Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004167

Physical Location & Seq

Genomic Coordinates Forward (+)

20328462 .. 20334236

Gene Structure 5775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27240.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGGCGGGTATGCTGCAACCGCAGATCATACTTCTGAAGGAGGGAACGGACACCTCTCAAGGGAAGGCGCAGCTCGTCAGCAACATCAACGCCTGCACCGCCGTCGCTGACGTCGTCAGGACCACCCTCGGCCCACGTGGCATGGACAAGCTCATTCACGACGACAAGGGCAATGTCACCATCTCCAACGACGGCGCCACCATCATGAAGCTCCTCGATATTGTTCATCCCGCCGCCAAGATCCTCGTCGACATCGCCAAGTCTCAGGACTCCGAGGTCGGTGATGGAACAACTACAGTTGTTCTGCTTGCAGGCGAGTTCCTCAAGGAGGCCAAACCTTTTGTTGAGGATGGGGTGCACCCGCAGAATTTGATCAGGAGTTATCGGACCGCTAGCTATTTGGCAATTGAGAGAATCAAACAGCTTGCTTCCAGCATCGAGGGGAAGAGTCTCGAAGAGAAGAAGGAGCTACTGGCTAACTGTGCTGCTACAACTCTCTCTTCAAAACTCATCGGGGGAGAGAAGGTGTTCTTTTCAAAAATGGTTGTGGATGCTGTCATTGCGATAGGCGATGAGGATCGTCTTAACATGATTGGTATAAAGAAGGTTGCTGGTGGCAACATGCGTGATTCTTTTCTAGTAAAAGGTGTTGCCTTTAAGAAGACATTTTCTTATGCCGGTTTCGAACAGCAACCAAAAAAGTTTCTTAATCCGAAGATTCTAATACTAAATATTGAATTGGAGCTTAAATCTGAGAAAGAAAATGCTGAGATAAGATTGTCAGACCCATCCCAGTATCAGTCCATTGTTGATGCTGAATGGAATATCATTTATGACAAGCTGGATAAGTGTGTGCAGAGTGGAGCCAGAGTTGTTCTTTCACGGTTGGCTATTGGTGATCTGGCAACTCAGTATTTTGCAGATCGAGATATATTCTGTGCTGGCCGTGTAGCTGAAGAAGATCTGCAAAGGGTAGCTGCAGCCACTGGTGGCACCGTACAGACATCCATCAATGATGTTATTGATGAGGTCCTGGGAACATGTGAGTGTTTTGAAGAAAAGCAAGTTGGAAATGAGAGGTTTAATATCTTTAGTGGATGTCCATCTGGTAGGACTGCTACAATTGTTCTTCGTGGTGGAGCTGATCAGTTCATTGAGGAAGCTGAACGTAGCTTACACGATGCAATCATGATTGTTAGAAGGGCTTTAAAGAATTCAACTGTAGTTCCTGGTGGTGGTGCTATAGATATGGAGCTCAGTCGTTACTTGAGGGACAAAGCGCGTGAAATTGCTGGGAGGTCTCAATTTTTTATCAACTCATACGCAAAAGCTTTGGAGGTTATTCCACGACAACTATGTGACAATGCGGGATTCGATGCGACTGATATGCTAAACAAACTAAGACAGAAACACTCGACAGGTGAGGGTGCACCTTATGGAGTTGACATAAACACAGGAGGAATAGCTGATTCGTATGCCAACTTTGTCTGGGAGCCAGCAGTTGTAAAGATCAATGCTATAAATGCTGCTACTGAGGCTGCTTGCCTTGTTTTAAGTGTCGACGAGACAGTGAAAAATCCAAAGTCTGAGAGTGCCCAGGGAGATGCTGCTGCTAGTGCCATGGGAGGTAGAGGACGTGGAGGTGCTGCTTTTCGTGGTCGTGGGCGTGGAACGCGAAGACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002199 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005856 GO:0005874 GO:0006457 GO:0006458 GO:0006810 GO:0007338 GO:0007339 GO:0008037 GO:0008150 GO:0009566 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009988 GO:0010035 GO:0010038 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0015630 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0035036 GO:0042221 GO:0042802 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044183 GO:0044297 