Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007485

Physical Location & Seq

Genomic Coordinates Forward (+)

12599670 .. 12601954

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG100100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTAGAAACATCATTTCCCAAATTGTTCTTGTAAGACCTTTACTTCCCCTTCTAGCAATTTTTGTGCAAGCTTTTACAGCAGCAGAGTCAATTCAAAATGGATCGATAGGGTGTGAAGAGGCATGGACCTACCTGAAGTCCTTTGGATACCTAACCGACACTGAAAATTATGATGATAAGGCTTTGGAATCGGCATTGAAAATACACCAGGAAACCTATCATTTGAATGTTACAGGAAAGCTTGATCCGGAAACCATCAACCTAATAACCACTCCCAGGTGTGGAGTTCCGGATCCAATTCTCGTCAATAGGTCACAGTCACGTGGTGTTTGGATCGGTTCATTTCATGTCCTTTTTAAACTTGGGGTAGAAAAATGGCCATCCACAAAGTACCATCTCACGTACAAAATCAACGGTGGAGCTCAAGCAAAAGTTGGAAATTATGCATTGTTGAATGCACTCAACTATGGATTCCAGCTATGGGCTAAGGTTTCCAAGTTTACGTTTCAACAGGTCGTACCAAGTTCCCCAGCTGACCTTTTGATCAGCTTTCAGAATGGAGATCATGGCGATAGAGACCTGTGGGAACATGGGGTTTTAGCGTACGCAAATCCTCCCACAGATGGGAGGTTGCATCTAAATGCCAGTATTGATTGGAGTTTTAGGCCACCCAGTCGGAACCAATTTGACTTGATATGGGTGGTTGCACATGAAATAGGTCACCTTCTTGGAATTGATCATAGTCAAAATACTAATGCCATTATGTACGCTCATGTTAGTCCAGGGAAGACCAGGAGGGCTTTGCATAGCGATGATATTGCTGCCATACATGCTATGTACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

PG_binding_1 Peptidase_M10

Protein Analysis

282

Amino Acids

31.52

Weight (kDa)

