DNA-directed RNA polymerases I and III subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G29540 AT2G29540 AT2G29540 |
| fragaria_vesca | FvH4_6g26980 FvH4_7g06540 |
| malus_domestica | MD10G1078400.v1.1 |
| prunus_persica | Prupe.2G047700_v2.0.a1 Prupe.2G047700_v2.0.a1 Prupe.3G125300_v2.0.a1 Prupe.3G125300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0334971 RchiOBHm_Chr2g0128821 |
| rosa_laevigata | RLG00000019027 |
| rosa_multiflora | Rmu_sc0007061.1_g000007 Rmu_sc0009556.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00115240 Rroxscaffold_4G00316330 |
| rosa_rugosa | Rorug01G0118200 Rorug02G0281300 Rorug02G0281400 Rorug02G0281500 Rorug02G0281600 Rorug02G0281600 |
| rosa_samantha | Rh1AG141500 Rh1BG110000 Rh1CG133400 Rh1DG146100 Rh2AG334100 Rh2BG342100 Rh2CG321000 Rh2DG358800 |
| rosa_wichuraiana | Rw1G011740 Rw2G027000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 6 cut(s) | 98, 147, 176, 189, 257, 306 |
| AcsI | RAATTY | 1 cut(s) | 194 |
| AfaI | GTAC | 1 cut(s) | 206 |
| AgsI | TTSAA | 4 cut(s) | 175, 283, 358, 392 |
| AjnI | CCWGG | 1 cut(s) | 294 |
| AlwI | GGATC | 6 cut(s) | 98, 147, 176, 189, 257, 306 |
| ApoI | RAATTY | 1 cut(s) | 194 |
| AspA2I | CCTAGG | 1 cut(s) | 49 |
| AspS9I | GGNCC | 1 cut(s) | 93 |
| AsuHPI | GGTGA | 2 cut(s) | 272, 319 |
| AvaII | GGWCC | 1 cut(s) | 93 |
| AvrII | CCTAGG | 1 cut(s) | 49 |
| BamHI | GGATCC | 1 cut(s) | 181 |
| BccI | CCATC | 1 cut(s) | 229 |
| BciT130I | CCWGG | 1 cut(s) | 296 |
| BfaI | CTAG | 2 cut(s) | 27, 50 |
| BfmI | CTRYAG | 1 cut(s) | 255 |
| BlnI | CCTAGG | 1 cut(s) | 49 |
| Bme1390I | CCNGG | 1 cut(s) | 296 |
| Bme18I | GGWCC | 1 cut(s) | 93 |
| BmgT120I | GGNCC | 1 cut(s) | 93 |
| BmiI | GGNNCC | 3 cut(s) | 94, 95, 183 |
| BmrFI | CCNGG | 1 cut(s) | 296 |
| BmsI | GCATC | 1 cut(s) | 277 |
| BsaBI | GATNNNNATC | 1 cut(s) | 138 |
| BsaJI | CCNNGG | 2 cut(s) | 49, 185 |
| Bse8I | GATNNNNATC | 1 cut(s) | 138 |
| BseBI | CCWGG | 1 cut(s) | 296 |
| BseDI | CCNNGG | 2 cut(s) | 49, 185 |
| BseGI | GGATG | 1 cut(s) | 217 |
| BseJI | GATNNNNATC | 1 cut(s) | 138 |
| BsiSI | CCGG | 1 cut(s) | 23 |
| BslFI | GGGAC | 1 cut(s) | 79 |
| BsmFI | GGGAC | 1 cut(s) | 79 |
| BsmI | GAATGC | 1 cut(s) | 210 |
| Bsp143I | GATC | 5 cut(s) | 103, 139, 181, 262, 298 |
