CarD-like/TRCF domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G02060 AT3G02060 AT3G02060 |
| fragaria_vesca | FvH4_6g54430 |
| malus_domestica | MD17G1004500.v1.1 |
| prunus_persica | Prupe.3G314900_v2.0.a1 |
| pyrus_communis | pycom111g00110 pycom17g00110 |
| rosa_chinensis | RchiOBHm_Chr2g0176681 |
| rosa_laevigata | RLG00000022435 |
| rosa_rugosa | Rorug02G0597500 |
| rosa_samantha | Rh2BG686000 Rh2CG649300 Rh2DG700200 |
| rosa_wichuraiana | Rw0G015680 Rw2G055390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1119, 2524 |
| Acc65I | GGTACC | 1 cut(s) | 1943 |
| AccB1I | GGYRCC | 2 cut(s) | 187, 1943 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 23, 720 |
| AccI | GTMKAC | 2 cut(s) | 483, 1098 |
| AccII | CGCG | 3 cut(s) | 91, 305, 581 |
| AciI | CCGC | 8 cut(s) | 305, 355, 404, 579, 581, 688, 943, 1789 |
| AclWI | GGATC | 1 cut(s) | 2486 |
| AcoI | YGGCCR | 1 cut(s) | 1504 |
| AcsI | RAATTY | 5 cut(s) | 34, 557, 1643, 2206, 2401 |
| AcuI | CTGAAG | 2 cut(s) | 999, 2298 |
| AcyI | GRCGYC | 3 cut(s) | 324, 811, 1281 |
| AdeI | CACNNNGTG | 1 cut(s) | 1655 |
| AfaI | GTAC | 6 cut(s) | 203, 413, 587, 1360, 1945, 2114 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 23, 278, 720, 1369, 2029 |
| AgeI | ACCGGT | 1 cut(s) | 1086 |
| AjnI | CCWGG | 1 cut(s) | 22 |
| Alw21I | GWGCWC | 1 cut(s) | 104 |
| Alw26I | GTCTC | 2 cut(s) | 668, 1855 |
| AlwI | GGATC | 1 cut(s) | 2486 |
| Ama87I | CYCGRG | 2 cut(s) | 95, 1892 |
| AoxI | GGCC | 6 cut(s) | 25, 636, 683, 1371, 1504, 1750 |
| ApeKI | GCWGC | 7 cut(s) | 180, 436, 1621, 1868, 2165, 2214, 2282 |
| ApoI | RAATTY | 5 cut(s) | 34, 557, 1643, 2206, 2401 |
| AsiGI | ACCGGT | 1 cut(s) | 1086 |
| Asp718I | GGTACC | 1 cut(s) | 1943 |
| AspLEI | GCGC | 1 cut(s) | 2214 |
| AspS9I | GGNCC | 5 cut(s) | 26, 684, 940, 1495, 2067 |
| AsuC2I | CCSGG | 4 cut(s) | 72, 96, 97, 1826 |
| AsuHPI | GGTGA | 6 cut(s) | 397, 436, 1667, 1967, 2387, 2432 |
| AvaI | CYCGRG | 2 cut(s) | 95, 1892 |
| AvaII | GGWCC | 3 cut(s) | 940, 1495, 2067 |
| BaeGI | GKGCMC | 1 cut(s) | 192 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1748, 1781 |
| BalI | TGGCCA | 1 cut(s) | 1506 |
| BanI | GGYRCC | 2 cut(s) | 187, 1943 |
| BanII | GRGCYC | 1 cut(s) | 873 |
| BbsI | GAAGAC | 2 cut(s) | 109, 583 |
| Bbv12I | GWGCWC | 1 cut(s) | 104 |
| BbvCI | CCTCAGC | 1 cut(s) | 285 |
| BbvI | GCAGC | 7 cut(s) | 167, 448, 1633, 1880, 2152, 2201, 2294 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 623, 657 |
| BciT130I | CCWGG | 1 cut(s) | 24 |
| BclI | TGATCA | 3 cut(s) | 880, 1846, 2422 |
| BcnI | CCSGG | 4 cut(s) | 72, 96, 97, 1826 |
| BcoDI | GTCTC | 2 cut(s) | 668, 1855 |
| BfaI | CTAG | 5 cut(s) | 471, 1140, 1395, 1625, 2447 |
| BfuAI | ACCTGC | 2 cut(s) | 1119, 2524 |
