Rh1CG133400

DNA-directed RNA polymerases I and III subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004203
Physical Location & Seq
Forward (+)
29259790 .. 29275833
16044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG133400.1

Sequence Viewer

Length: 237 bp
ATGAATTGTACAGGTGATCCAGCAAACGATGTATTCAAAGATGCATGCCAGGATCTCATGGTGATGTGCCAGCATGTGAGCAACACTTTTAACAAGGCTGTGGTTGATTTCAAATTGAGCAATTCTGTGGAGGGCCACCTCCATCTTCCTAGCCCAGAACGGCTTCGCCTGCTTCGCTCTCGACATCGAATCCCACAGCCGGTCCCACGGCCTCAGAGCCTTCATCCCAAACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169
Pfam Domains
Protein Families
RNA_pol_L_2

Protein Analysis

78

Amino Acids

8.91

Weight (kDa)

9.41

Isoelectric Point (pI)

68.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 232
AclWI GGATC 2 cut(s) 11, 60
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 2 cut(s) 37, 112
AjnI CCWGG 1 cut(s) 48
AlwI GGATC 2 cut(s) 11, 60
AoxI GGCC 2 cut(s) 133, 209
Asp700I GAANNNNTTC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 133, 202
AsuHPI GGTGA 2 cut(s) 26, 73
AvaII GGWCC 1 cut(s) 202
BccI CCATC 1 cut(s) 150
BceAI ACGGC 2 cut(s) 176, 224
BciT130I CCWGG 1 cut(s) 50
BfaI CTAG 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 133, 202
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse118I RCCGGY 1 cut(s) 199
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 227
BshFI GGCC 2 cut(s) 135, 211
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 2 cut(s) 135, 211
Bsp1407I TGTACA 1 cut(s) 8
Bsp143I GATC 2 cut(s) 16, 52
BspANI GGCC 2 cut(s) 135, 211
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 2 cut(s) 11, 60
BsrFI RCCGGY 1 cut(s) 199
BsrGI TGTACA 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 2 cut(s) 16, 52
Bst2UI CCWGG 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 8
BstC8I GCNNGC 3 cut(s) 46, 71, 170
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 2 cut(s) 19, 55
BstMBI GATC 2 cut(s) 16, 52
BstMWI GCNNNNNNNGC 2 cut(s) 169, 174
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 2 cut(s) 48, 77
BstSCI CCNGG 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 2 cut(s) 135, 211
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 1 cut(s) 223
Cac8I GCNNGC 3 cut(s) 46, 71, 170
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 133, 202
Csp6I GTAC 1 cut(s) 9
CviAII CATG 3 cut(s) 45, 58, 74
CviJI RGCY 7 cut(s) 98, 135, 153, 163, 199, 211, 219
CviKI_1 RGCY 7 cut(s) 98, 135, 153, 163, 199, 211, 219
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 213
DpnI GATC 2 cut(s) 18, 54
DpnII GATC 2 cut(s) 16, 52
Eco47I GGWCC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 46
FaeI CATG 3 cut(s) 48, 61, 77
FaiI YATR 3 cut(s) 46, 59, 75
FaqI GGGAC 1 cut(s) 188
FatI CATG 3 cut(s) 44, 57, 73
FokI GGATG 1 cut(s) 210
FspBI CTAG 1 cut(s) 150
HaeIII GGCC 2 cut(s) 135, 211
HapII CCGG 1 cut(s) 200
Hin1II CATG 3 cut(s) 48, 61, 77
HinfI GANTC 1 cut(s) 189
HpaII CCGG 1 cut(s) 200
HphI GGTGA 2 cut(s) 26, 73
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 174
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 3 cut(s) 48, 61, 77
Kzo9I GATC 2 cut(s) 16, 52
LpnPI CCDG 7 cut(s) 33, 35, 62, 83, 168, 182, 213
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 232
MalI GATC 2 cut(s) 18, 54
MboI GATC 2 cut(s) 16, 52
MboII GAAGA 1 cut(s) 137
MflI RGATCY 1 cut(s) 52
MluCI AATT 3 cut(s) 4, 113, 121
MnlI CCTC 3 cut(s) 124, 149, 222
Mph1103I ATGCAT 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 62
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 169, 174
NdeII GATC 2 cut(s) 16, 52
NlaIII CATG 3 cut(s) 48, 61, 77
NlaIV GGNNCC 1 cut(s) 204
NsiI ATGCAT 1 cut(s) 46
NspI RCATGY 2 cut(s) 48, 77
PaeI GCATGC 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 2 cut(s) 133, 202
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 1 cut(s) 90
Sau3AI GATC 2 cut(s) 16, 52
Sau96I GGNCC 2 cut(s) 133, 202
ScrFI CCNGG 1 cut(s) 50
SetI ASST 3 cut(s) 16, 141, 235
SfaNI GCATC 1 cut(s) 31
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 62
SphI GCATGC 1 cut(s) 48
Sse9I AATT 3 cut(s) 4, 113, 121
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 48
TaiI ACGT 1 cut(s) 235
TaqI TCGA 2 cut(s) 181, 187
TasI AATT 3 cut(s) 4, 113, 121
TatI WGTACW 1 cut(s) 8
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 17, 212
VpaK11BI GGWCC 1 cut(s) 202
XceI RCATGY 2 cut(s) 48, 77
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.