| BspLI | GGNNCC | 3 cut(s) | 94, 95, 183 |
| BspPI | GGATC | 6 cut(s) | 98, 147, 176, 189, 257, 306 |
| BssECI | CCNNGG | 2 cut(s) | 49, 185 |
| BssMI | GATC | 5 cut(s) | 103, 139, 181, 262, 298 |
| BssT1I | CCWWGG | 2 cut(s) | 49, 185 |
| Bst2UI | CCWGG | 1 cut(s) | 296 |
| BstC8I | GCNNGC | 2 cut(s) | 292, 317 |
| BstF5I | GGATG | 1 cut(s) | 217 |
| BstKTI | GATC | 5 cut(s) | 106, 142, 184, 265, 301 |
| BstMBI | GATC | 5 cut(s) | 103, 139, 181, 262, 298 |
| BstNI | CCWGG | 1 cut(s) | 296 |
| BstNSI | RCATGY | 2 cut(s) | 294, 323 |
| BstSCI | CCNGG | 1 cut(s) | 294 |
| BstSFI | CTRYAG | 1 cut(s) | 255 |
| BstX2I | RGATCY | 2 cut(s) | 181, 298 |
| BstYI | RGATCY | 2 cut(s) | 181, 298 |
| BtsCI | GGATG | 1 cut(s) | 217 |
| Cac8I | GCNNGC | 2 cut(s) | 292, 317 |
| Cfr13I | GGNCC | 1 cut(s) | 93 |
| Csp6I | GTAC | 1 cut(s) | 205 |
| CviAII | CATG | 4 cut(s) | 291, 304, 320, 382 |
| CviJI | RGCY | 2 cut(s) | 26, 344 |
| CviKI_1 | RGCY | 2 cut(s) | 26, 344 |
| CviQI | GTAC | 1 cut(s) | 205 |
| DpnI | GATC | 5 cut(s) | 105, 141, 183, 264, 300 |
| DpnII | GATC | 5 cut(s) | 103, 139, 181, 262, 298 |
| Eco130I | CCWWGG | 2 cut(s) | 49, 185 |
| Eco47I | GGWCC | 1 cut(s) | 93 |
| EcoO109I | RGGNCCY | 1 cut(s) | 93 |
| EcoRII | CCWGG | 1 cut(s) | 294 |
| EcoT14I | CCWWGG | 2 cut(s) | 49, 185 |
| EcoT22I | ATGCAT | 1 cut(s) | 292 |
| ErhI | CCWWGG | 2 cut(s) | 49, 185 |
| FaeI | CATG | 4 cut(s) | 294, 307, 323, 385 |
| FaiI | YATR | 7 cut(s) | 61, 83, 144, 292, 305, 321, 383 |
| FaqI | GGGAC | 1 cut(s) | 79 |
| FatI | CATG | 4 cut(s) | 290, 303, 319, 381 |
| FokI | GGATG | 1 cut(s) | 204 |
| FspBI | CTAG | 2 cut(s) | 27, 50 |
| HapII | CCGG | 1 cut(s) | 23 |
| Hin1II | CATG | 4 cut(s) | 294, 307, 323, 385 |
| HinfI | GANTC | 3 cut(s) | 175, 246, 392 |
| HpaII | CCGG | 1 cut(s) | 23 |
| HphI | GGTGA | 2 cut(s) | 272, 319 |
| Hpy166II | GTNNAC | 1 cut(s) | 168 |
| Hpy188I | TCNGA | 3 cut(s) | 103, 226, 397 |
| Hpy188III | TCNNGA | 3 cut(s) | 179, 250, 363 |
| Hpy8I | GTNNAC | 1 cut(s) | 168 |
| HpyCH4V | TGCA | 1 cut(s) | 290 |
| Hsp92II | CATG | 4 cut(s) | 294, 307, 323, 385 |
| KflI | GGGWCCC | 1 cut(s) | 93 |
| Kzo9I | GATC | 5 cut(s) | 103, 139, 181, 262, 298 |
| LweI | GCATC | 1 cut(s) | 277 |
| MaeI | CTAG | 2 cut(s) | 27, 50 |