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045935 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051052 GO:0051054 GO:0051082 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051704 GO:0060255 GO:0060341 GO:0061077 GO:0065007 GO:0065008 GO:0070201 GO:0070202 GO:0070203 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0101031 GO:1901998 GO:1903827 GO:1903829 GO:1904356 GO:1904358 GO:1904814 GO:1904816 GO:1904851 GO:1904951 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

562

Amino Acids

60.6

Weight (kDa)

6.13

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	1 - 479	1.3e-156	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11830 AT3G11830
fragaria_vesca	FvH4_3g27240 FvH4_3g27240 FvH4_3g27240 FvH4_3g27240
malus_domestica	MD03G1164100.v1.1
prunus_persica	Prupe.6G154400_v2.0.a1 Prupe.6G154400_v2.0.a1
pyrus_communis	pycom11g15670 pycom12499g00060
rosa_chinensis	RchiOBHm_Chr2g0128841 RchiOBHm_Chr5g0049871
rosa_laevigata	RLG00000019032 RLG00000034659
rosa_multiflora	Rmu_sc0007061.1_g000001 Rmu_sc0008387.1_g000010 Rmu_sc0035081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031490 Rroxscaffold_2G00115180
rosa_rugosa	Rorug02G0281600 Rorug02G0281700 Rorug05G0253500
rosa_samantha	Rh2AG334200 Rh2BG342200 Rh2CG321100 Rh2DG358900 Rh5AG328400 Rh5BG338900 Rh5CG364600 Rh5DG351300
rosa_wichuraiana	Rw2G027020 Rw5G031010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AatII	GACGTC	1 cut(s)	114
AccB1I	GGYRCC	2 cut(s)	194, 992
AccI	GTMKAC	2 cut(s)	249, 1560
AccII	CGCG	2 cut(s)	1282, 1675
AciI	CCGC	8 cut(s)	5, 20, 99, 231, 234, 362, 390, 1367
AclWI	GGATC	2 cut(s)	235, 585
AcoI	YGGCCR	1 cut(s)	943
AcsI	RAATTY	2 cut(s)	367, 1213
AcuI	CTGAAG	2 cut(s)	56, 975
AcvI	CACGTG	1 cut(s)	137
AcyI	GRCGYC	2 cut(s)	111, 195
AfaI	GTAC	1 cut(s)	999
AfiI	CCNNNNNNNGG	3 cut(s)	60, 328, 1235
AflIII	ACRYGT	1 cut(s)	1040
AgsI	TTSAA	5 cut(s)	504, 537, 737, 1055, 1218
AjiI	CACGTC	1 cut(s)	1637
AjnI	CCWGG	3 cut(s)	1032, 1228, 1596
AjuI	GAANNNNNNNTTGG	2 cut(s)	1050, 1082
Alw21I	GWGCWC	3 cut(s)	360, 1257, 1432
Alw26I	GTCTC	4 cut(s)	267, 455, 1305, 1559
Alw44I	GTGCAC	2 cut(s)	356, 1428
AlwI	GGATC	2 cut(s)	235, 585
AlwNI	CAGNNNCTG	1 cut(s)	986
AoxI	GGCC	3 cut(s)	130, 330, 943
ApaLI	GTGCAC	2 cut(s)	356, 1428
ApoI	RAATTY	2 cut(s)	367, 1213
Asp700I	GAANNNNTTC	1 cut(s)	527
AspLEI	GCGC	3 cut(s)	70, 197, 1282
AspS9I	GGNCC	4 cut(s)	120, 131, 387, 1030
AsuHPI	GGTGA	4 cut(s)	169, 293, 908, 1433
AsuII	TTCGAA	1 cut(s)	684
AsuNHI	GCTAGC	1 cut(s)	392
