Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004167

Physical Location & Seq

Genomic Coordinates Reverse (-)

27917435 .. 27918267

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0253500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGCTCCAAACCCCGCAACAAATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGATGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCATCTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGGGAACTAGTTCTCTTGGTACTGGTGGATCCATCGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTAGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATCGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTACAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGCGCATTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002199 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005856 GO:0005874 GO:0006457 GO:0006458 GO:0006810 GO:0007338 GO:0007339 GO:0008037 GO:0008150 GO:0009566 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009988 GO:0010035 GO:0010038 GO:0010556 GO:0010557 GO:0010604 GO:0010638 GO:0015630 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031647 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0035036 GO:0042221 GO:0042802 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044183 GO:0044297 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045935 GO:0046686 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050821 GO:0050896 GO:0051052 GO:0051054 GO:0051082 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051704 GO:0060255 GO:0060341 GO:0061077 GO:0065007 GO:0065008 GO:0070201 GO:0070202 GO:0070203 GO:0080090 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0101031 GO:1901998 GO:1903827 GO:1903829 GO:1904356 GO:1904358 GO:1904814 GO:1904816 GO:1904851 GO:1904951 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

247

Amino Acids

26.56

Weight (kDa)

4.99

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	38 - 99	1.7e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11830 AT3G11830
fragaria_vesca	FvH4_3g27240 FvH4_3g27240 FvH4_3g27240 FvH4_3g27240
malus_domestica	MD03G1164100.v1.1
prunus_persica	Prupe.6G154400_v2.0.a1 Prupe.6G154400_v2.0.a1
pyrus_communis	pycom11g15670 pycom12499g00060
rosa_chinensis	RchiOBHm_Chr2g0128841 RchiOBHm_Chr5g0049871
rosa_laevigata	RLG00000019032 RLG00000034659
rosa_multiflora	Rmu_sc0007061.1_g000001 Rmu_sc0008387.1_g000010 Rmu_sc0035081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031490 Rroxscaffold_2G00115180
rosa_rugosa	Rorug02G0281600 Rorug02G0281700 Rorug05G0253500
rosa_samantha	Rh2AG334200 Rh2BG342200 Rh2CG321100 Rh2DG358900 Rh5AG328400 Rh5BG338900 Rh5CG364600 Rh5DG351300
rosa_wichuraiana	Rw2G027020 Rw5G031010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	612
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccIII	TCCGGA	1 cut(s)	728
AciI	CCGC	2 cut(s)	17, 678
AclI	AACGTT	1 cut(s)	699
AclWI	GGATC	8 cut(s)	165, 354, 367, 402, 415, 435, 448, 483
AcuI	CTGAAG	1 cut(s)	644
AcyI	GRCGYC	1 cut(s)	609
AfaI	GTAC	2 cut(s)	115, 352
AfiI	CCNNNNNNNGG	2 cut(s)	437, 599
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	575
AhlI	ACTAGT	2 cut(s)	338, 467
AjnI	CCWGG	1 cut(s)	564
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	6 cut(s)	7, 77, 223, 434, 712, 734
AluI	AGCT	6 cut(s)	7, 77, 223, 434, 712, 734
Alw21I	GWGCWC	4 cut(s)	9, 201, 600, 714
Alw44I	GTGCAC	1 cut(s)	596
AlwI	GGATC	8 cut(s)	165, 354, 367, 402, 415, 435, 448, 483
Ama87I	CYCGRG	1 cut(s)	285
Aor13HI	TCCGGA	1 cut(s)	728
AoxI	GGCC	1 cut(s)	428
ApaLI	GTGCAC	1 cut(s)	596
ApeKI	GCWGC	3 cut(s)	74, 317, 734
ArsI	GACNNNNNNTTYG	4 cut(s)	407, 439, 440, 472
Asp700I	GAANNNNTTC	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	3 cut(s)	381, 428, 462
AsuHPI	GGTGA	1 cut(s)	554
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	2 cut(s)	381, 462
BaeGI	GKGCMC	3 cut(s)	188, 330, 600
BamHI	GGATCC	3 cut(s)	359, 407, 440
BanII	GRGCYC	3 cut(s)	9, 286, 714
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	632
Bbv12I	GWGCWC	4 cut(s)	9, 201, 600, 714
BbvI	GCAGC	3 cut(s)	86, 304, 721
