Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035081.1

Orthogroup ID

OG0004167

Physical Location & Seq

Genomic Coordinates Reverse (-)

195 .. 3236

Gene Structure 3042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035081.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgtggaagttaagtggaaatttgcgatatcttcagcatcgagatatattctgtgctggccgtgtagctgaagaagatctgcaaagggtagctgctgccagtggtggcactgtgcagacatccatcaatgatgttattgatgaggtccttggaacatgcgaatgttttgaagaaaagcaagttggaaatgagaggtttaatatctttagtggatgcccatctggtaggactgccacaattgttcttcgcggtggagctgatcagttcattgaggaagctgagcgtagtttgcatgatgcgatcatgattgttagaagggctttaaagaattcaactgtggttcctggtggtggtgctatagatatggagatcagccgttacttgagggacaaagcgcgtgaaattgctgggaggtctcagtttttcatcaactcatacgcaaaagctctggaggttatcccacgacaactatgtgacaatgcgggatttgacgcgactgatatgctaaacaaactaagacagaaacactcgacaggtgggggtgcaccttatggagttgacattaacaccggaggaattactgattcgtatgctaactttgtctgggagccagcagttgtaaagatcaatgctataaatgctgctactgaggctgcttgccttgttttaagtgttgacgagacggtgaaaaatccaaagtctgagagtgcccagggagatgctgctgctggtgccatgggaggtagagggcgtggaggagctgcttttcgtggacgtggtcgtggaatgcgaagacgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002199 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005856 GO:0005874 GO:0006457 GO:0006458 GO:0006810 GO:0007338 GO:0007339 GO:0008037 GO:0008150 GO:0009566 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009988 GO:0010035 GO:0010038 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0015630 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0035036 GO:0042221 GO:0042802 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044183 GO:0044297 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045935 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051052 GO:0051054 GO:0051082 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051704 GO:0060255 GO:0060341 GO:0061077 GO:0065007 GO:0065008 GO:0070201 GO:0070202 GO:0070203 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0101031 GO:1901998 GO:1903827 GO:1903829 GO:1904356 GO:1904358 GO:1904814 GO:1904816 GO:1904851 GO:1904951 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

266

Amino Acids

28.63

Weight (kDa)