AvaII	GGWCC	3 cut(s)	120, 387, 1030
BaeGI	GKGCMC	3 cut(s)	360, 1432, 1597
BanI	GGYRCC	2 cut(s)	194, 992
BanII	GRGCYC	1 cut(s)	1257
BbrPI	CACGTG	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	3 cut(s)	360, 1257, 1432
BbvI	GCAGC	9 cut(s)	82, 472, 964, 992, 1513, 1525, 1594, 1597, 1633
BccI	CCATC	7 cut(s)	188, 209, 278, 344, 796, 1016, 1111
BceAI	ACGGC	3 cut(s)	86, 208, 930
BcgI	CGANNNNNNTGC	4 cut(s)	85, 119, 1369, 1403
BciT130I	CCWGG	3 cut(s)	1034, 1230, 1598
BclI	TGATCA	2 cut(s)	372, 1144
BcoDI	GTCTC	4 cut(s)	267, 455, 1305, 1559
BfaI	CTAG	3 cut(s)	393, 638, 1614
BfmI	CTRYAG	4 cut(s)	294, 978, 1221, 1242
BfoI	RGCGCY	1 cut(s)	198
BglI	GCCNNNNNGGC	1 cut(s)	138
BglII	AGATCT	1 cut(s)	961
Bme1390I	CCNGG	3 cut(s)	1034, 1230, 1598
Bme18I	GGWCC	3 cut(s)	120, 387, 1030
BmgBI	CACGTC	1 cut(s)	1637
BmgT120I	GGNCC	4 cut(s)	120, 131, 387, 1030
BmiI	GGNNCC	4 cut(s)	196, 865, 994, 1494
BmrFI	CCNGG	3 cut(s)	1034, 1230, 1598
BmrI	ACTGGG	1 cut(s)	787
BmsI	GCATC	6 cut(s)	444, 541, 802, 1171, 1366, 1594
BmtI	GCTAGC	1 cut(s)	396
BmuI	ACTGGG	1 cut(s)	787
BpiI	GAAGAC	1 cut(s)	668
Bpu14I	TTCGAA	1 cut(s)	684
BpuEI	CTTGAG	3 cut(s)	42, 308, 1288
BsaAI	YACGTR	1 cut(s)	137
BsaBI	GATNNNNATC	2 cut(s)	576, 1102
BsaHI	GRCGYC	2 cut(s)	111, 195
BsaI	GGTCTC	1 cut(s)	1305
BsaJI	CCNNGG	6 cut(s)	127, 273, 1033, 1596, 1597, 1620
BsaXI	ACNNNNNCTCC	4 cut(s)	510, 540, 855, 885
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 328, 1235
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	3 cut(s)	477, 793, 991
Bse3DI	GCAATG	2 cut(s)	178, 558
Bse8I	GATNNNNATC	2 cut(s)	576, 1102
BseBI	CCWGG	3 cut(s)	1034, 1230, 1598
BseDI	CCNNGG	6 cut(s)	127, 273, 1033, 1596, 1597, 1620
BseGI	GGATG	6 cut(s)	226, 355, 556, 788, 1004, 1103
BseJI	GATNNNNATC	2 cut(s)	576, 1102
BseLI	CCNNNNNNNGG	3 cut(s)	60, 328, 1235
BseMI	GCAATG	2 cut(s)	178, 558
BseMII	CTCAG	7 cut(s)	278, 744, 759, 923, 1270, 1524, 1578
BseNI	ACTGG	3 cut(s)	477, 793, 991
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	3 cut(s)	360, 1432, 1597
BseXI	GCAGC	9 cut(s)	82, 472, 964, 992, 1513, 1525, 1594, 1597, 1633
BseYI	CCCAGC	1 cut(s)	1292
BsgI	GTGCAG	2 cut(s)	79, 875
Bsh1236I	CGCG	2 cut(s)	1282, 1675
BshFI	GGCC	3 cut(s)	132, 332, 945
BshNI	GGYRCC	2 cut(s)	194, 992
BsiHKAI	GWGCWC	3 cut(s)	360, 1257, 1432
BsiSI	CCGG	1 cut(s)	678
BslFI	GGGAC	1 cut(s)	1286
BslI	CCNNNNNNNGG	3 cut(s)	60, 328, 1235
BsmAI	GTCTC	4 cut(s)	267, 455, 1305, 1559
BsmFI	GGGAC	1 cut(s)	1286
BsnI	GGCC	3 cut(s)	132, 332, 945
Bso31I	GGTCTC	1 cut(s)	1305
