Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007485

Physical Location & Seq

Genomic Coordinates Reverse (-)

24097954 .. 24098822

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G250900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGATCTAAATTCTAATTACCACTCCAAGGTGTGGTTGGTCAACGAAAATGTAATGGTCAACATGGGCATGGGACTCAGATGGATTCACACTATGCCTTCTGGAAATCAGAAATGGCCACCCACAAAGCATCATCTCACCACCTACAAATTTGAGCATGGAGCCCAAACCAAATCTGGGCCGTTGGCCTTGACACTGGCATGTAACCAAGCATTTGGATTGTGGGCCAAGGAATCCATATTTACATTTCAGGAGGTGGGGCTGGGGTCACCTGCTGTCCTTAGGATCAGTTTTCAACAGCGTGATCATGGAGACGGGAGCCTGTTTGATGGGCCGGGTAAGGTTTTGGCCCACAGATGGAAGGCTACACGTGGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

PG_binding_1 Peptidase_M10

Protein Analysis

127

Amino Acids

14.12

Weight (kDa)

9.51

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007485)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07981 FvH4_3g33581
malus_domestica	MD09G1072500.v1.1
prunus_persica	Prupe.3G250900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262451 RchiOBHm_Chr6g0262461
rosa_laevigata	RLG00000014425 RLG00000014426 RLG00000021518
rosa_multiflora	Rmu_sc0010005.1_g000001 Rmu_sc0020968.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434450 Rroxscaffold_7G00205250
rosa_rugosa	Rorug02G0513400
rosa_samantha	Rh2BG592900 Rh6AG118500 Rh6AG118600 Rh6BG112300 Rh6BG112500 Rh6CG110500 Rh6CG110600 Rh6DG100100 Rh6DG100300
rosa_wichuraiana	Rw0G008390 Rw6G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	280
Acc36I	ACCTGC	1 cut(s)	280
AccB7I	CCANNNNNTGG	1 cut(s)	33
AclWI	GGATC	2 cut(s)	12, 293
AcoI	YGGCCR	1 cut(s)	116
AcsI	RAATTY	2 cut(s)	10, 149
AcvI	CACGTG	1 cut(s)	371
AfiI	CCNNNNNNNGG	4 cut(s)	28, 33, 177, 357
AflIII	ACRYGT	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	2 cut(s)	12, 293
AoxI	GGCC	6 cut(s)	116, 179, 186, 225, 332, 348
ApoI	RAATTY	2 cut(s)	10, 149
AspS9I	GGNCC	4 cut(s)	179, 225, 332, 349
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	2 cut(s)	130, 261
AxyI	CCTNAGG	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	166
BbrPI	CACGTG	1 cut(s)	371
BccI	CCATC	3 cut(s)	75, 323, 351
BceAI	ACGGC	1 cut(s)	166
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	336
BmgT120I	GGNCC	4 cut(s)	179, 225, 332, 349
BmiI	GGNNCC	2 cut(s)	163, 320
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	2 cut(s)	139, 365
BpuMI	CCSGG	1 cut(s)	336
BsaAI	YACGTR	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	27, 228
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 33, 177, 357
Bse1I	ACTGG	1 cut(s)	201
Bse21I	CCTNAGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	27, 228
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	4 cut(s)	28, 33, 177, 357
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	201
BseYI	CCCAGC	1 cut(s)	262
BshFI	GGCC	6 cut(s)	118, 181, 188, 227, 334, 350
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	4 cut(s)	28, 33, 177, 357
BsmAI	GTCTC	1 cut(s)	306
BsmBI	CGTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	6 cut(s)	118, 181, 188, 227, 334, 350
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	3 cut(s)	4, 285, 304
BspANI	GGCC	6 cut(s)	118, 181, 188, 227, 334, 350
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	163, 320
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	2 cut(s)	12, 293
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	2 cut(s)	27, 228
BssMI	GATC	3 cut(s)	4, 285, 304
BssT1I	CCWWGG	2 cut(s)	27, 228
BstBAI	YACGTR	1 cut(s)	371
BstDEI	CTNAG	2 cut(s)	77, 281
BstEII	GGTNACC	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	380
BstKTI	GATC	3 cut(s)	7, 288, 307
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	3 cut(s)	4, 285, 304
BstNSI	RCATGY	1 cut(s)	204