8.21

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11830 AT3G11830
fragaria_vesca	FvH4_3g27240 FvH4_3g27240 FvH4_3g27240 FvH4_3g27240
malus_domestica	MD03G1164100.v1.1
prunus_persica	Prupe.6G154400_v2.0.a1 Prupe.6G154400_v2.0.a1
pyrus_communis	pycom11g15670 pycom12499g00060
rosa_chinensis	RchiOBHm_Chr2g0128841 RchiOBHm_Chr5g0049871
rosa_laevigata	RLG00000019032 RLG00000034659
rosa_multiflora	Rmu_sc0007061.1_g000001 Rmu_sc0008387.1_g000010 Rmu_sc0035081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031490 Rroxscaffold_2G00115180
rosa_rugosa	Rorug02G0281600 Rorug02G0281700 Rorug05G0253500
rosa_samantha	Rh2AG334200 Rh2BG342200 Rh2CG321100 Rh2DG358900 Rh5AG328400 Rh5BG338900 Rh5CG364600 Rh5DG351300
rosa_wichuraiana	Rw2G027020 Rw5G031010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	731
AccII	CGCG	3 cut(s)	249, 397, 494
AciI	CCGC	2 cut(s)	249, 482
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	2 cut(s)	19, 328
AcuI	CTGAAG	2 cut(s)	17, 90
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	170, 333
AjiI	CACGTC	1 cut(s)	776
AjnI	CCWGG	2 cut(s)	343, 711
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	6 cut(s)	68, 92, 257, 278, 446, 761
AluI	AGCT	6 cut(s)	68, 92, 257, 278, 446, 761
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	2 cut(s)	420, 674
Alw44I	GTGCAC	1 cut(s)	543
AoxI	GGCC	1 cut(s)	58
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	7 cut(s)	92, 95, 641, 653, 722, 725, 761
ApoI	RAATTY	2 cut(s)	19, 328
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	697
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	2 cut(s)	547, 712
BanI	GGYRCC	1 cut(s)	731
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	7 cut(s)	79, 82, 628, 640, 709, 712, 748
BccI	CCATC	2 cut(s)	131, 226
BceAI	ACGGC	2 cut(s)	45, 360
BcgI	CGANNNNNNTGC	2 cut(s)	484, 518
BciT130I	CCWGG	2 cut(s)	345, 713
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	420, 674
BfmI	CTRYAG	1 cut(s)	357
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	7 cut(s)	93, 96, 642, 654, 723, 726, 762
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	7 cut(s)	94, 97, 643, 655, 724, 727, 763
Bme1390I	CCNGG	2 cut(s)	345, 713
Bme18I	GGWCC	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	776
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	3 cut(s)	342, 609, 733
BmrFI	CCNGG	2 cut(s)	345, 713
BmsI	GCATC	4 cut(s)	46, 203, 286, 709
BpmI	CTGGAG	1 cut(s)	470
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	403
BsaBI	GATNNNNATC	1 cut(s)	217
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	4 cut(s)	148, 711, 712, 735
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	217
BseBI	CCWGG	2 cut(s)	345, 713
BseDI	CCNNGG	4 cut(s)	148, 711, 712, 735
BseGI	GGATG	2 cut(s)	119, 218
BseJI	GATNNNNATC	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	4 cut(s)	270, 431, 639, 693
BseNI	ACTGG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	771
BseSI	GKGCMC	2 cut(s)	547, 712
BseXI	GCAGC	7 cut(s)	79, 82, 628, 640, 709, 712, 748
BseYI	CCCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	134
Bsh1236I	CGCG	3 cut(s)	249, 397, 494
BshFI	GGCC	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	731
BsiHKAI	GWGCWC	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	570
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	420, 674
BsmBI	CGTCTC	1 cut(s)	674
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	792
BsnI	GGCC	1 cut(s)	60
Bso31I	GGTCTC	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	547, 712
Bsp143I	GATC	5 cut(s)	76, 259, 300, 369, 624
Bsp1720I	GCTNAGC	1 cut(s)	279
Bsp19I	CCATGG	1 cut(s)	735
BspACI	CCGC	2 cut(s)	249, 482
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	4 cut(s)	271, 430, 640, 694
BspFNI	CGCG	3 cut(s)	249, 397, 494
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	342, 609, 733
BspT107I	GGYRCC	1 cut(s)	731
BspTNI	GGTCTC	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	4 cut(s)	148, 711, 712, 735
BssMI	GATC	5 cut(s)	76, 259, 300, 369, 624
BssT1I	CCWWGG	2 cut(s)	148, 735
Bst2UI	CCWGG	2 cut(s)	345, 713
Bst4CI	ACNGT	3 cut(s)	112, 337, 685
BstC8I	GCNNGC	3 cut(s)	58, 612, 658
BstDEI	CTNAG	5 cut(s)	279, 417, 515, 648, 702
BstDSI	CCRYGG	1 cut(s)	735
BstF5I	GGATG	2 cut(s)	119, 218
BstFNI	CGCG	3 cut(s)	249, 397, 494
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	5 cut(s)	79, 262, 303, 372, 627
BstMAI	GTCTC	2 cut(s)	420, 674
BstMBI	GATC	5 cut(s)	76, 259, 300, 369, 624
BstMWI	GCNNNNNNNGC	4 cut(s)	289, 638, 650, 731
BstNI	CCWGG	2 cut(s)	345, 713
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	343, 711
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	2 cut(s)	547, 712
BstUI	CGCG	3 cut(s)	249, 397, 494
BstV1I	GCAGC	7 cut(s)	79, 82, 628, 640, 709, 712, 748
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	735
