut(s)	111, 195
BstC8I	GCNNGC	6 cut(s)	94, 309, 394, 943, 1497, 1543
BstDEI	CTNAG	8 cut(s)	264, 273, 768, 1164, 1302, 1400, 1422, 1533
BstF5I	GGATG	6 cut(s)	226, 355, 556, 788, 1004, 1103
BstFNI	CGCG	1 cut(s)	1282
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	3 cut(s)	70, 197, 1282
BstMAI	GTCTC	3 cut(s)	267, 1305, 1559
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	8 cut(s)	19, 98, 138, 482, 560, 1427, 1523, 1535
BstNI	CCWGG	1 cut(s)	1230
BstNSI	RCATGY	2 cut(s)	625, 1044
BstSCI	CCNGG	1 cut(s)	1228
BstSFI	CTRYAG	3 cut(s)	294, 1221, 1242
BstSLI	GKGCMC	3 cut(s)	47, 360, 1432
BstUI	CGCG	1 cut(s)	1282
BstV1I	GCAGC	7 cut(s)	82, 245, 323, 472, 967, 1513, 1525
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	2 cut(s)	240, 961
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	2 cut(s)	240, 961
BstZI	CGGCCG	1 cut(s)	99
BsuRI	GGCC	4 cut(s)	101, 132, 332, 945
BtgZI	GCGATG	1 cut(s)	238
BtsCI	GGATG	6 cut(s)	226, 355, 556, 788, 1004, 1103
BtsIMutI	CAGTG	2 cut(s)	993, 1575
Cac8I	GCNNGC	6 cut(s)	94, 309, 394, 943, 1497, 1543
CciI	TCATGA	2 cut(s)	204, 1188
CfoI	GCGC	3 cut(s)	70, 197, 1282
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	3 cut(s)	120, 131, 1030
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	7 cut(s)	142, 205, 589, 622, 1041, 1178, 1189
DdeI	CTNAG	8 cut(s)	264, 273, 768, 1164, 1302, 1400, 1422, 1533
DinI	GGCGCC	1 cut(s)	196
DraI	TTTAAA	1 cut(s)	1209
EaeI	YGGCCR	2 cut(s)	99, 943
EagI	CGGCCG	1 cut(s)	99
Eam1104I	CTCTTC	2 cut(s)	450, 505
EarI	CTCTTC	2 cut(s)	450, 505
EclXI	CGGCCG	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	1033
Eco31I	GGTCTC	1 cut(s)	1305
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	120, 1030
Eco52I	CGGCCG	1 cut(s)	99
Eco57I	CTGAAG	2 cut(s)	56, 975
EcoO109I	RGGNCCY	1 cut(s)	1030
EcoRI	GAATTC	1 cut(s)	1213
EcoRII	CCWGG	1 cut(s)	1228
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	1033
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	1033
FaeI	CATG	7 cut(s)	145, 208, 592, 625, 1044, 1181, 1192
FalI	AAGNNNNNCTT	4 cut(s)	515, 547, 861, 893
FaqI	GGGAC	1 cut(s)	1286
FatI	CATG	7 cut(s)	141, 204, 588, 621, 1040, 1177, 1188
FauI	CCCGC	1 cut(s)	238
FbaI	TGATCA	2 cut(s)	372, 1144
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	9 cut(s)	14, 71, 234, 312, 486, 978, 981, 1527, 1539
FokI	GGATG	6 cut(s)	213, 362, 563, 775, 991, 1110
Fsp4HI	GCNGC	9 cut(s)	14, 71, 234, 312, 486, 978, 981, 1527, 1539
FspBI	CTAG	5 cut(s)	393, 473, 638, 902, 1610
