Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007061.1

Orthogroup ID

OG0004203

Physical Location & Seq

Genomic Coordinates Forward (+)

44541 .. 48346

Gene Structure 3806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007061.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggcgtcgccacagagaccacggcggagctggccggtcttgacctcgaggagagcaaacactaacagagctccggcgtcgtctaagagagaccggtgttgtgaggcgagctcgagggcgttcttggcgcagacgacgacgtcttgctctgagatagaaaagaactcgtctctcaccgtcccacgattcagcaagttctgtgaagaaatggaacttgggacactttctgatcccagccaatccacattctctttggttgatgaggaccacacatttgcaaatgctatcagatttactttgaatcaggatccaagggcgaaattctgtgggtacagcattcctcatccatcagataaccgggttaatattagaatccagactacaggtgatccagcgaaagatgtattcaaagatgcatgtcaggatctcatggtgatgtgccagcatgtgagcaacacttttgacaaggctgtggttgatttcaaaatgagcaagtctgtggatggcatggatattgaatcaaatagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_L_2

Protein Analysis

176

Amino Acids

19.68

Weight (kDa)

7.58

Isoelectric Point (pI)

58.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29540 AT2G29540 AT2G29540
fragaria_vesca	FvH4_6g26980 FvH4_7g06540
malus_domestica	MD10G1078400.v1.1
prunus_persica	Prupe.2G047700_v2.0.a1 Prupe.2G047700_v2.0.a1 Prupe.3G125300_v2.0.a1 Prupe.3G125300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0334971 RchiOBHm_Chr2g0128821
rosa_laevigata	RLG00000019027
rosa_multiflora	Rmu_sc0007061.1_g000007 Rmu_sc0009556.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115240 Rroxscaffold_4G00316330
rosa_rugosa	Rorug01G0118200 Rorug02G0281300 Rorug02G0281400 Rorug02G0281500 Rorug02G0281600 Rorug02G0281600
rosa_samantha	Rh1AG141500 Rh1BG110000 Rh1CG133400 Rh1DG146100 Rh2AG334100 Rh2BG342100 Rh2CG321000 Rh2DG358800
rosa_wichuraiana	Rw1G011740 Rw2G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	139
AatII	GACGTC	1 cut(s)	143
AbsI	CCTCGAGG	1 cut(s)	46
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	5 cut(s)	224, 302, 315, 383, 432
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	320
AcyI	GRCGYC	3 cut(s)	5, 77, 140
AfaI	GTAC	1 cut(s)	332
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	4 cut(s)	301, 409, 484, 518
AjuI	GAANNNNNNNTTGG	2 cut(s)	198, 230
AluBI	AGCT	3 cut(s)	30, 71, 111
AluI	AGCT	3 cut(s)	30, 71, 111
Alw21I	GWGCWC	2 cut(s)	73, 113
Alw26I	GTCTC	3 cut(s)	10, 84, 174
AlwI	GGATC	5 cut(s)	224, 302, 315, 383, 432
Ama87I	CYCGRG	2 cut(s)	46, 112
AoxI	GGCC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	320
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AsiGI	ACCGGT	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	3 cut(s)	166, 398, 445
AvaI	CYCGRG	2 cut(s)	46, 112
AvaII	GGWCC	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	307
BanII	GRGCYC	2 cut(s)	73, 113
Bbv12I	GWGCWC	2 cut(s)	73, 113
BccI	CCATC	2 cut(s)	355, 497
BceAI	ACGGC	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	3 cut(s)	10, 84, 174
BfmI	CTRYAG	1 cut(s)	381
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	2 cut(s)	46, 112
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	403