BstPI	GGTNACC	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	281
BsuRI	GGCC	6 cut(s)	118, 181, 188, 227, 334, 350
BtsCI	GGATG	1 cut(s)	380
BtsIMutI	CAGTG	1 cut(s)	194
BveI	ACCTGC	1 cut(s)	280
Cfr13I	GGNCC	4 cut(s)	179, 225, 332, 349
CviAII	CATG	5 cut(s)	64, 70, 158, 201, 308
DdeI	CTNAG	2 cut(s)	77, 281
DpnI	GATC	3 cut(s)	6, 287, 306
DpnII	GATC	3 cut(s)	4, 285, 304
EaeI	YGGCCR	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	27, 228
Eco24I	GRGCYC	1 cut(s)	166
Eco72I	CACGTG	1 cut(s)	371
Eco81I	CCTNAGG	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	267
EcoO65I	GGTNACC	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	27, 228
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	2 cut(s)	27, 228
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	5 cut(s)	67, 73, 161, 204, 311
FaiI	YATR	7 cut(s)	65, 71, 95, 159, 202, 239, 309
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	5 cut(s)	63, 69, 157, 200, 307
FbaI	TGATCA	1 cut(s)	304
FriOI	GRGCYC	1 cut(s)	166
GsaI	CCCAGC	1 cut(s)	266
HaeIII	GGCC	6 cut(s)	118, 181, 188, 227, 334, 350
HapII	CCGG	1 cut(s)	335
Hin1II	CATG	5 cut(s)	67, 73, 161, 204, 311
HincII	GTYRAC	2 cut(s)	43, 61
HindII	GTYRAC	2 cut(s)	43, 61
HinfI	GANTC	3 cut(s)	75, 85, 233
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	2 cut(s)	130, 261
Hpy166II	GTNNAC	2 cut(s)	43, 61
Hpy188I	TCNGA	2 cut(s)	80, 111
Hpy188III	TCNNGA	2 cut(s)	102, 251
Hpy8I	GTNNAC	2 cut(s)	43, 61
HpyAV	CCTTC	2 cut(s)	108, 355
HpyCH4IV	ACGT	1 cut(s)	370
HpyF3I	CTNAG	2 cut(s)	77, 281
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	5 cut(s)	67, 73, 161, 204, 311
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	4, 285, 304
LmnI	GCTCC	2 cut(s)	161, 318
LpnPI	CCDG	8 cut(s)	87, 162, 182, 236, 248, 285, 335, 348
LweI	GCATC	2 cut(s)	139, 365
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	2 cut(s)	203, 267
MalI	GATC	3 cut(s)	6, 287, 306
MboI	GATC	3 cut(s)	4, 285, 304
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	166
MlsI	TGGCCA	1 cut(s)	118
MluCI	AATT	3 cut(s)	10, 16, 149
MluNI	TGGCCA	1 cut(s)	118
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	1 cut(s)	247
Mox20I	TGGCCA	1 cut(s)	118
MscI	TGGCCA	1 cut(s)	118
MslI	CAYNNNNRTG	3 cut(s)	68, 199, 373
Msp20I	TGGCCA	1 cut(s)	118
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	336
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	3 cut(s)	4, 285, 304
NlaIII	CATG	5 cut(s)	67, 73, 161, 204, 311
NlaIV	GGNNCC	2 cut(s)	163, 320
NmuCI	GTSAC	1 cut(s)	267
NspI	RCATGY	1 cut(s)	204
PaqCI	CACCTGC	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	85, 233
PflMI	CCANNNNNTGG	1 cut(s)	33
PleI	GAGTC	1 cut(s)	69
PmaCI	CACGTG	1 cut(s)	371
PmlI	CACGTG	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	69
Ppu21I	YACGTR	1 cut(s)	371
PspCI	CACGTG	1 cut(s)	371
PspEI	GGTNACC	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	163, 320
PspPI	GGNCC	4 cut(s)	179, 225, 332, 349
PsuI	RGATCY	1 cut(s)	4
RseI	CAYNNNNRTG	3 cut(s)	68, 199, 373
Sau3AI	GATC	3 cut(s)	4, 285, 304
Sau96I	GGNCC	4 cut(s)	179, 225, 332, 349
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	6 cut(s)	33, 146, 258, 274, 345, 373
SfaNI	GCATC	2 cut(s)	139, 365
SmiMI	CAYNNNNRTG	3 cut(s)	68, 199, 373
Sse9I	AATT	3 cut(s)	10, 16, 149
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	2 cut(s)	27, 228
TaiI	ACGT	1 cut(s)	373
TasI	AATT	3 cut(s)	10, 16, 149
TfiI	GAWTC	2 cut(s)	85, 233
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	267
Tsp45I	GTSAC	1 cut(s)	267
TspRI	CASTG	1 cut(s)	201
Van91I	CCANNNNNTGG	1 cut(s)	33
XapI	RAATTY	2 cut(s)	10, 149
XceI	RCATGY	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	2 cut(s)	34, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.