Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004167

Physical Location & Seq

Genomic Coordinates Forward (+)

21238413 .. 21246530

Gene Structure 8118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1164100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

ATGTCATCCATGCTGCAACCACAGATCATACTGTTGAAGGAGGGTACGGATACATCGCAAGGGAAGGCGCAGCTGGTGAGCAATATAAACGCCTGCACGGCGGTGGCCGATGTGGTGAGGACCACGCTGGGCCCTAGGGGCATGGACAAGCTCATTCACGACGACAAGGGTAGTGTTACTATTTCCAACGATGGCGCCACCATCATGAAGTTGCTTGATATTGTTCACCCCGCCGCAAAGATCCTTGTTGACATCGCCAAGTCTCAGGACTCTGAGGTTGGTGATGGAACCACAACAGTTGTTCTGCTTGCAGGGGAGTTTTTGAAGGAGGCCAAGCCTTTCATAGAGGATGGGGTGCACCCACAAAGTTTGATAAAAAGTTATCGGACTGCTAGCTATTTGGCAATTGAGAAAATCAAAGAACTTGCTGTAAACATAGAGGGCAAAAGCCTTGAAGAGAAGAAAAACCTGCTAGGTAAATGTGCAGCTACAACACTTTCTTCAAAACTCATTGGTGGAGAAAAGGAGTTTTTTGCATCAATGGTCGTGGATGCTGTCATTGCAATTGGTGATGAAGATCGTCTCAACATGATTGGAATAAAGAAGGTTTCTGGGGGCAACATGCGTGACTCCTTTTTAGTAAATGGTGTTGCCTTCAAGAAGACATTTTCATATGCTGGGTTTGAACAACAACCAAAGAAGTTTCTTAATTCCAAGATACTTCTACTGAACATTGAATTGGAACTAAAATCTGAGAAAGAAAATGCTGAGATAAGATTGTCAGATCCATCCCAGTATCAGTCCATTGTTGATGCAGAATGGAATATTATTTATGACAAGTTGGATAAGTGTGTGCAGAGTGGGGCCAAGGTTGTTCTTTCACGGCTGGCTATTGGTGATCTAGCAACACAGTATTTTGCAGATAGAGATATATTCTGTGCTGGACGTGTAACTGAAGAAGATCTGCATCGGGTAGCTGCTGCCACTGGCGGGACTGTGCAAACATCCATCAACAATGTCATTGAAGAGGTTCTTGGAACGTGCGAGTGTTTTGAGGAAAGGCAAGTTGGAAATGAGAGGTTTAATATATTTAGTGGATGTCCATCAGGTAGGACAGCTACAATTGTTCTTCGTGGTGGAGCTGATCAGTTCATTGAGGAAGCTGAGCGGAGTTTACATGATGCTATTATGATTGTCAGAAGAGCGCTAAAGAATTCAACTGTAGTTGCTGGTGGTGGTGCTATAGATATGGAAATCAGCCGGTACTTGCGGCAGAAAGCACATGAAATCAGGGGGAAGTCTCAGTTTTTCATTAACTCATATGCAAAAGCTCTTGAGGTTATCCCACGACAACTGTGTGATAATGCAGGATTTGATGCGACTGATGTGCTAAACAAACTTAGACAGAAACACGCGCATCCATCTGGCGAGGGTGCACTTCATGGAGTTGACATCAACACAGGTGGAATTGCGGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAGTTGTGAAGATCAATGCTATAAATGCTGCTACCGAGGCTGCTTGCCTTGTTTTAAGTGTCGACGAGACAGTTAAAAACCCAAAGTCCGAGAGTGCACAGGGAGAAGCTGCTGCAAGTGCCATGGGAGGTCGAGGGCGTGGAGGTGGTCGTGGGCGGGGGATGCGAAGACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002199 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005856 GO:0005874 GO:0006457 GO:0006458 GO:0006810 GO:0007338 GO:0007339 GO:0008037 GO:0008150 GO:0009566 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009988 GO:0010035 GO:0010038 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0015630 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0035036 GO:0042221 GO:0042802 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044183 GO:0044297 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045935 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051052 GO:0051054 GO:0051082 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051704 GO:0060255 GO:0060341 GO:0061077 GO:0065007 GO:0065008 GO:0070201 GO:0070202 GO:0070203 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0101031 GO:1901998 GO:1903827 GO:1903829 GO:1904356 GO:1904358 GO:1904814 GO:1904816 GO:1904851 GO:1904951 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