BtrI	CACGTC	1 cut(s)	776
BtsCI	GGATG	2 cut(s)	119, 218
BtsIMutI	CAGTG	2 cut(s)	106, 108
Cac8I	GCNNGC	3 cut(s)	58, 612, 658
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	145
CseI	GACGC	1 cut(s)	500
CviAII	CATG	4 cut(s)	156, 293, 304, 736
DdeI	CTNAG	5 cut(s)	279, 417, 515, 648, 702
DpnI	GATC	5 cut(s)	78, 261, 302, 371, 626
DpnII	GATC	5 cut(s)	76, 259, 300, 369, 624
DraI	TTTAAA	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	148, 735
Eco31I	GGTCTC	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	145
Eco57I	CTGAAG	2 cut(s)	17, 90
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	343, 711
EcoRV	GATATC	1 cut(s)	29
EcoT14I	CCWWGG	2 cut(s)	148, 735
ErhI	CCWWGG	2 cut(s)	148, 735
Esp3I	CGTCTC	1 cut(s)	674
FaeI	CATG	4 cut(s)	159, 296, 307, 739
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	4 cut(s)	155, 292, 303, 735
FauI	CCCGC	1 cut(s)	475
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	7 cut(s)	93, 96, 642, 654, 723, 726, 762
FokI	GGATG	2 cut(s)	106, 225
Fsp4HI	GCNGC	7 cut(s)	93, 96, 642, 654, 723, 726, 762
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	7 cut(s)	93, 96, 642, 654, 723, 726, 762
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	1 cut(s)	570
HgaI	GACGC	1 cut(s)	500
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	4 cut(s)	159, 296, 307, 739
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HincII	GTYRAC	2 cut(s)	559, 676
HindII	GTYRAC	2 cut(s)	559, 676
HinfI	GANTC	1 cut(s)	584
HpaII	CCGG	1 cut(s)	570
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	4 cut(s)	545, 559, 676, 773
Hpy188I	TCNGA	1 cut(s)	703
Hpy188III	TCNNGA	3 cut(s)	41, 304, 449
Hpy8I	GTNNAC	4 cut(s)	545, 559, 676, 773
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	3 cut(s)	112, 337, 685
HpyCH4IV	ACGT	1 cut(s)	775
HpyCH4V	TGCA	4 cut(s)	82, 115, 292, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	289, 638, 650, 731
HpyF3I	CTNAG	5 cut(s)	279, 417, 515, 648, 702
HpySE526I	ACGT	1 cut(s)	775
Hsp92II	CATG	4 cut(s)	159, 296, 307, 739
HspAI	GCGC	1 cut(s)	395
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	5 cut(s)	76, 259, 300, 369, 624
LmnI	GCTCC	3 cut(s)	254, 607, 758
Lsp1109I	GCAGC	7 cut(s)	79, 82, 628, 640, 709, 712, 748
LweI	GCATC	4 cut(s)	46, 203, 286, 709
MaeII	ACGT	1 cut(s)	775
MaeIII	GTNAC	2 cut(s)	377, 473
MalI	GATC	5 cut(s)	78, 261, 302, 371, 626
MboI	GATC	5 cut(s)	76, 259, 300, 369, 624
MboII	GAAGA	5 cut(s)	23, 83, 86, 182, 236
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	2 cut(s)	547, 712
MluCI	AATT	5 cut(s)	19, 237, 328, 402, 576
MmeI	TCCRAC	1 cut(s)	163
MseI	TTAA	5 cut(s)	11, 198, 323, 564, 668
MslI	CAYNNNNRTG	1 cut(s)	160
MspI	CCGG	1 cut(s)	570
MspR9I	CCNGG	2 cut(s)	345, 713
MunI	CAATTG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	792
MvaI	CCWGG	2 cut(s)	345, 713
MvnI	CGCG	3 cut(s)	249, 397, 494
MwoI	GCNNNNNNNGC	4 cut(s)	289, 638, 650, 731
NcoI	CCATGG	1 cut(s)	735
NdeII	GATC	5 cut(s)	76, 259, 300, 369, 624
NlaIII	CATG	4 cut(s)	159, 296, 307, 739
NlaIV	GGNNCC	3 cut(s)	342, 609, 733
NmuCI	GTSAC	1 cut(s)	473
NspI	RCATGY	1 cut(s)	159
PagI	TCATGA	1 cut(s)	303
PasI	CCCWGGG	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	787
PctI	GAATGC	1 cut(s)	792
PfeI	GAWTC	1 cut(s)	584
PflFI	GACNNNGTC	1 cut(s)	777
PkrI	GCNGC	7 cut(s)	94, 97, 643, 655, 724, 727, 763
PpuMI	RGGWCCY	1 cut(s)	145
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	343, 711
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	343, 711
PspN4I	GGNNCC	3 cut(s)	342, 609, 733
PspPI	GGNCC	1 cut(s)	145
PspPPI	RGGWCCY	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	777
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	5 cut(s)	11, 198, 323, 564, 668
SatI	GCNGC	7 cut(s)	93, 96, 642, 654, 723, 726, 762
Sau3AI	GATC	5 cut(s)	76, 259, 300, 369, 624
Sau96I	GGNCC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	345, 713
SduI	GDGCHC	2 cut(s)	547, 712
SfaNI	GCATC	4 cut(s)	46, 203, 286, 709
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	5 cut(s)	19, 237, 328, 402, 576
SsiI	CCGC	2 cut(s)	249, 482
StyD4I	CCNGG	2 cut(s)	343, 711
StyI	CCWWGG	2 cut(s)	148, 735
TaaI	ACNGT	3 cut(s)	112, 337, 685
TaiI	ACGT	1 cut(s)	778
TaqI	TCGA	2 cut(s)	40, 530
TasI	AATT	5 cut(s)	19, 237, 328, 402, 576
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	5 cut(s)	11, 198, 323, 564, 668
Tru9I	TTAA	5 cut(s)	11, 198, 323, 564, 668
TscAI	CASTG	2 cut(s)	106, 115
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	7 cut(s)	92, 95, 641, 653, 722, 725, 761
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	2 cut(s)	256, 415
TspRI	CASTG	2 cut(s)	106, 115
Tth111I	GACNNNGTC	1 cut(s)	777
VneI	GTGCAC	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	2 cut(s)	19, 328
XceI	RCATGY	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.