Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007485

Physical Location & Seq

Genomic Coordinates Forward (+)

12607784 .. 12608482

Gene Structure 699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG100300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGAGCTTTACTTCCCCGCCTAGCAATGCAGGCTTCAATAGCCGAGTCCCGTCAGTTGCATGAGGCCAAGGCGGCCATAGGGGTTGATGAGCTTGGAACCTACCTAAGAACCTTTGGATATCTTATGAAGGACTCCAATGATAAGCAGCAGCAGCAGCAGCTCTTGGAATCTGCACTAAAGATGTACCAGAAAACCTACCACTTAAATGTTACTGGAAAGCTCAATTCCGAAACAAAGGAACTGATAAACACTCCGCGACGTGGACTGCCTGATCATAATCTCATCAATGGTAGTGTTCAAATGGGTTCCTATCAAGCCTTCTTTAATCTTGGACCTACAAAATGGCCACCTACAATGTACCATCTCCCATACAGAATCTCTGCCAGAGATGAAACCCCAATTGGGAACGACGCTTTGGCTCAAGCATGTGCTCAGGCATTCGGATTATGGGCCTGTGTTTCCAACTTTACATTCACAAGCGTCGGACTAGACGCCCCCCATCAACTCGACATTAGCTTTCGTCGGGGTCAGCATCGACATGGGAAACCGTTTGATGGCATATTAAGGCATGCATTCTACCCCATGGCTGGACTTATGCATTTGGATGCAGATGAGAATTGGAGTTTGACACCGCCAAAATATGACCAATACGACTTAGTCGAGTATACCAGTACCCTTTGTTGTTCTTCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

PG_binding_1 Peptidase_M10

Protein Analysis

232

Amino Acids

26.09

Weight (kDa)