560

Amino Acids

60.37

Weight (kDa)

6.22

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	35 - 528	2.9e-163	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11830 AT3G11830
fragaria_vesca	FvH4_3g27240 FvH4_3g27240 FvH4_3g27240 FvH4_3g27240
malus_domestica	MD03G1164100.v1.1
prunus_persica	Prupe.6G154400_v2.0.a1 Prupe.6G154400_v2.0.a1
pyrus_communis	pycom11g15670 pycom12499g00060
rosa_chinensis	RchiOBHm_Chr2g0128841 RchiOBHm_Chr5g0049871
rosa_laevigata	RLG00000019032 RLG00000034659
rosa_multiflora	Rmu_sc0007061.1_g000001 Rmu_sc0008387.1_g000010 Rmu_sc0035081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031490 Rroxscaffold_2G00115180
rosa_rugosa	Rorug02G0281600 Rorug02G0281700 Rorug05G0253500
rosa_samantha	Rh2AG334200 Rh2BG342200 Rh2CG321100 Rh2DG358900 Rh5AG328400 Rh5BG338900 Rh5CG364600 Rh5DG351300
rosa_wichuraiana	Rw2G027020 Rw5G031010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	477
AccB1I	GGYRCC	1 cut(s)	194
AccBSI	CCGCTC	1 cut(s)	1168
AccI	GTMKAC	1 cut(s)	1566
AccII	CGCG	1 cut(s)	1415
AciI	CCGC	8 cut(s)	101, 231, 234, 990, 1168, 1270, 1472, 1660
AclWI	GGATC	2 cut(s)	235, 779
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	1213
AcuI	CTGAAG	1 cut(s)	975
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	2 cut(s)	46, 1265
AfeI	AGCGCT	1 cut(s)	1206
AfiI	CCNNNNNNNGG	1 cut(s)	990
AflIII	ACRYGT	1 cut(s)	946
AgsI	TTSAA	9 cut(s)	37, 325, 455, 504, 658, 686, 737, 1025, 1218
AjiI	CACGTC	1 cut(s)	947
AjuI	GAANNNNNNNTTGG	6 cut(s)	722, 754, 1017, 1049, 1050, 1082
AleI	CACNNNNGTG	1 cut(s)	101
Alw21I	GWGCWC	3 cut(s)	360, 1438, 1603
Alw26I	GTCTC	4 cut(s)	267, 587, 1305, 1565
Alw44I	GTGCAC	3 cut(s)	356, 1434, 1599
AlwI	GGATC	2 cut(s)	235, 779
Aor51HI	AGCGCT	1 cut(s)	1206
AoxI	GGCC	4 cut(s)	105, 130, 330, 864
ApaI	GGGCCC	1 cut(s)	134
ApaLI	GTGCAC	3 cut(s)	356, 1434, 1599
ApeKI	GCWGC	9 cut(s)	13, 70, 485, 977, 980, 1532, 1544, 1613, 1616
ApoI	RAATTY	1 cut(s)	1213
Asp700I	GAANNNNTTC	1 cut(s)	1029
AspA2I	CCTAGG	1 cut(s)	134
AspLEI	GCGC	4 cut(s)	70, 197, 1207, 1417
AspS9I	GGNCC	4 cut(s)	120, 130, 131, 864
AsuHPI	GGTGA	6 cut(s)	88, 127, 218, 293, 581, 908
AsuNHI	GCTAGC	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	120
AvrII	CCTAGG	1 cut(s)	134
BaeGI	GKGCMC	4 cut(s)	134, 360, 1438, 1603
BanI	GGYRCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	3 cut(s)	360, 1438, 1603
BbvI	GCAGC	8 cut(s)	82, 497, 964, 967, 1519, 1531, 1600, 1603
BccI	CCATC	8 cut(s)	185, 209, 278, 344, 796, 1016, 1111, 1429
BceAI	ACGGC	2 cut(s)	114, 899
BcgI	CGANNNNNNTGC	2 cut(s)	1369, 1403
BciVI	GTATCC	1 cut(s)	43
BclI	TGATCA	1 cut(s)	1144
BcoDI	GTCTC	4 cut(s)	267, 587, 1305, 1565