| BisI | GCNGC | 7 cut(s) | 181, 437, 1622, 1869, 2166, 2215, 2283 |
| BlpI | GCTNAGC | 1 cut(s) | 618 |
| BlsI | GCNGC | 7 cut(s) | 182, 438, 1623, 1870, 2167, 2216, 2284 |
| Bme1390I | CCNGG | 5 cut(s) | 24, 72, 96, 97, 1826 |
| Bme18I | GGWCC | 3 cut(s) | 940, 1495, 2067 |
| BmeT110I | CYCGRG | 2 cut(s) | 95, 1892 |
| BmgT120I | GGNCC | 5 cut(s) | 26, 684, 940, 1495, 2067 |
| BmiI | GGNNCC | 4 cut(s) | 189, 686, 1945, 2232 |
| BmrFI | CCNGG | 5 cut(s) | 24, 72, 96, 97, 1826 |
| BmsI | GCATC | 3 cut(s) | 457, 1381, 2181 |
| BpiI | GAAGAC | 2 cut(s) | 109, 583 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2222, 2254, 2451, 2483 |
| BpmI | CTGGAG | 3 cut(s) | 1877, 2147, 2203 |
| Bpu10I | CCTNAGC | 1 cut(s) | 285 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 618 |
| BpuEI | CTTGAG | 3 cut(s) | 142, 470, 1895 |
| BpuMI | CCSGG | 4 cut(s) | 72, 96, 97, 1826 |
| BsaAI | YACGTR | 1 cut(s) | 1358 |
| BsaHI | GRCGYC | 3 cut(s) | 324, 811, 1281 |
| BsaJI | CCNNGG | 9 cut(s) | 22, 71, 95, 579, 1498, 1635, 2028, 2136, 2241 |
| BsaWI | WCCGGW | 1 cut(s) | 1086 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 194, 224 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 23, 278, 720, 1369, 2029 |
| Bse118I | RCCGGY | 1 cut(s) | 1086 |
| Bse1I | ACTGG | 4 cut(s) | 714, 1384, 1860, 2069 |
| BseBI | CCWGG | 1 cut(s) | 24 |
| BseDI | CCNNGG | 9 cut(s) | 22, 71, 95, 579, 1498, 1635, 2028, 2136, 2241 |
| BseGI | GGATG | 4 cut(s) | 130, 1330, 1978, 2283 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 23, 278, 720, 1369, 2029 |
| BseMII | CTCAG | 8 cut(s) | 276, 472, 869, 1115, 2100, 2148, 2160, 2193 |
| BseNI | ACTGG | 4 cut(s) | 714, 1384, 1860, 2069 |
| BseRI | GAGGAG | 7 cut(s) | 252, 255, 258, 413, 477, 1169, 2287 |
| BseSI | GKGCMC | 1 cut(s) | 192 |
| BseXI | GCAGC | 7 cut(s) | 167, 448, 1633, 1880, 2152, 2201, 2294 |
| BseYI | CCCAGC | 1 cut(s) | 183 |
| Bsh1236I | CGCG | 3 cut(s) | 91, 305, 581 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1087 |
| BshFI | GGCC | 6 cut(s) | 27, 638, 685, 1373, 1506, 1752 |
| BshNI | GGYRCC | 2 cut(s) | 187, 1943 |
| BshTI | ACCGGT | 1 cut(s) | 1086 |
| BsiEI | CGRYCG | 1 cut(s) | 1087 |
| BsiHKAI | GWGCWC | 1 cut(s) | 104 |
| BsiHKCI | CYCGRG | 2 cut(s) | 95, 1892 |
| BsiSI | CCGG | 4 cut(s) | 71, 96, 1087, 1826 |
| BslFI | GGGAC | 6 cut(s) | 78, 314, 521, 1216, 1412, 1934 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 23, 278, 720, 1369, 2029 |
| BsmAI | GTCTC | 2 cut(s) | 668, 1855 |
| BsmFI | GGGAC | 6 cut(s) | 78, 314, 521, 1216, 1412, 1934 |
| BsmI | GAATGC | 2 cut(s) | 1717, 1886 |
| BsnI | GGCC | 6 cut(s) | 27, 638, 685, 1373, 1506, 1752 |
| BsoBI | CYCGRG | 2 cut(s) | 95, 1892 |
| Bsp1286I | GDGCHC | 3 cut(s) | 104, 192, 873 |