6.66

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PG_binding_1	PF01471	41 - 89	2.5e-08	Putative peptidoglycan binding domain
Peptidase_M10	PF00413	126 - 281	2e-33	Matrixin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007485)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07981 FvH4_3g33581
malus_domestica	MD09G1072500.v1.1
prunus_persica	Prupe.3G250900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262451 RchiOBHm_Chr6g0262461
rosa_laevigata	RLG00000014425 RLG00000014426 RLG00000021518
rosa_multiflora	Rmu_sc0010005.1_g000001 Rmu_sc0020968.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434450 Rroxscaffold_7G00205250
rosa_rugosa	Rorug02G0513400
rosa_samantha	Rh2BG592900 Rh6AG118500 Rh6AG118600 Rh6BG112300 Rh6BG112500 Rh6CG110500 Rh6CG110600 Rh6DG100100 Rh6DG100300
rosa_wichuraiana	Rw0G008390 Rw6G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	250, 292
AclWI	GGATC	5 cut(s)	112, 242, 290, 303, 344
AcoI	YGGCCR	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	158
AcvI	CACGTG	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	329
AfaI	GTAC	6 cut(s)	395, 407, 522, 608, 770, 842
AfiI	CCNNNNNNNGG	5 cut(s)	279, 284, 484, 626, 627
AgsI	TTSAA	5 cut(s)	98, 202, 229, 457, 512
AjnI	CCWGG	4 cut(s)	210, 278, 784, 794
AluBI	AGCT	6 cut(s)	74, 244, 425, 481, 536, 552
AluI	AGCT	6 cut(s)	74, 244, 425, 481, 536, 552
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	5 cut(s)	112, 242, 290, 303, 344
Aor13HI	TCCGGA	2 cut(s)	250, 292
AoxI	GGCC	2 cut(s)	380, 668
ApeKI	GCWGC	2 cut(s)	83, 824
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	382
BamHI	GGATCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	427
BbrPI	CACGTG	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	797
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	95, 811
BccI	CCATC	4 cut(s)	266, 391, 405, 620
BcgI	CGANNNNNNTGC	2 cut(s)	803, 837
BciT130I	CCWGG	4 cut(s)	212, 280, 786, 796
BciVI	GTATCC	1 cut(s)	143
BclI	TGATCA	2 cut(s)	546, 739
BcoDI	GTCTC	1 cut(s)	573
BfaI	CTAG	2 cut(s)	6, 56
BfuI	GTATCC	1 cut(s)	143
BisI	GCNGC	2 cut(s)	84, 825
BlsI	GCNGC	2 cut(s)	85, 826
Bme1390I	CCNGG	4 cut(s)	212, 280, 786, 796
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	297, 683
BmrFI	CCNGG	4 cut(s)	212, 280, 786, 796
BmrI	ACTGGG	1 cut(s)	669
BmsI	GCATC	1 cut(s)	646
BmuI	ACTGGG	1 cut(s)	669
BpiI	GAAGAC	1 cut(s)	797
Bpu10I	CCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	411
Bsa29I	ATCGAT	1 cut(s)	107
BsaAI	YACGTR	2 cut(s)	326, 405
BsaI	GGTCTC	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	278, 785
BsaWI	WCCGGW	2 cut(s)	250, 292
Bsc4I	CCNNNNNNNGG	5 cut(s)	279, 284, 484, 626, 627
Bse1I	ACTGG	2 cut(s)	648, 675
BseAI	TCCGGA	2 cut(s)	250, 292
BseBI	CCWGG	4 cut(s)	212, 280, 786, 796
BseCI	ATCGAT	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	278, 785
BseGI	GGATG	1 cut(s)	383
BseLI	CCNNNNNNNGG	5 cut(s)	279, 284, 484, 626, 627
BseNI	ACTGG	2 cut(s)	648, 675
BseXI	GCAGC	2 cut(s)	95, 811
BseYI	CCCAGC	1 cut(s)	532
BshFI	GGCC	2 cut(s)	382, 670
BshVI	ATCGAT	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	2 cut(s)	251, 293
BsiWI	CGTACG	1 cut(s)	606
BslI	CCNNNNNNNGG	5 cut(s)	279, 284, 484, 626, 627
BsmAI	GTCTC	1 cut(s)	573
