Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004167

Physical Location & Seq

Genomic Coordinates Reverse (-)

30379096 .. 30379548

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0281700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGTGCCTCCTGCGTGACTGCAGCGTCTACGAATGCCCGGAAAATGAATTTTCGAAACCTTTCAAGAGGCCCTTTCACCGTGGCCTTCCATCCGACAGTTTGGTTTGTCAAGATGACAAGCTGCAGGGTTGTGTTGACCGCACTCTAGACAGTAGGGCTTTCAGAGGCTGGATTGAGACAGATAACCCTTGGACAAATGATGACGAGACTAATAATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002199 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005856 GO:0005874 GO:0006457 GO:0006458 GO:0006810 GO:0007338 GO:0007339 GO:0008037 GO:0008150 GO:0009566 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009988 GO:0010035 GO:0010038 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0015630 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0035036 GO:0042221 GO:0042802 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044183 GO:0044297 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045935 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051052 GO:0051054 GO:0051082 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051704 GO:0060255 GO:0060341 GO:0061077 GO:0065007 GO:0065008 GO:0070201 GO:0070202 GO:0070203 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0101031 GO:1901998 GO:1903827 GO:1903829 GO:1904356 GO:1904358 GO:1904814 GO:1904816 GO:1904851 GO:1904951 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

73

Amino Acids

8.47

Weight (kDa)

4.61

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11830 AT3G11830
fragaria_vesca	FvH4_3g27240 FvH4_3g27240 FvH4_3g27240 FvH4_3g27240
malus_domestica	MD03G1164100.v1.1
prunus_persica	Prupe.6G154400_v2.0.a1 Prupe.6G154400_v2.0.a1
pyrus_communis	pycom11g15670 pycom12499g00060
rosa_chinensis	RchiOBHm_Chr2g0128841 RchiOBHm_Chr5g0049871
rosa_laevigata	RLG00000019032 RLG00000034659
rosa_multiflora	Rmu_sc0007061.1_g000001 Rmu_sc0008387.1_g000010 Rmu_sc0035081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031490 Rroxscaffold_2G00115180
rosa_rugosa	Rorug02G0281600 Rorug02G0281700 Rorug05G0253500
rosa_samantha	Rh2AG334200 Rh2BG342200 Rh2CG321100 Rh2DG358900 Rh5AG328400 Rh5BG338900 Rh5CG364600 Rh5DG351300
rosa_wichuraiana	Rw2G027020 Rw5G031010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	27
AciI	CCGC	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw26I	GTCTC	2 cut(s)	170, 200
AlwNI	CAGNNNCTG	1 cut(s)	168
AoxI	GGCC	2 cut(s)	68, 82
ApeKI	GCWGC	2 cut(s)	21, 121
ApoI	RAATTY	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	68
AsuII	TTCGAA	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	33, 108
BccI	CCATC	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	170, 200
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	2 cut(s)	19, 122
BisI	GCNGC	2 cut(s)	22, 122
BlsI	GCNGC	2 cut(s)	23, 123
Bme1390I	CCNGG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	79, 188
BseDI	CCNNGG	2 cut(s)	79, 188
BseGI	GGATG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	33, 108
BshFI	GGCC	2 cut(s)	70, 84
BsiSI	CCGG	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	170, 200
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	70, 84
Bsp119I	TTCGAA	1 cut(s)	53
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	2 cut(s)	70, 84
BspMAI	CTGCAG	2 cut(s)	23, 126
BspT104I	TTCGAA	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	79, 188
BssT1I	CCWWGG	1 cut(s)	188
Bst4CI	ACNGT	3 cut(s)	80, 98, 152
BstBI	TTCGAA	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	89
BstMAI	GTCTC	2 cut(s)	170, 200
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	2 cut(s)	19, 122
BstV1I	GCAGC	2 cut(s)	33, 108
BsuRI	GGCC	2 cut(s)	70, 84
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	69
CseI	GACGC	1 cut(s)	13
CviJI	RGCY	6 cut(s)	70, 84, 121, 158, 168, 219
CviKI_1	RGCY	6 cut(s)	70, 84, 121, 158, 168, 219
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	22, 122
FokI	GGATG	1 cut(s)	76
Fsp4HI	GCNGC	2 cut(s)	22, 122
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	2 cut(s)	22, 122
HaeIII	GGCC	2 cut(s)	70, 84
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	1 cut(s)	13
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	28, 136
Hpy188I	TCNGA	2 cut(s)	94, 164
Hpy188III	TCNNGA	3 cut(s)	64, 110, 146
Hpy8I	GTNNAC	2 cut(s)	28, 136
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	3 cut(s)	80, 98, 152
HpyCH4V	TGCA	2 cut(s)	21, 124
LpnPI	CCDG	4 cut(s)	23, 51, 110, 154
Lsp1109I	GCAGC	2 cut(s)	33, 108
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	14
MluCI	AATT	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	3 cut(s)	17, 60, 158
MroXI	GAANNNNTTC	1 cut(s)	59
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	14
NspV	TTCGAA	1 cut(s)	53
PctI	GAATGC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	23, 123
PspPI	GGNCC	1 cut(s)	69
PstI	CTGCAG	2 cut(s)	23, 126
PstNI	CAGNNNCTG	1 cut(s)	168
SatI	GCNGC	2 cut(s)	22, 122
Sau96I	GGNCC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	2 cut(s)	61, 123
SfcI	CTRYAG	2 cut(s)	19, 122
SfuI	TTCGAA	1 cut(s)	53
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	3 cut(s)	80, 98, 152
TaqI	TCGA	1 cut(s)	53
TasI	AATT	1 cut(s)	47
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	2 cut(s)	21, 121
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	60
XapI	RAATTY	1 cut(s)	47
XbaI	TCTAGA	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.