BccI	CCATC	7 cut(s)	114, 196, 371, 419, 452, 476, 733
BceAI	ACGGC	2 cut(s)	96, 616
BciT130I	CCWGG	1 cut(s)	566
BcuI	ACTAGT	2 cut(s)	338, 467
BfaI	CTAG	4 cut(s)	339, 402, 468, 742
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	3 cut(s)	75, 318, 735
BlpI	GCTNAGC	1 cut(s)	713
BlsI	GCNGC	3 cut(s)	76, 319, 736
Bme1390I	CCNGG	1 cut(s)	566
Bme18I	GGWCC	2 cut(s)	381, 462
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	3 cut(s)	381, 428, 462
BmiI	GGNNCC	8 cut(s)	30, 269, 361, 382, 409, 442, 463, 511
BmrFI	CCNGG	1 cut(s)	566
BpiI	GAAGAC	1 cut(s)	632
BpmI	CTGGAG	4 cut(s)	117, 203, 306, 546
Bpu10I	CCTNAGC	1 cut(s)	673
Bpu1102I	GCTNAGC	1 cut(s)	713
BpuEI	CTTGAG	2 cut(s)	137, 728
Bsa29I	ATCGAT	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	609
BsaJI	CCNNGG	2 cut(s)	330, 636
BsaWI	WCCGGW	1 cut(s)	728
Bsc4I	CCNNNNNNNGG	2 cut(s)	437, 599
Bse1I	ACTGG	6 cut(s)	229, 323, 358, 391, 400, 529
BseAI	TCCGGA	1 cut(s)	728
BseBI	CCWGG	1 cut(s)	566
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	330, 636
BseGI	GGATG	2 cut(s)	536, 725
BseLI	CCNNNNNNNGG	2 cut(s)	437, 599
BseMII	CTCAG	2 cut(s)	687, 727
BseNI	ACTGG	6 cut(s)	229, 323, 358, 391, 400, 529
BseRI	GAGGAG	3 cut(s)	68, 567, 570
BseSI	GKGCMC	3 cut(s)	188, 330, 600
BseXI	GCAGC	3 cut(s)	86, 304, 721
BshFI	GGCC	1 cut(s)	430
BshVI	ATCGAT	1 cut(s)	366
BsiHKAI	GWGCWC	4 cut(s)	9, 201, 600, 714
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	729
BslI	CCNNNNNNNGG	2 cut(s)	437, 599
BsnI	GGCC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	7 cut(s)	9, 188, 201, 286, 330, 600, 714
Bsp13I	TCCGGA	1 cut(s)	728
Bsp143I	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
Bsp1720I	GCTNAGC	1 cut(s)	713
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	2 cut(s)	17, 678
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	2 cut(s)	686, 726
BspDI	ATCGAT	1 cut(s)	366
BspEI	TCCGGA	1 cut(s)	728
BspLI	GGNNCC	8 cut(s)	30, 269, 361, 382, 409, 442, 463, 511
BspPI	GGATC	8 cut(s)	165, 354, 367, 402, 415, 435, 448, 483
BsrI	ACTGG	6 cut(s)	229, 323, 358, 391, 400, 529
BssECI	CCNNGG	2 cut(s)	330, 636
BssMI	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
BssNI	GRCGYC	1 cut(s)	609
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	1 cut(s)	689
Bst6I	CTCTTC	1 cut(s)	585
BstACI	GRCGYC	1 cut(s)	609
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	2 cut(s)	673, 713
BstDSI	CCRYGG	1 cut(s)	330
BstEII	GGTNACC	2 cut(s)	617, 680
BstF5I	GGATG	2 cut(s)	536, 725
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	9 cut(s)	160, 213, 362, 370, 410, 443, 491, 499, 562
BstMBI	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
BstNI	CCWGG	1 cut(s)	566
BstNSI	RCATGY	1 cut(s)	242
BstPI	GGTNACC	2 cut(s)	617, 680
BstSCI	CCNGG	1 cut(s)	564
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	3 cut(s)	188, 330, 600
BstV1I	GCAGC	3 cut(s)	86, 304, 721
BstV2I	GAAGAC	1 cut(s)	632
BstX2I	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
Bsu15I	ATCGAT	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	430
BsuTUI	ATCGAT	1 cut(s)	366
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	536, 725
BtsIMutI	CAGTG	3 cut(s)	330, 384, 694
Cac8I	GCNNGC	1 cut(s)	432
CfoI	GCGC	1 cut(s)	650
Cfr13I	GGNCC	3 cut(s)	381, 428, 462
ClaI	ATCGAT	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	114, 351
CviAII	CATG	3 cut(s)	94, 239, 331
CviQI	GTAC	2 cut(s)	114, 351
DdeI	CTNAG	2 cut(s)	673, 713
DpnI	GATC	9 cut(s)	159, 212, 361, 369, 409, 442, 490, 498, 561
DpnII	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Ecl136II	GAGCTC	2 cut(s)	7, 712
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	3 cut(s)	9, 286, 714
Eco47I	GGWCC	2 cut(s)	381, 462
Eco53kI	GAGCTC	2 cut(s)	7, 712
Eco57I	CTGAAG	1 cut(s)	644
Eco88I	CYCGRG	1 cut(s)	285
Eco91I	GGTNACC	2 cut(s)	617, 680
EcoICRI	GAGCTC	2 cut(s)	7, 712
EcoO65I	GGTNACC	2 cut(s)	617, 680
EcoRII	CCWGG	1 cut(s)	564
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	3 cut(s)	9, 286, 714
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	97, 242, 334
FaiI	YATR	4 cut(s)	95, 234, 240, 332
FatI	CATG	3 cut(s)	93, 238, 330