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	382, 670
Bso31I	GGTCTC	1 cut(s)	573
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp13I	TCCGGA	2 cut(s)	250, 292
Bsp143I	GATC	7 cut(s)	104, 247, 295, 336, 546, 565, 739
BspANI	GGCC	2 cut(s)	382, 670
BspDI	ATCGAT	1 cut(s)	107
BspEI	TCCGGA	2 cut(s)	250, 292
BspLI	GGNNCC	2 cut(s)	297, 683
BspPI	GGATC	5 cut(s)	112, 242, 290, 303, 344
BspTNI	GGTCTC	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	648, 675
BssECI	CCNNGG	2 cut(s)	278, 785
BssMI	GATC	7 cut(s)	104, 247, 295, 336, 546, 565, 739
Bst2UI	CCWGG	4 cut(s)	212, 280, 786, 796
Bst4CI	ACNGT	2 cut(s)	321, 419
Bst6I	CTCTTC	1 cut(s)	114
BstBAI	YACGTR	2 cut(s)	326, 405
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	489, 846
BstEII	GGTNACC	1 cut(s)	722
BstF5I	GGATG	1 cut(s)	383
BstKTI	GATC	7 cut(s)	107, 250, 298, 339, 549, 568, 742
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	7 cut(s)	104, 247, 295, 336, 546, 565, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 833
BstNI	CCWGG	4 cut(s)	212, 280, 786, 796
BstNSI	RCATGY	1 cut(s)	836
BstPI	GGTNACC	1 cut(s)	722
BstSCI	CCNGG	4 cut(s)	210, 278, 784, 794
BstV1I	GCAGC	2 cut(s)	95, 811
BstV2I	GAAGAC	1 cut(s)	797
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
Bsu15I	ATCGAT	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	382, 670
BsuTUI	ATCGAT	1 cut(s)	107
BtgZI	GCGATG	1 cut(s)	828
BtsCI	GGATG	1 cut(s)	383
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	129
ClaI	ATCGAT	1 cut(s)	107
Csp6I	GTAC	6 cut(s)	394, 406, 521, 607, 769, 841
CviAII	CATG	7 cut(s)	126, 350, 569, 593, 713, 776, 833
CviQI	GTAC	6 cut(s)	394, 406, 521, 607, 769, 841
DdeI	CTNAG	2 cut(s)	489, 846
DpnI	GATC	7 cut(s)	106, 249, 297, 338, 548, 567, 741
DpnII	GATC	7 cut(s)	104, 247, 295, 336, 546, 565, 739
DraI	TTTAAA	1 cut(s)	361
DraIII	CACNNNGTG	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	380
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	427
Eco31I	GGTCTC	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	158
Eco72I	CACGTG	1 cut(s)	326
Eco91I	GGTNACC	1 cut(s)	722
EcoICRI	GAGCTC	1 cut(s)	425
EcoO65I	GGTNACC	1 cut(s)	722
EcoRII	CCWGG	4 cut(s)	210, 278, 784, 794
EcoT22I	ATGCAT	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	427
FaeI	CATG	7 cut(s)	129, 353, 572, 596, 716, 779, 836
FatI	CATG	7 cut(s)	125, 349, 568, 592, 712, 775, 832
FbaI	TGATCA	2 cut(s)	546, 739
Fnu4HI	GCNGC	2 cut(s)	84, 825
FokI	GGATG	1 cut(s)	370
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	2 cut(s)	84, 825
FspBI	CTAG	2 cut(s)	6, 56
GluI	GCNGC	2 cut(s)	84, 825
GsaI	CCCAGC	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	382, 670
HapII	CCGG	2 cut(s)	251, 293
Hin1II	CATG	7 cut(s)	129, 353, 572, 596, 716, 779, 836
HindIII	AAGCTT	2 cut(s)	72, 242
HinfI	GANTC	3 cut(s)	89, 191, 474
HpaII	CCGG	2 cut(s)	251, 293
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188I	TCNGA	2 cut(s)	558, 681
Hpy188III	TCNNGA	2 cut(s)	251, 293
Hpy8I	GTNNAC	1 cut(s)	504
HpyAV	CCTTC	2 cut(s)	62, 737
HpyCH4III	ACNGT	2 cut(s)	321, 419
HpyCH4IV	ACGT	3 cut(s)	325, 404, 506
HpyCH4V	TGCA	6 cut(s)	70, 449, 461, 637, 710, 808
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 833
HpyF3I	CTNAG	2 cut(s)	489, 846
HpySE526I	ACGT	3 cut(s)	325, 404, 506
