DNA-directed RNA polymerases I and III subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G29540 AT2G29540 AT2G29540 |
| fragaria_vesca | FvH4_6g26980 FvH4_7g06540 |
| malus_domestica | MD10G1078400.v1.1 |
| prunus_persica | Prupe.2G047700_v2.0.a1 Prupe.2G047700_v2.0.a1 Prupe.3G125300_v2.0.a1 Prupe.3G125300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0334971 RchiOBHm_Chr2g0128821 |
| rosa_laevigata | RLG00000019027 |
| rosa_multiflora | Rmu_sc0007061.1_g000007 Rmu_sc0009556.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00115240 Rroxscaffold_4G00316330 |
| rosa_rugosa | Rorug01G0118200 Rorug02G0281300 Rorug02G0281400 Rorug02G0281500 Rorug02G0281600 Rorug02G0281600 |
| rosa_samantha | Rh1AG141500 Rh1BG110000 Rh1CG133400 Rh1DG146100 Rh2AG334100 Rh2BG342100 Rh2CG321000 Rh2DG358800 |
| rosa_wichuraiana | Rw1G011740 Rw2G027000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 5 cut(s) | 17, 95, 108, 176, 225 |
| AcsI | RAATTY | 1 cut(s) | 113 |
| AfaI | GTAC | 1 cut(s) | 125 |
| AgsI | TTSAA | 4 cut(s) | 94, 202, 277, 311 |
| AlwI | GGATC | 5 cut(s) | 17, 95, 108, 176, 225 |
| ApoI | RAATTY | 1 cut(s) | 113 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 50, 82 |
| AspS9I | GGNCC | 1 cut(s) | 58 |
| AsuC2I | CCSGG | 1 cut(s) | 152 |
| AsuHPI | GGTGA | 2 cut(s) | 191, 238 |
| AvaII | GGWCC | 1 cut(s) | 58 |
| BamHI | GGATCC | 1 cut(s) | 100 |
| BccI | CCATC | 2 cut(s) | 148, 290 |
| BcnI | CCSGG | 1 cut(s) | 152 |
| BfmI | CTRYAG | 1 cut(s) | 174 |
| Bme1390I | CCNGG | 1 cut(s) | 152 |
| Bme18I | GGWCC | 1 cut(s) | 58 |
| BmgT120I | GGNCC | 1 cut(s) | 58 |
| BmiI | GGNNCC | 1 cut(s) | 102 |
| BmrFI | CCNGG | 1 cut(s) | 152 |
| BmsI | GCATC | 1 cut(s) | 196 |
| BpuMI | CCSGG | 1 cut(s) | 152 |
| BsaJI | CCNNGG | 1 cut(s) | 104 |
| BseDI | CCNNGG | 1 cut(s) | 104 |
| BseGI | GGATG | 2 cut(s) | 136, 301 |
| BseYI | CCCAGC | 1 cut(s) | 26 |
| BsiSI | CCGG | 1 cut(s) | 151 |
| BslFI | GGGAC | 1 cut(s) | 25 |
| BsmFI | GGGAC | 1 cut(s) | 25 |
| BsmI | GAATGC | 1 cut(s) | 129 |
| Bsp143I | GATC | 4 cut(s) | 22, 100, 181, 217 |
| BspLI | GGNNCC | 1 cut(s) | 102 |
| BspPI | GGATC | 5 cut(s) | 17, 95, 108, 176, 225 |
| BssECI | CCNNGG | 1 cut(s) | 104 |
| BssMI | GATC | 4 cut(s) | 22, 100, 181, 217 |
| BssT1I | CCWWGG | 1 cut(s) | 104 |
| BstC8I | GCNNGC | 1 cut(s) | 236 |
| BstF5I | GGATG | 2 cut(s) | 136, 301 |
| BstKTI | GATC | 4 cut(s) | 25, 103, 184, 220 |
| BstMBI | GATC | 4 cut(s) | 22, 100, 181, 217 |
| BstNSI | RCATGY | 2 cut(s) | 213, 242 |
| BstSCI | CCNGG | 1 cut(s) | 150 |
| BstSFI | CTRYAG | 1 cut(s) | 174 |
| BstX2I | RGATCY | 2 cut(s) | 100, 217 |
| BstYI | RGATCY | 2 cut(s) | 100, 217 |
| BtsCI | GGATG | 2 cut(s) | 136, 301 |
| Cac8I | GCNNGC | 1 cut(s) | 236 |
| Cfr13I | GGNCC | 1 cut(s) | 58 |
| Csp6I | GTAC | 1 cut(s) | 124 |
| CviAII | CATG | 4 cut(s) | 210, 223, 239, 301 |
| CviJI | RGCY | 2 cut(s) | 30, 263 |
| CviKI_1 | RGCY | 2 cut(s) | 30, 263 |