FauI	CCCGC	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	75, 318, 735
FokI	GGATG	2 cut(s)	523, 712
FriOI	GRGCYC	3 cut(s)	9, 286, 714
Fsp4HI	GCNGC	3 cut(s)	75, 318, 735
FspBI	CTAG	4 cut(s)	339, 402, 468, 742
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	3 cut(s)	75, 318, 735
GsuI	CTGGAG	4 cut(s)	117, 203, 306, 546
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	1 cut(s)	729
HhaI	GCGC	1 cut(s)	650
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	3 cut(s)	97, 242, 334
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HinfI	GANTC	2 cut(s)	124, 147
HpaII	CCGG	1 cut(s)	729
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	3 cut(s)	384, 465, 598
Hpy188I	TCNGA	1 cut(s)	637
Hpy188III	TCNNGA	6 cut(s)	134, 206, 271, 287, 707, 729
Hpy8I	GTNNAC	3 cut(s)	384, 465, 598
HpyAV	CCTTC	1 cut(s)	635
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	4 cut(s)	168, 276, 609, 699
HpyCH4V	TGCA	1 cut(s)	598
HpyF3I	CTNAG	2 cut(s)	673, 713
HpySE526I	ACGT	4 cut(s)	168, 276, 609, 699
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	3 cut(s)	97, 242, 334
HspAI	GCGC	1 cut(s)	648
Kpn2I	TCCGGA	1 cut(s)	728
Kzo9I	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
LmnI	GCTCC	4 cut(s)	4, 12, 325, 731
Lsp1109I	GCAGC	3 cut(s)	86, 304, 721
MaeI	CTAG	4 cut(s)	339, 402, 468, 742
MaeII	ACGT	4 cut(s)	168, 276, 609, 699
MaeIII	GTNAC	3 cut(s)	617, 656, 680
MalI	GATC	9 cut(s)	159, 212, 361, 369, 409, 442, 490, 498, 561
MboI	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
MboII	GAAGA	2 cut(s)	572, 637
MflI	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
MhlI	GDGCHC	7 cut(s)	9, 188, 201, 286, 330, 600, 714
MluCI	AATT	3 cut(s)	373, 421, 454
MroI	TCCGGA	1 cut(s)	728
MroXI	GAANNNNTTC	1 cut(s)	340
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	3 cut(s)	77, 223, 434
MspI	CCGG	1 cut(s)	729
MspR9I	CCNGG	1 cut(s)	566
MvaI	CCWGG	1 cut(s)	566
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
NlaIII	CATG	3 cut(s)	97, 242, 334
NlaIV	GGNNCC	8 cut(s)	30, 269, 361, 382, 409, 442, 463, 511
NspI	RCATGY	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	285
PciI	ACATGT	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	606
PdmI	GAANNNNTTC	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	124, 147
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	76, 319, 736
PscI	ACATGT	1 cut(s)	238
Psp124BI	GAGCTC	2 cut(s)	9, 714
Psp1406I	AACGTT	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	564
PspEI	GGTNACC	2 cut(s)	617, 680
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	8 cut(s)	30, 269, 361, 382, 409, 442, 463, 511
PspPI	GGNCC	3 cut(s)	381, 428, 462
PsuI	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
PvuII	CAGCTG	3 cut(s)	77, 223, 434
RsaI	GTAC	2 cut(s)	115, 352
RsaNI	GTAC	2 cut(s)	114, 351
SacI	GAGCTC	2 cut(s)	9, 714
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	3 cut(s)	75, 318, 735
Sau3AI	GATC	9 cut(s)	157, 210, 359, 367, 407, 440, 488, 496, 559
Sau96I	GGNCC	3 cut(s)	381, 428, 462
ScrFI	CCNGG	1 cut(s)	566
SduI	GDGCHC	7 cut(s)	9, 188, 201, 286, 330, 600, 714
SfcI	CTRYAG	1 cut(s)	192
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	2 cut(s)	381, 462
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	3 cut(s)	152, 285, 707
SmoI	CTYRAG	3 cut(s)	152, 285, 707
SpeI	ACTAGT	2 cut(s)	338, 467
Sse9I	AATT	3 cut(s)	373, 421, 454
SsiI	CCGC	2 cut(s)	17, 678
SspMI	CTAG	4 cut(s)	339, 402, 468, 742
SstI	GAGCTC	2 cut(s)	9, 714
StyD4I	CCNGG	1 cut(s)	564
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	4 cut(s)	171, 279, 612, 702
TaqI	TCGA	4 cut(s)	286, 366, 414, 447
TasI	AATT	3 cut(s)	373, 421, 454
TfiI	GAWTC	2 cut(s)	124, 147
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	3 cut(s)	330, 391, 694
TseI	GCWGC	3 cut(s)	74, 317, 734
TspDTI	ATGAA	1 cut(s)	314
TspRI	CASTG	3 cut(s)	330, 391, 694
Van91I	CCANNNNNTGG	1 cut(s)	437
VneI	GTGCAC	1 cut(s)	596
VpaK11BI	GGWCC	2 cut(s)	381, 462
XceI	RCATGY	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	340
XspI	CTAG	4 cut(s)	339, 402, 468, 742
ZraI	GACGTC	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.