Hsp92II	CATG	7 cut(s)	129, 353, 572, 596, 716, 779, 836
Kpn2I	TCCGGA	2 cut(s)	250, 292
Ksp22I	TGATCA	2 cut(s)	546, 739
Kzo9I	GATC	7 cut(s)	104, 247, 295, 336, 546, 565, 739
LmnI	GCTCC	1 cut(s)	422
Lsp1109I	GCAGC	2 cut(s)	95, 811
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	2 cut(s)	6, 56
MaeII	ACGT	3 cut(s)	325, 404, 506
MaeIII	GTNAC	4 cut(s)	232, 315, 321, 722
MalI	GATC	7 cut(s)	106, 249, 297, 338, 548, 567, 741
MboI	GATC	7 cut(s)	104, 247, 295, 336, 546, 565, 739
MboII	GAAGA	2 cut(s)	131, 802
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	427
MlsI	TGGCCA	1 cut(s)	382
MluCI	AATT	8 cut(s)	24, 60, 93, 169, 300, 442, 686, 735
MluNI	TGGCCA	1 cut(s)	382
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	2 cut(s)	418, 659
MnlI	CCTC	4 cut(s)	115, 624, 627, 792
Mox20I	TGGCCA	1 cut(s)	382
Mph1103I	ATGCAT	1 cut(s)	451
MroI	TCCGGA	2 cut(s)	250, 292
MscI	TGGCCA	1 cut(s)	382
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	3 cut(s)	228, 642, 813
Msp20I	TGGCCA	1 cut(s)	382
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	2 cut(s)	251, 293
MspR9I	CCNGG	4 cut(s)	212, 280, 786, 796
Mva1269I	GAATGC	1 cut(s)	463
MvaI	CCWGG	4 cut(s)	212, 280, 786, 796
MwoI	GCNNNNNNNGC	2 cut(s)	80, 833
NdeII	GATC	7 cut(s)	104, 247, 295, 336, 546, 565, 739
NlaIII	CATG	7 cut(s)	129, 353, 572, 596, 716, 779, 836
NlaIV	GGNNCC	2 cut(s)	297, 683
NmuCI	GTSAC	3 cut(s)	315, 321, 722
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	1 cut(s)	836
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	191, 474
Pfl23II	CGTACG	1 cut(s)	606
PkrI	GCNGC	2 cut(s)	85, 826
PleI	GAGTC	1 cut(s)	97
PmaCI	CACGTG	1 cut(s)	326
PmlI	CACGTG	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	97
Ppu21I	YACGTR	2 cut(s)	326, 405
Psp124BI	GAGCTC	1 cut(s)	427
Psp6I	CCWGG	4 cut(s)	210, 278, 784, 794
PspCI	CACGTG	1 cut(s)	326
PspEI	GGTNACC	1 cut(s)	722
PspFI	CCCAGC	1 cut(s)	532
PspGI	CCWGG	4 cut(s)	210, 278, 784, 794
PspLI	CGTACG	1 cut(s)	606
PspN4I	GGNNCC	2 cut(s)	297, 683
PspPI	GGNCC	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	6 cut(s)	395, 407, 522, 608, 770, 842
RsaNI	GTAC	6 cut(s)	394, 406, 521, 607, 769, 841
RseI	CAYNNNNRTG	3 cut(s)	228, 642, 813
SacI	GAGCTC	1 cut(s)	427
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	2 cut(s)	84, 825
Sau3AI	GATC	7 cut(s)	104, 247, 295, 336, 546, 565, 739
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	4 cut(s)	212, 280, 786, 796
SduI	GDGCHC	1 cut(s)	427
SfaNI	GCATC	1 cut(s)	646
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	3 cut(s)	228, 642, 813
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	8 cut(s)	24, 60, 93, 169, 300, 442, 686, 735
SspMI	CTAG	2 cut(s)	6, 56
SstI	GAGCTC	1 cut(s)	427
StyD4I	CCNGG	4 cut(s)	210, 278, 784, 794
TaaI	ACNGT	2 cut(s)	321, 419
TaiI	ACGT	3 cut(s)	328, 407, 509
TaqI	TCGA	1 cut(s)	107
TasI	AATT	8 cut(s)	24, 60, 93, 169, 300, 442, 686, 735
TfiI	GAWTC	2 cut(s)	191, 474
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	3 cut(s)	315, 321, 722
TseI	GCWGC	2 cut(s)	83, 824
Tsp45I	GTSAC	3 cut(s)	315, 321, 722
TspDTI	ATGAA	3 cut(s)	333, 338, 729
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	129
XceI	RCATGY	1 cut(s)	836
XspI	CTAG	2 cut(s)	6, 56
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.