BfaI	CTAG	4 cut(s)	135, 393, 473, 902
BfmI	CTRYAG	2 cut(s)	1221, 1242
BfoI	RGCGCY	2 cut(s)	198, 1208
BfuAI	ACCTGC	1 cut(s)	477
BfuI	GTATCC	1 cut(s)	43
BglI	GCCNNNNNGGC	2 cut(s)	98, 138
BglII	AGATCT	1 cut(s)	961
BlnI	CCTAGG	1 cut(s)	134
BlpI	GCTNAGC	1 cut(s)	1164
Bme18I	GGWCC	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	947
BmgT120I	GGNCC	4 cut(s)	120, 130, 131, 864
BmiI	GGNNCC	5 cut(s)	132, 196, 289, 865, 1500
BmrI	ACTGGG	1 cut(s)	787
BmsI	GCATC	8 cut(s)	541, 545, 802, 976, 1171, 1366, 1426, 1656
BmtI	GCTAGC	1 cut(s)	396
BmuI	ACTGGG	1 cut(s)	787
BpiI	GAAGAC	1 cut(s)	668
Bpu1102I	GCTNAGC	1 cut(s)	1164
BpuEI	CTTGAG	1 cut(s)	1355
BsaBI	GATNNNNATC	3 cut(s)	576, 966, 1102
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	134, 867, 1539, 1626
Bsc4I	CCNNNNNNNGG	1 cut(s)	990
Bse118I	RCCGGY	1 cut(s)	1260
Bse1I	ACTGG	2 cut(s)	793, 991
Bse3DI	GCAATG	1 cut(s)	558
Bse8I	GATNNNNATC	3 cut(s)	576, 966, 1102
BseDI	CCNNGG	4 cut(s)	134, 867, 1539, 1626
BseGI	GGATG	8 cut(s)	5, 355, 556, 788, 1004, 1103, 1417, 1671
BseJI	GATNNNNATC	3 cut(s)	576, 966, 1102
BseLI	CCNNNNNNNGG	1 cut(s)	990
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	6 cut(s)	264, 278, 744, 759, 1155, 1316
BseNI	ACTGG	2 cut(s)	793, 991
BseSI	GKGCMC	4 cut(s)	134, 360, 1438, 1603
BseXI	GCAGC	8 cut(s)	82, 497, 964, 967, 1519, 1531, 1600, 1603
BseYI	CCCAGC	2 cut(s)	127, 677
BsgI	GTGCAG	3 cut(s)	79, 504, 875
Bsh1236I	CGCG	1 cut(s)	1415
BshFI	GGCC	4 cut(s)	107, 132, 332, 866
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	3 cut(s)	360, 1438, 1603
BsiSI	CCGG	1 cut(s)	1261
BslFI	GGGAC	1 cut(s)	1006
BslI	CCNNNNNNNGG	1 cut(s)	990
BsmAI	GTCTC	4 cut(s)	267, 587, 1305, 1565
BsmBI	CGTCTC	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	1006
BsnI	GGCC	4 cut(s)	107, 132, 332, 866
Bsp120I	GGGCCC	1 cut(s)	130
Bsp1286I	GDGCHC	4 cut(s)	134, 360, 1438, 1603
Bsp143I	GATC	8 cut(s)	24, 240, 577, 784, 898, 961, 1144, 1515
Bsp1720I	GCTNAGC	1 cut(s)	1164
Bsp19I	CCATGG	1 cut(s)	1626
BspACI	CCGC	8 cut(s)	101, 231, 234, 990, 1168, 1270, 1472, 1660
BspANI	GGCC	4 cut(s)	107, 132, 332, 866
BspCNI	CTCAG	6 cut(s)	265, 277, 745, 760, 1156, 1315
BspFNI	CGCG	1 cut(s)	1415
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	5 cut(s)	132, 196, 289, 865, 1500
BspMI	ACCTGC	1 cut(s)	477
BspOI	GCTAGC	1 cut(s)	396
BspPI	GGATC	2 cut(s)	235, 779
BspQI	GCTCTTC	1 cut(s)	1195
BspT107I	GGYRCC	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	1168
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	1260
BsrI	ACTGG	2 cut(s)	793, 991
BssAI	RCCGGY	1 cut(s)	1260
BssECI	CCNNGG	4 cut(s)	134, 867, 1539, 1626
BssMI	GATC	8 cut(s)	24, 240, 577, 784, 898, 961, 1144, 1515