6.75

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PG_binding_1	PF01471	29 - 81	1.1e-07	Putative peptidoglycan binding domain
Peptidase_M10	PF00413	116 - 220	4.5e-16	Matrixin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007485)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07981 FvH4_3g33581
malus_domestica	MD09G1072500.v1.1
prunus_persica	Prupe.3G250900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0262451 RchiOBHm_Chr6g0262461
rosa_laevigata	RLG00000014425 RLG00000014426 RLG00000021518
rosa_multiflora	Rmu_sc0010005.1_g000001 Rmu_sc0020968.1_g000002
rosa_roxburghii	Rroxscaffold_177G00434450 Rroxscaffold_7G00205250
rosa_rugosa	Rorug02G0513400
rosa_samantha	Rh2BG592900 Rh6AG118500 Rh6AG118600 Rh6BG112300 Rh6BG112500 Rh6CG110500 Rh6CG110600 Rh6DG100100 Rh6DG100300
rosa_wichuraiana	Rw0G008390 Rw6G010240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	668
AccII	CGCG	1 cut(s)	259
AciI	CCGC	4 cut(s)	19, 74, 257, 635
AcoI	YGGCCR	2 cut(s)	75, 347
AcyI	GRCGYC	1 cut(s)	495
AfaI	GTAC	3 cut(s)	188, 362, 676
AfiI	CCNNNNNNNGG	4 cut(s)	263, 405, 557, 590
AgsI	TTSAA	2 cut(s)	39, 302
AjiI	CACGTC	1 cut(s)	263
AjuI	GAANNNNNNNTTGG	6 cut(s)	387, 401, 419, 433, 458, 490
AluBI	AGCT	5 cut(s)	8, 94, 163, 223, 519
AluI	AGCT	5 cut(s)	8, 94, 163, 223, 519
Alw21I	GWGCWC	1 cut(s)	436
AoxI	GGCC	4 cut(s)	66, 75, 347, 453
ApeKI	GCWGC	5 cut(s)	148, 151, 154, 157, 160
AspS9I	GGNCC	2 cut(s)	335, 453
AvaII	GGWCC	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	5 cut(s)	160, 163, 166, 169, 172
BccI	CCATC	3 cut(s)	372, 510, 551
BclI	TGATCA	1 cut(s)	274
BfaI	CTAG	2 cut(s)	23, 491
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	6 cut(s)	75, 149, 152, 155, 158, 161
BlsI	GCNGC	6 cut(s)	76, 150, 153, 156, 159, 162
Bme18I	GGWCC	1 cut(s)	335
BmgBI	CACGTC	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	335, 453
BmiI	GGNNCC	2 cut(s)	100, 310
BmsI	GCATC	2 cut(s)	544, 598
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	69, 585
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 405, 557, 590
Bse1I	ACTGG	2 cut(s)	220, 672
Bse3DI	GCAATG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	69, 585
BseGI	GGATG	1 cut(s)	613
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	4 cut(s)	263, 405, 557, 590
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	2 cut(s)	220, 672
BseXI	GCAGC	5 cut(s)	160, 163, 166, 169, 172
BsgI	GTGCAG	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	259
BshFI	GGCC	4 cut(s)	68, 77, 349, 455
BsiHKAI	GWGCWC	1 cut(s)	436
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	4 cut(s)	263, 405, 557, 590
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	2 cut(s)	440, 575
BsnI	GGCC	4 cut(s)	68, 77, 349, 455
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	274
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	4 cut(s)	19, 74, 257, 635
BspANI	GGCC	4 cut(s)	68, 77, 349, 455
BspCNI	CTCAG	1 cut(s)	448
BspFNI	CGCG	1 cut(s)	259
BspLI	GGNNCC	2 cut(s)	100, 310
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	220, 672
BssECI	CCNNGG	2 cut(s)	69, 585
BssMI	GATC	1 cut(s)	274
BssNAI	GTATAC	1 cut(s)	669
BssNI	GRCGYC	1 cut(s)	495
BssT1I	CCWWGG	2 cut(s)	69, 585
Bst1107I	GTATAC	1 cut(s)	669
Bst4CI	ACNGT	1 cut(s)	552
BstACI	GRCGYC	1 cut(s)	495
BstC8I	GCNNGC	2 cut(s)	33, 573
BstDEI	CTNAG	4 cut(s)	107, 435, 658, 696
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	613
BstFNI	CGCG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 41, 74, 154, 157, 160
BstNSI	RCATGY	2 cut(s)	432, 575
BstUI	CGCG	1 cut(s)	259
BstV1I	GCAGC	5 cut(s)	160, 163, 166, 169, 172
BstZ17I	GTATAC	1 cut(s)	669
BsuRI	GGCC	4 cut(s)	68, 77, 349, 455
BtgI	CCRYGG	1 cut(s)	585
BtrI	CACGTC	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	613
Cac8I	GCNNGC	2 cut(s)	33, 573
Cfr13I	GGNCC	2 cut(s)	335, 453
CseI	GACGC	3 cut(s)	422, 472, 503
Csp6I	GTAC	3 cut(s)	187, 361, 675
CviAII	CATG	5 cut(s)	62, 429, 542, 572, 586
CviQI	GTAC	3 cut(s)	187, 361, 675
DdeI	CTNAG	4 cut(s)	107, 435, 658, 696