Bsp119I	TTCGAA	1 cut(s)	684
Bsp1286I	GDGCHC	4 cut(s)	360, 1257, 1432, 1597
Bsp143I	GATC	9 cut(s)	24, 240, 372, 577, 898, 922, 961, 1144, 1509
Bsp19I	CCATGG	1 cut(s)	1620
BspACI	CCGC	8 cut(s)	5, 20, 99, 231, 234, 362, 390, 1367
BspANI	GGCC	3 cut(s)	132, 332, 945
BspCNI	CTCAG	7 cut(s)	277, 745, 760, 922, 1269, 1525, 1579
BspFNI	CGCG	2 cut(s)	1282, 1675
BspHI	TCATGA	2 cut(s)	204, 1188
BspLI	GGNNCC	4 cut(s)	196, 865, 994, 1494
BspMAI	CTGCAG	1 cut(s)	982
BspOI	GCTAGC	1 cut(s)	396
BspPI	GGATC	2 cut(s)	235, 585
BspT104I	TTCGAA	1 cut(s)	684
BspT107I	GGYRCC	2 cut(s)	194, 992
BspTNI	GGTCTC	1 cut(s)	1305
BsrDI	GCAATG	2 cut(s)	178, 558
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	3 cut(s)	477, 793, 991
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	6 cut(s)	127, 273, 1033, 1596, 1597, 1620
BssMI	GATC	9 cut(s)	24, 240, 372, 577, 898, 922, 961, 1144, 1509
BssNI	GRCGYC	2 cut(s)	111, 195
BssT1I	CCWWGG	1 cut(s)	1620
Bst2UI	CCWGG	3 cut(s)	1034, 1230, 1598
Bst4CI	ACNGT	6 cut(s)	298, 482, 885, 997, 1222, 1570
Bst6I	CTCTTC	3 cut(s)	440, 450, 505
BstACI	GRCGYC	2 cut(s)	111, 195
BstBAI	YACGTR	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	684
BstC8I	GCNNGC	8 cut(s)	94, 309, 313, 394, 426, 943, 1497, 1543
BstDEI	CTNAG	8 cut(s)	264, 753, 768, 909, 1256, 1400, 1533, 1587
BstDSI	CCRYGG	1 cut(s)	1620
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	6 cut(s)	226, 355, 556, 788, 1004, 1103
BstFNI	CGCG	2 cut(s)	1282, 1675
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	3 cut(s)	70, 197, 1282
BstKTI	GATC	9 cut(s)	27, 243, 375, 580, 901, 925, 964, 1147, 1512
BstMAI	GTCTC	4 cut(s)	267, 455, 1305, 1559
BstMBI	GATC	9 cut(s)	24, 240, 372, 577, 898, 922, 961, 1144, 1509
BstMWI	GCNNNNNNNGC	9 cut(s)	19, 98, 138, 482, 560, 1523, 1535, 1616, 1672
BstNI	CCWGG	3 cut(s)	1034, 1230, 1598
BstNSI	RCATGY	2 cut(s)	625, 1044
BstSCI	CCNGG	3 cut(s)	1032, 1228, 1596
BstSFI	CTRYAG	4 cut(s)	294, 978, 1221, 1242
BstSLI	GKGCMC	3 cut(s)	360, 1432, 1597
BstUI	CGCG	2 cut(s)	1282, 1675
BstV1I	GCAGC	9 cut(s)	82, 472, 964, 992, 1513, 1525, 1594, 1597, 1633
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	2 cut(s)	240, 961
BstYI	RGATCY	2 cut(s)	240, 961
BsuRI	GGCC	3 cut(s)	132, 332, 945
BtgI	CCRYGG	1 cut(s)	1620
BtgZI	GCGATG	2 cut(s)	238, 585
BtrI	CACGTC	1 cut(s)	1637
BtsCI	GGATG	6 cut(s)	226, 355, 556, 788, 1004, 1103
BtsIMutI	CAGTG	2 cut(s)	984, 1575
Cac8I	GCNNGC	8 cut(s)	94, 309, 313, 394, 426, 943, 1497, 1543
CaiI	CAGNNNCTG	1 cut(s)	986
CciI	TCATGA	2 cut(s)	204, 1188