| CviQI | GTAC | 1 cut(s) | 124 |
| DpnI | GATC | 4 cut(s) | 24, 102, 183, 219 |
| DpnII | GATC | 4 cut(s) | 22, 100, 181, 217 |
| Eco130I | CCWWGG | 1 cut(s) | 104 |
| Eco47I | GGWCC | 1 cut(s) | 58 |
| EcoT14I | CCWWGG | 1 cut(s) | 104 |
| EcoT22I | ATGCAT | 1 cut(s) | 211 |
| ErhI | CCWWGG | 1 cut(s) | 104 |
| FaeI | CATG | 4 cut(s) | 213, 226, 242, 304 |
| FaiI | YATR | 4 cut(s) | 211, 224, 240, 302 |
| FaqI | GGGAC | 1 cut(s) | 25 |
| FatI | CATG | 4 cut(s) | 209, 222, 238, 300 |
| FokI | GGATG | 2 cut(s) | 123, 308 |
| GsaI | CCCAGC | 1 cut(s) | 30 |
| HapII | CCGG | 1 cut(s) | 151 |
| Hin1II | CATG | 4 cut(s) | 213, 226, 242, 304 |
| HinfI | GANTC | 3 cut(s) | 94, 165, 311 |
| HpaII | CCGG | 1 cut(s) | 151 |
| HphI | GGTGA | 2 cut(s) | 191, 238 |
| Hpy188I | TCNGA | 3 cut(s) | 22, 83, 145 |
| Hpy188III | TCNNGA | 3 cut(s) | 98, 169, 215 |
| HpyCH4V | TGCA | 2 cut(s) | 71, 209 |
| Hsp92II | CATG | 4 cut(s) | 213, 226, 242, 304 |
| Kzo9I | GATC | 4 cut(s) | 22, 100, 181, 217 |
| LpnPI | CCDG | 8 cut(s) | 40, 83, 162, 164, 182, 198, 200, 248 |
| LweI | GCATC | 1 cut(s) | 196 |
| MalI | GATC | 4 cut(s) | 24, 102, 183, 219 |
| MboI | GATC | 4 cut(s) | 22, 100, 181, 217 |
| MflI | RGATCY | 2 cut(s) | 100, 217 |
| MluCI | AATT | 1 cut(s) | 113 |
| MnlI | CCTC | 2 cut(s) | 49, 144 |
| Mph1103I | ATGCAT | 1 cut(s) | 211 |
| MseI | TTAA | 2 cut(s) | 156, 322 |
| MslI | CAYNNNNRTG | 1 cut(s) | 227 |
| MspI | CCGG | 1 cut(s) | 151 |
| MspR9I | CCNGG | 1 cut(s) | 152 |
| Mva1269I | GAATGC | 1 cut(s) | 129 |
| NciI | CCSGG | 1 cut(s) | 152 |
| NdeII | GATC | 4 cut(s) | 22, 100, 181, 217 |
| NlaIII | CATG | 4 cut(s) | 213, 226, 242, 304 |
| NlaIV | GGNNCC | 1 cut(s) | 102 |
| NsiI | ATGCAT | 1 cut(s) | 211 |
| NspI | RCATGY | 2 cut(s) | 213, 242 |
| PctI | GAATGC | 1 cut(s) | 129 |
| PfeI | GAWTC | 3 cut(s) | 94, 165, 311 |
| PspFI | CCCAGC | 1 cut(s) | 26 |
| PspN4I | GGNNCC | 1 cut(s) | 102 |
| PspPI | GGNCC | 1 cut(s) | 58 |
| PsuI | RGATCY | 2 cut(s) | 100, 217 |
| RsaI | GTAC | 1 cut(s) | 125 |
| RsaNI | GTAC | 1 cut(s) | 124 |
| RseI | CAYNNNNRTG | 1 cut(s) | 227 |
| SaqAI | TTAA | 2 cut(s) | 156, 322 |
| Sau3AI | GATC | 4 cut(s) | 22, 100, 181, 217 |
| Sau96I | GGNCC | 1 cut(s) | 58 |
| ScrFI | CCNGG | 1 cut(s) | 152 |
| SetI | ASST | 1 cut(s) | 181 |
| SfaNI | GCATC | 1 cut(s) | 196 |
| SfcI | CTRYAG | 1 cut(s) | 174 |
| SinI | GGWCC | 1 cut(s) | 58 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 227 |
| Sse9I | AATT | 1 cut(s) | 113 |
| SspI | AATATT | 1 cut(s) | 160 |
| StyD4I | CCNGG | 1 cut(s) | 150 |
| StyI | CCWWGG | 1 cut(s) | 104 |
| TasI | AATT | 1 cut(s) | 113 |
| TfiI | GAWTC | 3 cut(s) | 94, 165, 311 |
| Tru1I | TTAA | 2 cut(s) | 156, 322 |
| Tru9I | TTAA | 2 cut(s) | 156, 322 |
| VpaK11BI | GGWCC | 1 cut(s) | 58 |
| XapI | RAATTY | 1 cut(s) | 113 |
| XceI | RCATGY | 2 cut(s) | 213, 242 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 43 |
| Zsp2I | ATGCAT | 1 cut(s) | 211 |