| MalI | GATC | 5 cut(s) | 105, 141, 183, 264, 300 |
| MboI | GATC | 5 cut(s) | 103, 139, 181, 262, 298 |
| MboII | GAAGA | 1 cut(s) | 9 |
| MflI | RGATCY | 2 cut(s) | 181, 298 |
| MluCI | AATT | 1 cut(s) | 194 |
| MnlI | CCTC | 3 cut(s) | 130, 225, 370 |
| Mph1103I | ATGCAT | 1 cut(s) | 292 |
| MseI | TTAA | 3 cut(s) | 237, 336, 403 |
| MslI | CAYNNNNRTG | 1 cut(s) | 308 |
| MspI | CCGG | 1 cut(s) | 23 |
| MspR9I | CCNGG | 1 cut(s) | 296 |
| Mva1269I | GAATGC | 1 cut(s) | 210 |
| MvaI | CCWGG | 1 cut(s) | 296 |
| NdeII | GATC | 5 cut(s) | 103, 139, 181, 262, 298 |
| NlaIII | CATG | 4 cut(s) | 294, 307, 323, 385 |
| NlaIV | GGNNCC | 3 cut(s) | 94, 95, 183 |
| NsiI | ATGCAT | 1 cut(s) | 292 |
| NspI | RCATGY | 2 cut(s) | 294, 323 |
| PaeI | GCATGC | 1 cut(s) | 294 |
| PctI | GAATGC | 1 cut(s) | 210 |
| PfeI | GAWTC | 3 cut(s) | 175, 246, 392 |
| PpuMI | RGGWCCY | 1 cut(s) | 93 |
| Psp5II | RGGWCCY | 1 cut(s) | 93 |
| Psp6I | CCWGG | 1 cut(s) | 294 |
| PspGI | CCWGG | 1 cut(s) | 294 |
| PspN4I | GGNNCC | 3 cut(s) | 94, 95, 183 |
| PspPI | GGNCC | 1 cut(s) | 93 |
| PspPPI | RGGWCCY | 1 cut(s) | 93 |
| PsuI | RGATCY | 2 cut(s) | 181, 298 |
| RsaI | GTAC | 1 cut(s) | 206 |
| RsaNI | GTAC | 1 cut(s) | 205 |
| RseI | CAYNNNNRTG | 1 cut(s) | 308 |
| SaqAI | TTAA | 3 cut(s) | 237, 336, 403 |
| Sau3AI | GATC | 5 cut(s) | 103, 139, 181, 262, 298 |
| Sau96I | GGNCC | 1 cut(s) | 93 |
| ScrFI | CCNGG | 1 cut(s) | 296 |
| SetI | ASST | 3 cut(s) | 55, 167, 262 |
| SfaNI | GCATC | 1 cut(s) | 277 |
| SfcI | CTRYAG | 1 cut(s) | 255 |
| SinI | GGWCC | 1 cut(s) | 93 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 308 |
| SphI | GCATGC | 1 cut(s) | 294 |
| Sse9I | AATT | 1 cut(s) | 194 |
| SspI | AATATT | 1 cut(s) | 241 |
| SspMI | CTAG | 2 cut(s) | 27, 50 |
| StyD4I | CCNGG | 1 cut(s) | 294 |
| StyI | CCWWGG | 2 cut(s) | 49, 185 |
| TaqI | TCGA | 1 cut(s) | 362 |
| TasI | AATT | 1 cut(s) | 194 |
| TfiI | GAWTC | 3 cut(s) | 175, 246, 392 |
| Tru1I | TTAA | 3 cut(s) | 237, 336, 403 |
| Tru9I | TTAA | 3 cut(s) | 237, 336, 403 |
| VpaK11BI | GGWCC | 1 cut(s) | 93 |
| XapI | RAATTY | 1 cut(s) | 194 |
| XceI | RCATGY | 2 cut(s) | 294, 323 |
| XmaJI | CCTAGG | 1 cut(s) | 49 |
| XspI | CTAG | 2 cut(s) | 27, 50 |
| Zsp2I | ATGCAT | 1 cut(s) | 292 |