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
EaeI	YGGCCR	2 cut(s)	75, 347
Eco130I	CCWWGG	2 cut(s)	69, 585
Eco32I	GATATC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	335
EcoRV	GATATC	1 cut(s)	122
EcoT14I	CCWWGG	2 cut(s)	69, 585
EcoT22I	ATGCAT	2 cut(s)	577, 603
ErhI	CCWWGG	2 cut(s)	69, 585
FaeI	CATG	5 cut(s)	65, 432, 545, 575, 589
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	5 cut(s)	61, 428, 541, 571, 585
FauI	CCCGC	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	668
Fnu4HI	GCNGC	6 cut(s)	75, 149, 152, 155, 158, 161
FokI	GGATG	1 cut(s)	620
Fsp4HI	GCNGC	6 cut(s)	75, 149, 152, 155, 158, 161
FspBI	CTAG	2 cut(s)	23, 491
GluI	GCNGC	6 cut(s)	75, 149, 152, 155, 158, 161
HaeIII	GGCC	4 cut(s)	68, 77, 349, 455
HgaI	GACGC	3 cut(s)	422, 472, 503
Hin1I	GRCGYC	1 cut(s)	495
Hin1II	CATG	5 cut(s)	65, 432, 545, 575, 589
HinfI	GANTC	4 cut(s)	47, 134, 170, 378
Hpy166II	GTNNAC	2 cut(s)	266, 669
Hpy188I	TCNGA	3 cut(s)	232, 446, 488
Hpy8I	GTNNAC	2 cut(s)	266, 669
Hpy99I	CGWCG	4 cut(s)	264, 416, 488, 528
HpyAV	CCTTC	2 cut(s)	124, 331
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	6 cut(s)	31, 61, 176, 575, 601, 611
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 41, 74, 154, 157, 160
HpyF3I	CTNAG	4 cut(s)	107, 435, 658, 696
HpySE526I	ACGT	1 cut(s)	262
Hsp92I	GRCGYC	1 cut(s)	495
Hsp92II	CATG	5 cut(s)	65, 432, 545, 575, 589
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	9 cut(s)	17, 201, 203, 285, 400, 422, 469, 576, 685
Lsp1109I	GCAGC	5 cut(s)	160, 163, 166, 169, 172
LweI	GCATC	2 cut(s)	544, 598
MaeI	CTAG	2 cut(s)	23, 491
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	1 cut(s)	681
MfeI	CAATTG	1 cut(s)	402
MhlI	GDGCHC	1 cut(s)	436
MlsI	TGGCCA	1 cut(s)	349
MluCI	AATT	3 cut(s)	226, 402, 619
MluNI	TGGCCA	1 cut(s)	349
MlyI	GAGTC	2 cut(s)	56, 128
MmeI	TCCRAC	2 cut(s)	466, 489
MnlI	CCTC	1 cut(s)	58
Mox20I	TGGCCA	1 cut(s)	349
Mph1103I	ATGCAT	2 cut(s)	577, 603
MscI	TGGCCA	1 cut(s)	349
MseI	TTAA	3 cut(s)	206, 327, 566
MslI	CAYNNNNRTG	3 cut(s)	207, 540, 606
Msp20I	TGGCCA	1 cut(s)	349
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	2 cut(s)	440, 575
MvnI	CGCG	1 cut(s)	259
MwoI	GCNNNNNNNGC	6 cut(s)	32, 41, 74, 154, 157, 160
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	5 cut(s)	65, 432, 545, 575, 589
NlaIV	GGNNCC	2 cut(s)	100, 310
NmeAIII	GCCGAG	1 cut(s)	70
NsiI	ATGCAT	2 cut(s)	577, 603
NspI	RCATGY	2 cut(s)	432, 575
PaeI	GCATGC	1 cut(s)	575
PcsI	WCGNNNNNNNCGW	1 cut(s)	660
PctI	GAATGC	2 cut(s)	440, 575
PfeI	GAWTC	2 cut(s)	170, 378
PflFI	GACNNNGTC	1 cut(s)	659
PkrI	GCNGC	6 cut(s)	76, 150, 153, 156, 159, 162
PleI	GAGTC	2 cut(s)	55, 128
PpsI	GAGTC	2 cut(s)	55, 128
PspN4I	GGNNCC	2 cut(s)	100, 310
PspPI	GGNCC	2 cut(s)	335, 453
PsyI	GACNNNGTC	1 cut(s)	659
RsaI	GTAC	3 cut(s)	188, 362, 676
RsaNI	GTAC	3 cut(s)	187, 361, 675
RseI	CAYNNNNRTG	3 cut(s)	207, 540, 606
SaqAI	TTAA	3 cut(s)	206, 327, 566
SatI	GCNGC	6 cut(s)	75, 149, 152, 155, 158, 161
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	2 cut(s)	335, 453
SchI	GAGTC	2 cut(s)	56, 128
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	2 cut(s)	544, 598
SfiI	GGCCNNNNNGGCC	1 cut(s)	74
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	3 cut(s)	207, 540, 606
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
SphI	GCATGC	1 cut(s)	575
Sse9I	AATT	3 cut(s)	226, 402, 619
SsiI	CCGC	4 cut(s)	19, 74, 257, 635
SspMI	CTAG	2 cut(s)	23, 491
StyI	CCWWGG	2 cut(s)	69, 585
TaaI	ACNGT	1 cut(s)	552
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	4 cut(s)	510, 538, 663, 692
TasI	AATT	3 cut(s)	226, 402, 619
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	170, 378
Tru1I	TTAA	3 cut(s)	206, 327, 566
Tru9I	TTAA	3 cut(s)	206, 327, 566
TseI	GCWGC	5 cut(s)	148, 151, 154, 157, 160
TspDTI	ATGAA	2 cut(s)	143, 408
Tth111I	GACNNNGTC	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	335
XceI	RCATGY	2 cut(s)	432, 575
XmiI	GTMKAC	1 cut(s)	668
XspI	CTAG	2 cut(s)	23, 491
Zsp2I	ATGCAT	2 cut(s)	577, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.