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	3 cut(s)	134, 867, 1626
Bst4CI	ACNGT	8 cut(s)	33, 298, 912, 997, 1222, 1356, 1576, 1677
Bst6I	CTCTTC	3 cut(s)	450, 1020, 1195
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	6 cut(s)	94, 309, 394, 888, 1503, 1549
BstDEI	CTNAG	7 cut(s)	264, 273, 753, 768, 1164, 1302, 1400
BstDSI	CCRYGG	1 cut(s)	1626
BstF5I	GGATG	8 cut(s)	5, 355, 556, 788, 1004, 1103, 1417, 1671
BstFNI	CGCG	1 cut(s)	1415
BstH2I	RGCGCY	2 cut(s)	198, 1208
BstHHI	GCGC	4 cut(s)	70, 197, 1207, 1417
BstKTI	GATC	8 cut(s)	27, 243, 580, 787, 901, 964, 1147, 1518
BstMAI	GTCTC	4 cut(s)	267, 587, 1305, 1565
BstMBI	GATC	8 cut(s)	24, 240, 577, 784, 898, 961, 1144, 1515
BstMWI	GCNNNNNNNGC	7 cut(s)	98, 138, 560, 1529, 1541, 1622, 1666
BstNSI	RCATGY	1 cut(s)	625
BstSFI	CTRYAG	2 cut(s)	1221, 1242
BstSLI	GKGCMC	4 cut(s)	134, 360, 1438, 1603
BstUI	CGCG	1 cut(s)	1415
BstV1I	GCAGC	8 cut(s)	82, 497, 964, 967, 1519, 1531, 1600, 1603
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	3 cut(s)	240, 784, 961
BstYI	RGATCY	3 cut(s)	240, 784, 961
BsuI	GTATCC	1 cut(s)	43
BsuRI	GGCC	4 cut(s)	107, 132, 332, 866
BtgI	CCRYGG	1 cut(s)	1626
BtgZI	GCGATG	2 cut(s)	39, 238
BtrI	CACGTC	1 cut(s)	947
BtsCI	GGATG	8 cut(s)	5, 355, 556, 788, 1004, 1103, 1417, 1671
BtsIMutI	CAGTG	1 cut(s)	984
BveI	ACCTGC	1 cut(s)	477
Cac8I	GCNNGC	6 cut(s)	94, 309, 394, 888, 1503, 1549
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	4 cut(s)	70, 197, 1207, 1417
Cfr10I	RCCGGY	1 cut(s)	1260
Cfr13I	GGNCC	4 cut(s)	120, 130, 131, 864
Csp6I	GTAC	2 cut(s)	45, 1264
CspCI	CAANNNNNGTGG	8 cut(s)	280, 315, 351, 386, 528, 563, 1444, 1479
CviAII	CATG	9 cut(s)	10, 142, 205, 589, 622, 1178, 1283, 1442, 1627
CviQI	GTAC	2 cut(s)	45, 1264
DdeI	CTNAG	7 cut(s)	264, 273, 753, 768, 1164, 1302, 1400
DinI	GGCGCC	1 cut(s)	196
DpnI	GATC	8 cut(s)	26, 242, 579, 786, 900, 963, 1146, 1517
DpnII	GATC	8 cut(s)	24, 240, 577, 784, 898, 961, 1144, 1515
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	3 cut(s)	450, 1020, 1195
EarI	CTCTTC	3 cut(s)	450, 1020, 1195
Eco130I	CCWWGG	3 cut(s)	134, 867, 1626
Eco24I	GRGCYC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	120
Eco47III	AGCGCT	1 cut(s)	1206
Eco57I	CTGAAG	1 cut(s)	975
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	1213
EcoT14I	CCWWGG	3 cut(s)	134, 867, 1626
EcoT38I	GRGCYC	1 cut(s)	134
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
ErhI	CCWWGG	3 cut(s)	134, 867, 1626
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	9 cut(s)	13, 145, 208, 592, 625, 1181, 1286, 1445, 1630
FalI	AAGNNNNNCTT	2 cut(s)	1017, 1049
FaqI	GGGAC	1 cut(s)	1006
FatI	CATG	9 cut(s)	9, 141, 204, 588, 621, 1177, 1282, 1441, 1626