CfoI	GCGC	3 cut(s)	70, 197, 1282
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	4 cut(s)	120, 131, 387, 1030
CpoI	CGGWCCG	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	998
CspI	CGGWCCG	1 cut(s)	387
CviAII	CATG	7 cut(s)	142, 205, 589, 622, 1041, 1189, 1621
CviQI	GTAC	1 cut(s)	998
DdeI	CTNAG	8 cut(s)	264, 753, 768, 909, 1256, 1400, 1533, 1587
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	9 cut(s)	26, 242, 374, 579, 900, 924, 963, 1146, 1511
DpnII	GATC	9 cut(s)	24, 240, 372, 577, 898, 922, 961, 1144, 1509
DraI	TTTAAA	1 cut(s)	1209
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
EaeI	YGGCCR	1 cut(s)	943
Eam1104I	CTCTTC	3 cut(s)	440, 450, 505
EarI	CTCTTC	3 cut(s)	440, 450, 505
Ecl136II	GAGCTC	1 cut(s)	1255
Eco130I	CCWWGG	1 cut(s)	1620
Eco24I	GRGCYC	1 cut(s)	1257
Eco31I	GGTCTC	1 cut(s)	1305
Eco47I	GGWCC	3 cut(s)	120, 387, 1030
Eco53kI	GAGCTC	1 cut(s)	1255
Eco57I	CTGAAG	2 cut(s)	56, 975
Eco72I	CACGTG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	1255
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	1030
EcoRI	GAATTC	1 cut(s)	1213
EcoRII	CCWGG	3 cut(s)	1032, 1228, 1596
EcoT14I	CCWWGG	1 cut(s)	1620
EcoT38I	GRGCYC	1 cut(s)	1257
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	1620
FaeI	CATG	7 cut(s)	145, 208, 592, 625, 1044, 1192, 1624
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FaqI	GGGAC	1 cut(s)	1286
FatI	CATG	7 cut(s)	141, 204, 588, 621, 1040, 1188, 1620
FauI	CCCGC	3 cut(s)	238, 369, 1360
FbaI	TGATCA	2 cut(s)	372, 1144
FblI	GTMKAC	2 cut(s)	249, 1560
FokI	GGATG	6 cut(s)	213, 362, 563, 775, 991, 1110
FriOI	GRGCYC	1 cut(s)	1257
FspBI	CTAG	3 cut(s)	393, 638, 1614
GlaI	GCGC	3 cut(s)	69, 196, 1281
GsaI	CCCAGC	1 cut(s)	1296
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	3 cut(s)	132, 332, 945
HapII	CCGG	1 cut(s)	678
HhaI	GCGC	3 cut(s)	70, 197, 1282
Hin1I	GRCGYC	2 cut(s)	111, 195
Hin1II	CATG	7 cut(s)	145, 208, 592, 625, 1044, 1192, 1624
Hin6I	GCGC	3 cut(s)	68, 195, 1280
HinP1I	GCGC	3 cut(s)	68, 195, 1280
HincII	GTYRAC	3 cut(s)	250, 1444, 1561
HindII	GTYRAC	3 cut(s)	250, 1444, 1561
HindIII	AAGCTT	1 cut(s)	1329
HinfI	GANTC	7 cut(s)	269, 414, 448, 629, 718, 1371, 1469
HpaII	CCGG	1 cut(s)	678
HphI	GGTGA	4 cut(s)	169, 293, 908, 1433
Hpy166II	GTNNAC	5 cut(s)	250, 358, 1430, 1444, 1561
Hpy188I	TCNGA	7 cut(s)	36, 274, 387, 714, 754, 784, 1588
Hpy188III	TCNNGA	8 cut(s)	118, 158, 205, 266, 376, 452, 926, 1189
Hpy8I	GTNNAC	5 cut(s)	250, 358, 1430, 1444, 1561
Hpy99I	CGWCG	6 cut(s)	107, 116, 164, 194, 251, 1565