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
BpuMI	CCSGG	1 cut(s)	359
BsaHI	GRCGYC	3 cut(s)	5, 77, 140
BsaI	GGTCTC	2 cut(s)	10, 84
BsaJI	CCNNGG	2 cut(s)	20, 311
BsaWI	WCCGGW	1 cut(s)	93
Bse118I	RCCGGY	2 cut(s)	34, 93
BseDI	CCNNGG	2 cut(s)	20, 311
BseGI	GGATG	2 cut(s)	343, 508
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	64
BseYI	CCCAGC	1 cut(s)	233
BshFI	GGCC	1 cut(s)	34
BshTI	ACCGGT	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	73, 113
BsiHKCI	CYCGRG	2 cut(s)	46, 112
BsiSI	CCGG	4 cut(s)	35, 74, 94, 358
BslFI	GGGAC	2 cut(s)	164, 232
BsmAI	GTCTC	3 cut(s)	10, 84, 174
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	2 cut(s)	164, 232
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	34
Bso31I	GGTCTC	2 cut(s)	10, 84
BsoBI	CYCGRG	2 cut(s)	46, 112
Bsp1286I	GDGCHC	2 cut(s)	73, 113
Bsp143I	GATC	4 cut(s)	229, 307, 388, 424
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	5 cut(s)	224, 302, 315, 383, 432
BspTNI	GGTCTC	2 cut(s)	10, 84
BsrFI	RCCGGY	2 cut(s)	34, 93
BssAI	RCCGGY	2 cut(s)	34, 93
BssECI	CCNNGG	2 cut(s)	20, 311
BssMI	GATC	4 cut(s)	229, 307, 388, 424
BssNI	GRCGYC	3 cut(s)	5, 77, 140
BssT1I	CCWWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	178
BstACI	GRCGYC	3 cut(s)	5, 77, 140
BstC8I	GCNNGC	3 cut(s)	32, 109, 443
BstDEI	CTNAG	2 cut(s)	84, 150
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	343, 508
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	4 cut(s)	232, 310, 391, 427
BstMAI	GTCTC	3 cut(s)	10, 84, 174
BstMBI	GATC	4 cut(s)	229, 307, 388, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 125
BstNSI	RCATGY	2 cut(s)	420, 449
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	381
BstX2I	RGATCY	2 cut(s)	307, 424
BstYI	RGATCY	2 cut(s)	307, 424
BsuRI	GGCC	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	343, 508
Cac8I	GCNNGC	3 cut(s)	32, 109, 443
CfoI	GCGC	1 cut(s)	130
Cfr10I	RCCGGY	2 cut(s)	34, 93
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	331
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	4 cut(s)	417, 430, 446, 508
CviJI	RGCY	6 cut(s)	30, 34, 71, 111, 237, 470
CviKI_1	RGCY	6 cut(s)	30, 34, 71, 111, 237, 470
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	2 cut(s)	84, 150
DpnI	GATC	4 cut(s)	231, 309, 390, 426
DpnII	GATC	4 cut(s)	229, 307, 388, 424
DrdI	GACNNNNNNGTC	1 cut(s)	139
DseDI	GACNNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	40
Ecl136II	GAGCTC	2 cut(s)	71, 111
Eco130I	CCWWGG	1 cut(s)	311
Eco24I	GRGCYC	2 cut(s)	73, 113
Eco31I	GGTCTC	2 cut(s)	10, 84
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	2 cut(s)	71, 111
Eco88I	CYCGRG	2 cut(s)	46, 112
EcoICRI	GAGCTC	2 cut(s)	71, 111
EcoT14I	CCWWGG	1 cut(s)	311
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	2 cut(s)	73, 113
ErhI	CCWWGG	1 cut(s)	311
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	4 cut(s)	420, 433, 449, 511
FaiI	YATR	4 cut(s)	418, 431, 447, 509
FaqI	GGGAC	2 cut(s)	164, 232
FatI	CATG	4 cut(s)	416, 429, 445, 507