GlaI	GCGC	3 cut(s)	69, 196, 1281
GluI	GCNGC	9 cut(s)	14, 71, 234, 312, 486, 978, 981, 1527, 1539
GsaI	CCCAGC	1 cut(s)	1296
GsuI	CTGGAG	2 cut(s)	1355, 1476
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	4 cut(s)	101, 132, 332, 945
HapII	CCGG	1 cut(s)	678
HhaI	GCGC	3 cut(s)	70, 197, 1282
Hin1I	GRCGYC	2 cut(s)	111, 195
Hin1II	CATG	7 cut(s)	145, 208, 592, 625, 1044, 1181, 1192
Hin6I	GCGC	3 cut(s)	68, 195, 1280
HinP1I	GCGC	3 cut(s)	68, 195, 1280
HincII	GTYRAC	2 cut(s)	250, 1444
HindII	GTYRAC	2 cut(s)	250, 1444
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	4 cut(s)	269, 414, 629, 1469
HpaII	CCGG	1 cut(s)	678
HphI	GGTGA	5 cut(s)	169, 293, 581, 908, 1625
Hpy166II	GTNNAC	5 cut(s)	250, 358, 1175, 1430, 1444
Hpy188I	TCNGA	5 cut(s)	36, 274, 714, 754, 784
Hpy8I	GTNNAC	5 cut(s)	250, 358, 1175, 1430, 1444
Hpy99I	CGWCG	5 cut(s)	113, 116, 164, 194, 251
HpyAV	CCTTC	5 cut(s)	31, 58, 457, 598, 1194
HpyCH4III	ACNGT	8 cut(s)	298, 482, 885, 912, 997, 1222, 1570, 1605
HpyCH4IV	ACGT	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	8 cut(s)	19, 98, 138, 482, 560, 1427, 1523, 1535
HpyF3I	CTNAG	8 cut(s)	264, 273, 768, 1164, 1302, 1400, 1422, 1533
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	2 cut(s)	111, 195
Hsp92II	CATG	7 cut(s)	145, 208, 592, 625, 1044, 1181, 1192
HspAI	GCGC	3 cut(s)	68, 195, 1280
KasI	GGCGCC	1 cut(s)	194
Ksp22I	TGATCA	2 cut(s)	372, 1144
LmnI	GCTCC	4 cut(s)	466, 742, 1139, 1492
Lsp1109I	GCAGC	7 cut(s)	82, 245, 323, 472, 967, 1513, 1525
LweI	GCATC	4 cut(s)	541, 802, 1171, 1366
MaeI	CTAG	5 cut(s)	393, 473, 638, 902, 1610
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	1262, 1358
MfeI	CAATTG	1 cut(s)	1122
MflI	RGATCY	2 cut(s)	240, 961
MhlI	GDGCHC	3 cut(s)	47, 360, 1432
MluCI	AATT	7 cut(s)	367, 737, 1122, 1213, 1287, 1461, 1481
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	2 cut(s)	210, 1048
MseI	TTAA	9 cut(s)	585, 657, 708, 747, 1011, 1083, 1208, 1449, 1553
MslI	CAYNNNNRTG	2 cut(s)	203, 1045
MspA1I	CMGCKG	3 cut(s)	73, 980, 1421
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	1 cut(s)	1230
MunI	CAATTG	1 cut(s)	1122
MvaI	CCWGG	1 cut(s)	1230
MvnI	CGCG	1 cut(s)	1282
MwoI	GCNNNNNNNGC	8 cut(s)	19, 98, 138, 482, 560, 1427, 1523, 1535
NarI	GGCGCC	1 cut(s)	195
NheI	GCTAGC	1 cut(s)	392
NlaIII	CATG	7 cut(s)	145, 208, 592, 625, 1044, 1181, 1192
NlaIV	GGNNCC	3 cut(s)	133, 196, 1494
NmeAIII	GCCGAG	2 cut(s)	108, 340
NmuCI	GTSAC	1 cut(s)	1358
NspI	RCATGY	2 cut(s)	625, 1044