FauI	CCCGC	3 cut(s)	238, 983, 1653
FauNDI	CATATG	2 cut(s)	673, 1321
FbaI	TGATCA	1 cut(s)	1144
FblI	GTMKAC	1 cut(s)	1566
FokI	GGATG	6 cut(s)	362, 563, 775, 991, 1110, 1404
FriOI	GRGCYC	1 cut(s)	134
FspBI	CTAG	4 cut(s)	135, 393, 473, 902
GlaI	GCGC	4 cut(s)	69, 196, 1206, 1416
GsaI	CCCAGC	2 cut(s)	131, 681
HaeII	RGCGCY	2 cut(s)	198, 1208
HaeIII	GGCC	4 cut(s)	107, 132, 332, 866
HapII	CCGG	1 cut(s)	1261
HhaI	GCGC	4 cut(s)	70, 197, 1207, 1417
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	9 cut(s)	13, 145, 208, 592, 625, 1181, 1286, 1445, 1630
Hin6I	GCGC	4 cut(s)	68, 195, 1205, 1415
HinP1I	GCGC	4 cut(s)	68, 195, 1205, 1415
HincII	GTYRAC	3 cut(s)	250, 1450, 1567
HindII	GTYRAC	3 cut(s)	250, 1450, 1567
HinfI	GANTC	3 cut(s)	269, 629, 1475
HpaII	CCGG	1 cut(s)	1261
HphI	GGTGA	6 cut(s)	88, 127, 218, 293, 581, 908
Hpy166II	GTNNAC	9 cut(s)	226, 250, 358, 433, 1175, 1436, 1450, 1567, 1601
Hpy188I	TCNGA	6 cut(s)	274, 387, 754, 784, 1199, 1594
Hpy188III	TCNNGA	5 cut(s)	158, 205, 266, 658, 1334
Hpy8I	GTNNAC	9 cut(s)	226, 250, 358, 433, 1175, 1436, 1450, 1567, 1601
Hpy99I	CGWCG	2 cut(s)	164, 1571
HpyAV	CCTTC	5 cut(s)	31, 58, 319, 598, 664
HpyCH4III	ACNGT	8 cut(s)	33, 298, 912, 997, 1222, 1356, 1576, 1677
HpyCH4IV	ACGT	2 cut(s)	946, 1040
HpyF10VI	GCNNNNNNNGC	7 cut(s)	98, 138, 560, 1529, 1541, 1622, 1666
HpyF3I	CTNAG	7 cut(s)	264, 273, 753, 768, 1164, 1302, 1400
HpySE526I	ACGT	2 cut(s)	946, 1040
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	9 cut(s)	13, 145, 208, 592, 625, 1181, 1286, 1445, 1630
HspAI	GCGC	4 cut(s)	68, 195, 1205, 1415
KasI	GGCGCC	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	1144
Kzo9I	GATC	8 cut(s)	24, 240, 577, 784, 898, 961, 1144, 1515
LguI	GCTCTTC	1 cut(s)	1195
LmnI	GCTCC	2 cut(s)	1139, 1498
Lsp1109I	GCAGC	8 cut(s)	82, 497, 964, 967, 1519, 1531, 1600, 1603
LweI	GCATC	8 cut(s)	541, 545, 802, 976, 1171, 1366, 1426, 1656
MaeI	CTAG	4 cut(s)	135, 393, 473, 902
MaeII	ACGT	2 cut(s)	946, 1040
MaeIII	GTNAC	3 cut(s)	175, 626, 949
MalI	GATC	8 cut(s)	26, 242, 579, 786, 900, 963, 1146, 1517
MbiI	CCGCTC	1 cut(s)	1168
MboI	GATC	8 cut(s)	24, 240, 577, 784, 898, 961, 1144, 1515
MfeI	CAATTG	3 cut(s)	405, 564, 1122
MflI	RGATCY	3 cut(s)	240, 784, 961
MhlI	GDGCHC	4 cut(s)	134, 360, 1438, 1603
MluCI	AATT	7 cut(s)	405, 564, 709, 737, 1122, 1213, 1467
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	263, 623
MmeI	TCCRAC	3 cut(s)	210, 822, 1048
MroXI	GAANNNNTTC	1 cut(s)	1029
MseI	TTAA	5 cut(s)	708, 1083, 1314, 1559, 1578
MslI	CAYNNNNRTG	2 cut(s)	101, 203
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	1 cut(s)	1261
MunI	CAATTG	3 cut(s)	405, 564, 1122
MvnI	CGCG	1 cut(s)	1415