FokI	GGATG	2 cut(s)	330, 515
FriOI	GRGCYC	2 cut(s)	73, 113
GlaI	GCGC	1 cut(s)	129
GsaI	CCCAGC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	4 cut(s)	35, 74, 94, 358
HgaI	GACGC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	3 cut(s)	5, 77, 140
Hin1II	CATG	4 cut(s)	420, 433, 449, 511
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	4 cut(s)	186, 301, 372, 518
HpaII	CCGG	4 cut(s)	35, 74, 94, 358
HphI	GGTGA	3 cut(s)	166, 398, 445
Hpy188I	TCNGA	4 cut(s)	151, 229, 290, 352
Hpy188III	TCNNGA	4 cut(s)	40, 305, 376, 422
Hpy99I	CGWCG	4 cut(s)	10, 82, 139, 142
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	2 cut(s)	278, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 125
HpyF3I	CTNAG	2 cut(s)	84, 150
HpySE526I	ACGT	1 cut(s)	140
Hsp92I	GRCGYC	3 cut(s)	5, 77, 140
Hsp92II	CATG	4 cut(s)	420, 433, 449, 511
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	4 cut(s)	229, 307, 388, 424
LmnI	GCTCC	2 cut(s)	27, 76
LweI	GCATC	1 cut(s)	403
MaeII	ACGT	1 cut(s)	140
MalI	GATC	4 cut(s)	231, 309, 390, 426
MboI	GATC	4 cut(s)	229, 307, 388, 424
MboII	GAAGA	1 cut(s)	215
MflI	RGATCY	2 cut(s)	307, 424
MhlI	GDGCHC	2 cut(s)	73, 113
MluCI	AATT	1 cut(s)	320
MnlI	CCTC	6 cut(s)	42, 55, 97, 108, 256, 351
Mph1103I	ATGCAT	1 cut(s)	418
MseI	TTAA	2 cut(s)	363, 529
MslI	CAYNNNNRTG	1 cut(s)	434
MspI	CCGG	4 cut(s)	35, 74, 94, 358
MspR9I	CCNGG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	31, 125
NciI	CCSGG	1 cut(s)	359
NdeII	GATC	4 cut(s)	229, 307, 388, 424
NlaIII	CATG	4 cut(s)	420, 433, 449, 511
NlaIV	GGNNCC	1 cut(s)	309
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	2 cut(s)	420, 449
PaeR7I	CTCGAG	2 cut(s)	46, 112
PctI	GAATGC	1 cut(s)	336
PfeI	GAWTC	4 cut(s)	186, 301, 372, 518
PflFI	GACNNNGTC	1 cut(s)	139
PinAI	ACCGGT	1 cut(s)	93
Psp124BI	GAGCTC	2 cut(s)	73, 113
PspFI	CCCAGC	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	265
PspXI	VCTCGAGB	2 cut(s)	46, 112
PsuI	RGATCY	2 cut(s)	307, 424
PsyI	GACNNNGTC	1 cut(s)	139
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	2 cut(s)	73, 113
SaqAI	TTAA	2 cut(s)	363, 529
Sau3AI	GATC	4 cut(s)	229, 307, 388, 424
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	2 cut(s)	73, 113
SetI	ASST	6 cut(s)	32, 47, 73, 113, 143, 388
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	1 cut(s)	381
Sfr274I	CTCGAG	2 cut(s)	46, 112
SinI	GGWCC	1 cut(s)	265
SlaI	CTCGAG	2 cut(s)	46, 112
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	2 cut(s)	46, 112
SmoI	CTYRAG	2 cut(s)	46, 112
Sse9I	AATT	1 cut(s)	320
SsiI	CCGC	1 cut(s)	25
SspI	AATATT	1 cut(s)	367
SstI	GAGCTC	2 cut(s)	73, 113
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	2 cut(s)	47, 113
TasI	AATT	1 cut(s)	320
TfiI	GAWTC	4 cut(s)	186, 301, 372, 518
Tru1I	TTAA	2 cut(s)	363, 529
Tru9I	TTAA	2 cut(s)	363, 529
Tth111I	GACNNNGTC	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	2 cut(s)	420, 449
XcmI	CCANNNNNNNNNTGG	2 cut(s)	27, 250
XhoI	CTCGAG	2 cut(s)	46, 112
ZraI	GACGTC	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.