HpyAV	CCTTC	6 cut(s)	31, 58, 457, 517, 598, 1194
HpyCH4III	ACNGT	6 cut(s)	298, 482, 885, 997, 1222, 1570
HpyCH4IV	ACGT	4 cut(s)	111, 136, 1168, 1636
HpyF10VI	GCNNNNNNNGC	9 cut(s)	19, 98, 138, 482, 560, 1523, 1535, 1616, 1672
HpyF3I	CTNAG	8 cut(s)	264, 753, 768, 909, 1256, 1400, 1533, 1587
HpySE526I	ACGT	4 cut(s)	111, 136, 1168, 1636
Hsp92I	GRCGYC	2 cut(s)	111, 195
Hsp92II	CATG	7 cut(s)	145, 208, 592, 625, 1044, 1192, 1624
HspAI	GCGC	3 cut(s)	68, 195, 1280
KasI	GGCGCC	1 cut(s)	194
Ksp22I	TGATCA	2 cut(s)	372, 1144
Kzo9I	GATC	9 cut(s)	24, 240, 372, 577, 898, 922, 961, 1144, 1509
LmnI	GCTCC	7 cut(s)	216, 466, 742, 863, 1139, 1252, 1492
Lsp1109I	GCAGC	9 cut(s)	82, 472, 964, 992, 1513, 1525, 1594, 1597, 1633
LweI	GCATC	6 cut(s)	444, 541, 802, 1171, 1366, 1594
MaeI	CTAG	3 cut(s)	393, 638, 1614
MaeII	ACGT	4 cut(s)	111, 136, 1168, 1636
MaeIII	GTNAC	3 cut(s)	175, 1262, 1358
MalI	GATC	9 cut(s)	26, 242, 374, 579, 900, 924, 963, 1146, 1511
MboI	GATC	9 cut(s)	24, 240, 372, 577, 898, 922, 961, 1144, 1509
MfeI	CAATTG	2 cut(s)	405, 1122
MflI	RGATCY	2 cut(s)	240, 961
MhlI	GDGCHC	4 cut(s)	360, 1257, 1432, 1597
MluCI	AATT	7 cut(s)	367, 405, 737, 1122, 1213, 1287, 1304
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	263, 457
MmeI	TCCRAC	2 cut(s)	210, 1048
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	7 cut(s)	585, 657, 708, 747, 1083, 1208, 1553
MslI	CAYNNNNRTG	2 cut(s)	203, 1045
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	3 cut(s)	1034, 1230, 1598
MunI	CAATTG	2 cut(s)	405, 1122
MvaI	CCWGG	3 cut(s)	1034, 1230, 1598
MvnI	CGCG	2 cut(s)	1282, 1675
MwoI	GCNNNNNNNGC	9 cut(s)	19, 98, 138, 482, 560, 1523, 1535, 1616, 1672
NarI	GGCGCC	1 cut(s)	195
NcoI	CCATGG	1 cut(s)	1620
NdeII	GATC	9 cut(s)	24, 240, 372, 577, 898, 922, 961, 1144, 1509
NheI	GCTAGC	1 cut(s)	392
NlaIII	CATG	7 cut(s)	145, 208, 592, 625, 1044, 1192, 1624
NlaIV	GGNNCC	4 cut(s)	196, 865, 994, 1494
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	2 cut(s)	175, 1358
NspI	RCATGY	2 cut(s)	625, 1044
NspV	TTCGAA	1 cut(s)	684
PagI	TCATGA	2 cut(s)	204, 1188
PasI	CCCWGGG	1 cut(s)	1597
PciI	ACATGT	1 cut(s)	1040
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	5 cut(s)	414, 629, 718, 1371, 1469
PflFI	GACNNNGTC	1 cut(s)	113
PleI	GAGTC	2 cut(s)	263, 456
PluTI	GGCGCC	1 cut(s)	198
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
PpsI	GAGTC	2 cut(s)	263, 456
Ppu21I	YACGTR	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	1030
PscI	ACATGT	1 cut(s)	1040
Psp124BI	GAGCTC	1 cut(s)	1257