MwoI	GCNNNNNNNGC	7 cut(s)	98, 138, 560, 1529, 1541, 1622, 1666
NarI	GGCGCC	1 cut(s)	195
NcoI	CCATGG	1 cut(s)	1626
NdeI	CATATG	2 cut(s)	673, 1321
NdeII	GATC	8 cut(s)	24, 240, 577, 784, 898, 961, 1144, 1515
NheI	GCTAGC	1 cut(s)	392
NlaIII	CATG	9 cut(s)	13, 145, 208, 592, 625, 1181, 1286, 1445, 1630
NlaIV	GGNNCC	5 cut(s)	132, 196, 289, 865, 1500
NmuCI	GTSAC	1 cut(s)	626
NspI	RCATGY	1 cut(s)	625
OliI	CACNNNNGTG	1 cut(s)	101
PagI	TCATGA	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	1195
PdmI	GAANNNNTTC	1 cut(s)	1029
PfeI	GAWTC	1 cut(s)	1475
PleI	GAGTC	2 cut(s)	263, 623
PluTI	GGCGCC	1 cut(s)	198
PpsI	GAGTC	2 cut(s)	263, 623
PspFI	CCCAGC	2 cut(s)	127, 677
PspN4I	GGNNCC	5 cut(s)	132, 196, 289, 865, 1500
PspOMI	GGGCCC	1 cut(s)	130
PspPI	GGNCC	4 cut(s)	120, 130, 131, 864
PsuI	RGATCY	3 cut(s)	240, 784, 961
PvuII	CAGCTG	1 cut(s)	73
RsaI	GTAC	2 cut(s)	46, 1265
RsaNI	GTAC	2 cut(s)	45, 1264
RseI	CAYNNNNRTG	2 cut(s)	101, 203
SalI	GTCGAC	1 cut(s)	1565
SapI	GCTCTTC	1 cut(s)	1195
SaqAI	TTAA	5 cut(s)	708, 1083, 1314, 1559, 1578
Sau3AI	GATC	8 cut(s)	24, 240, 577, 784, 898, 961, 1144, 1515
Sau96I	GGNCC	4 cut(s)	120, 130, 131, 864
SchI	GAGTC	2 cut(s)	263, 623
SduI	GDGCHC	4 cut(s)	134, 360, 1438, 1603
SfaNI	GCATC	8 cut(s)	541, 545, 802, 976, 1171, 1366, 1426, 1656
SfcI	CTRYAG	2 cut(s)	1221, 1242
SfoI	GGCGCC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	2 cut(s)	101, 203
SmlI	CTYRAG	1 cut(s)	1334
SmoI	CTYRAG	1 cut(s)	1334
Sse9I	AATT	7 cut(s)	405, 564, 709, 737, 1122, 1213, 1467
SsiI	CCGC	8 cut(s)	101, 231, 234, 990, 1168, 1270, 1472, 1660
SspDI	GGCGCC	1 cut(s)	194
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	4 cut(s)	135, 393, 473, 902
StyI	CCWWGG	3 cut(s)	134, 867, 1626
TaaI	ACNGT	8 cut(s)	33, 298, 912, 997, 1222, 1356, 1576, 1677
TaiI	ACGT	2 cut(s)	949, 1043
TaqI	TCGA	2 cut(s)	1566, 1636
TasI	AATT	7 cut(s)	405, 564, 709, 737, 1122, 1213, 1467
TauI	GCSGC	2 cut(s)	236, 1273
TfiI	GAWTC	1 cut(s)	1475
Tru1I	TTAA	5 cut(s)	708, 1083, 1314, 1559, 1578
Tru9I	TTAA	5 cut(s)	708, 1083, 1314, 1559, 1578
TscAI	CASTG	1 cut(s)	991
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	9 cut(s)	13, 70, 485, 977, 980, 1532, 1544, 1613, 1616
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	9 cut(s)	221, 331, 588, 660, 1141, 1299, 1300, 1430, 1467
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	991
VneI	GTGCAC	3 cut(s)	356, 1434, 1599
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	1213
XceI	RCATGY	1 cut(s)	625
XmaJI	CCTAGG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	1566
XmnI	GAANNNNTTC	1 cut(s)	1029
XspI	CTAG	4 cut(s)	135, 393, 473, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.