PagI	TCATGA	2 cut(s)	204, 1188
PfeI	GAWTC	3 cut(s)	414, 629, 1469
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	9 cut(s)	15, 72, 235, 313, 487, 979, 982, 1528, 1540
PleI	GAGTC	1 cut(s)	263
PluTI	GGCGCC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	263
PpuMI	RGGWCCY	1 cut(s)	1030
PshBI	ATTAAT	1 cut(s)	1011
Psp5II	RGGWCCY	1 cut(s)	1030
Psp6I	CCWGG	1 cut(s)	1228
PspFI	CCCAGC	1 cut(s)	1292
PspGI	CCWGG	1 cut(s)	1228
PspN4I	GGNNCC	3 cut(s)	133, 196, 1494
PspPI	GGNCC	3 cut(s)	120, 131, 1030
PspPPI	RGGWCCY	1 cut(s)	1030
PsuI	RGATCY	2 cut(s)	240, 961
PsyI	GACNNNGTC	1 cut(s)	113
PvuII	CAGCTG	2 cut(s)	73, 1421
RseI	CAYNNNNRTG	2 cut(s)	203, 1045
SalI	GTCGAC	1 cut(s)	248
SaqAI	TTAA	9 cut(s)	585, 657, 708, 747, 1011, 1083, 1208, 1449, 1553
SatI	GCNGC	9 cut(s)	14, 71, 234, 312, 486, 978, 981, 1527, 1539
Sau96I	GGNCC	3 cut(s)	120, 131, 1030
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	1230
SduI	GDGCHC	3 cut(s)	47, 360, 1432
SfaNI	GCATC	4 cut(s)	541, 802, 1171, 1366
SfcI	CTRYAG	3 cut(s)	294, 1221, 1242
SfoI	GGCGCC	1 cut(s)	196
SinI	GGWCC	2 cut(s)	120, 1030
SmiMI	CAYNNNNRTG	2 cut(s)	203, 1045
SmlI	CTYRAG	2 cut(s)	57, 1267
SmoI	CTYRAG	2 cut(s)	57, 1267
Sse9I	AATT	7 cut(s)	367, 737, 1122, 1213, 1287, 1461, 1481
SsiI	CCGC	4 cut(s)	20, 231, 390, 978
SspDI	GGCGCC	1 cut(s)	194
SspI	AATATT	2 cut(s)	733, 826
SspMI	CTAG	5 cut(s)	393, 473, 638, 902, 1610
StyD4I	CCNGG	1 cut(s)	1228
StyI	CCWWGG	1 cut(s)	1033
TaaI	ACNGT	8 cut(s)	298, 482, 885, 912, 997, 1222, 1570, 1605
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	6 cut(s)	249, 385, 453, 925, 1415, 1560
TasI	AATT	7 cut(s)	367, 737, 1122, 1213, 1287, 1461, 1481
TauI	GCSGC	1 cut(s)	980
TfiI	GAWTC	3 cut(s)	414, 629, 1469
Tru1I	TTAA	9 cut(s)	585, 657, 708, 747, 1011, 1083, 1208, 1449, 1553
Tru9I	TTAA	9 cut(s)	585, 657, 708, 747, 1011, 1083, 1208, 1449, 1553
TscAI	CASTG	2 cut(s)	1000, 1575
TseFI	GTSAC	1 cut(s)	1358
TseI	GCWGC	8 cut(s)	13, 70, 233, 311, 485, 980, 1526, 1538
Tsp45I	GTSAC	1 cut(s)	1358
TspDTI	ATGAA	4 cut(s)	215, 221, 1141, 1300
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	2 cut(s)	1000, 1575
Tth111I	GACNNNGTC	1 cut(s)	113
VneI	GTGCAC	2 cut(s)	356, 1428
VpaK11BI	GGWCC	2 cut(s)	120, 1030
VspI	ATTAAT	1 cut(s)	1011
XapI	RAATTY	3 cut(s)	367, 1213, 1481
XceI	RCATGY	2 cut(s)	625, 1044
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	5 cut(s)	393, 473, 638, 902, 1610
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.