Psp5II	RGGWCCY	1 cut(s)	1030
Psp6I	CCWGG	3 cut(s)	1032, 1228, 1596
PspCI	CACGTG	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	1292
PspGI	CCWGG	3 cut(s)	1032, 1228, 1596
PspN4I	GGNNCC	4 cut(s)	196, 865, 994, 1494
PspPI	GGNCC	4 cut(s)	120, 131, 387, 1030
PspPPI	RGGWCCY	1 cut(s)	1030
PsrI	GAACNNNNNNTAC	2 cut(s)	1158, 1190
PstI	CTGCAG	1 cut(s)	982
PstNI	CAGNNNCTG	1 cut(s)	986
PsuI	RGATCY	2 cut(s)	240, 961
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	999
RsaNI	GTAC	1 cut(s)	998
RseI	CAYNNNNRTG	2 cut(s)	203, 1045
Rsr2I	CGGWCCG	1 cut(s)	387
RsrII	CGGWCCG	1 cut(s)	387
SacI	GAGCTC	1 cut(s)	1257
SalI	GTCGAC	2 cut(s)	248, 1559
SaqAI	TTAA	7 cut(s)	585, 657, 708, 747, 1083, 1208, 1553
Sau3AI	GATC	9 cut(s)	24, 240, 372, 577, 898, 922, 961, 1144, 1509
Sau96I	GGNCC	4 cut(s)	120, 131, 387, 1030
SchI	GAGTC	2 cut(s)	263, 457
ScrFI	CCNGG	3 cut(s)	1034, 1230, 1598
SduI	GDGCHC	4 cut(s)	360, 1257, 1432, 1597
SfaNI	GCATC	6 cut(s)	444, 541, 802, 1171, 1366, 1594
SfcI	CTRYAG	4 cut(s)	294, 978, 1221, 1242
SfoI	GGCGCC	1 cut(s)	196
SfuI	TTCGAA	1 cut(s)	684
SinI	GGWCC	3 cut(s)	120, 387, 1030
SmiMI	CAYNNNNRTG	2 cut(s)	203, 1045
SmlI	CTYRAG	3 cut(s)	57, 323, 1267
SmoI	CTYRAG	3 cut(s)	57, 323, 1267
Sse9I	AATT	7 cut(s)	367, 405, 737, 1122, 1213, 1287, 1304
SsiI	CCGC	8 cut(s)	5, 20, 99, 231, 234, 362, 390, 1367
SspDI	GGCGCC	1 cut(s)	194
SspI	AATATT	1 cut(s)	733
SspMI	CTAG	3 cut(s)	393, 638, 1614
SstI	GAGCTC	1 cut(s)	1257
StyD4I	CCNGG	3 cut(s)	1032, 1228, 1596
StyI	CCWWGG	1 cut(s)	1620
TaaI	ACNGT	6 cut(s)	298, 482, 885, 997, 1222, 1570
TaiI	ACGT	4 cut(s)	114, 139, 1171, 1639
TaqI	TCGA	9 cut(s)	216, 249, 438, 453, 684, 925, 1374, 1415, 1560
TasI	AATT	7 cut(s)	367, 405, 737, 1122, 1213, 1287, 1304
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	5 cut(s)	414, 629, 718, 1371, 1469
Tru1I	TTAA	7 cut(s)	585, 657, 708, 747, 1083, 1208, 1553
Tru9I	TTAA	7 cut(s)	585, 657, 708, 747, 1083, 1208, 1553
TscAI	CASTG	2 cut(s)	991, 1575
TseFI	GTSAC	2 cut(s)	175, 1358
Tsp45I	GTSAC	2 cut(s)	175, 1358
TspDTI	ATGAA	3 cut(s)	215, 221, 1141
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	2 cut(s)	991, 1575
Tth111I	GACNNNGTC	1 cut(s)	113
VneI	GTGCAC	2 cut(s)	356, 1428
VpaK11BI	GGWCC	3 cut(s)	120, 387, 1030
XagI	CCTNNNNNAGG	1 cut(s)	326
XapI	RAATTY	2 cut(s)	367, 1213
XceI	RCATGY	2 cut(s)	625, 1044
XmiI	GTMKAC	2 cut(s)	249, 1560
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	3 cut(s)	393, 638, 1614
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.