| Bsp1407I | TGTACA | 1 cut(s) | 201 |
| Bsp143I | GATC | 7 cut(s) | 880, 1846, 1993, 2287, 2422, 2427, 2478 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 618 |
| Bsp19I | CCATGG | 3 cut(s) | 1635, 2136, 2241 |
| BspACI | CCGC | 8 cut(s) | 305, 355, 404, 579, 581, 688, 943, 1789 |
| BspANI | GGCC | 6 cut(s) | 27, 638, 685, 1373, 1506, 1752 |
| BspCNI | CTCAG | 8 cut(s) | 277, 471, 868, 1116, 2101, 2149, 2161, 2194 |
| BspFNI | CGCG | 3 cut(s) | 91, 305, 581 |
| BspLI | GGNNCC | 4 cut(s) | 189, 686, 1945, 2232 |
| BspMI | ACCTGC | 2 cut(s) | 1119, 2524 |
| BspPI | GGATC | 1 cut(s) | 2486 |
| BspQI | GCTCTTC | 1 cut(s) | 1260 |
| BspT107I | GGYRCC | 2 cut(s) | 187, 1943 |
| BsrFI | RCCGGY | 1 cut(s) | 1086 |
| BsrGI | TGTACA | 1 cut(s) | 201 |
| BsrI | ACTGG | 4 cut(s) | 714, 1384, 1860, 2069 |
| BssAI | RCCGGY | 1 cut(s) | 1086 |
| BssECI | CCNNGG | 9 cut(s) | 22, 71, 95, 579, 1498, 1635, 2028, 2136, 2241 |
| BssMI | GATC | 7 cut(s) | 880, 1846, 1993, 2287, 2422, 2427, 2478 |
| BssNI | GRCGYC | 3 cut(s) | 324, 811, 1281 |
| BssT1I | CCWWGG | 4 cut(s) | 1635, 2028, 2136, 2241 |
| Bst2UI | CCWGG | 1 cut(s) | 24 |
| Bst4CI | ACNGT | 5 cut(s) | 385, 1457, 1569, 1761, 2045 |
| Bst6I | CTCTTC | 5 cut(s) | 45, 160, 501, 1260, 2003 |
| BstACI | GRCGYC | 3 cut(s) | 324, 811, 1281 |
| BstAUI | TGTACA | 1 cut(s) | 201 |
| BstBAI | YACGTR | 1 cut(s) | 1358 |
| BstC8I | GCNNGC | 5 cut(s) | 104, 636, 647, 993, 1791 |
| BstDEI | CTNAG | 9 cut(s) | 285, 458, 618, 855, 1124, 2109, 2157, 2169, 2202 |
| BstDSI | CCRYGG | 4 cut(s) | 579, 1635, 2136, 2241 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2027 |
| BstF5I | GGATG | 4 cut(s) | 130, 1330, 1978, 2283 |
| BstFNI | CGCG | 3 cut(s) | 91, 305, 581 |
| BstHHI | GCGC | 1 cut(s) | 2214 |
| BstKTI | GATC | 7 cut(s) | 883, 1849, 1996, 2290, 2425, 2430, 2481 |
| BstMAI | GTCTC | 2 cut(s) | 668, 1855 |
| BstMBI | GATC | 7 cut(s) | 880, 1846, 1993, 2287, 2422, 2427, 2478 |
| BstMCI | CGRYCG | 1 cut(s) | 1087 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 311, 436, 445, 454, 696, 705, 992, 2162 |
| BstNI | CCWGG | 1 cut(s) | 24 |
| BstSCI | CCNGG | 5 cut(s) | 22, 70, 94, 95, 1824 |
| BstSLI | GKGCMC | 1 cut(s) | 192 |
| BstUI | CGCG | 3 cut(s) | 91, 305, 581 |
| BstV1I | GCAGC | 7 cut(s) | 167, 448, 1633, 1880, 2152, 2201, 2294 |
| BstV2I | GAAGAC | 2 cut(s) | 109, 583 |
| BstX2I | RGATCY | 1 cut(s) | 2478 |
| BstYI | RGATCY | 1 cut(s) | 2478 |
| BsuRI | GGCC | 6 cut(s) | 27, 638, 685, 1373, 1506, 1752 |
| BtgI | CCRYGG | 4 cut(s) | 579, 1635, 2136, 2241 |
| BtsCI | GGATG | 4 cut(s) | 130, 1330, 1978, 2283 |
| BtsI | GCAGTG | 2 cut(s) | 269, 321 |
| BtsIMutI | CAGTG | 5 cut(s) | 269, 321, 721, 1326, 1853 |
| BveI | ACCTGC | 2 cut(s) | 1119, 2524 |
| Cac8I | GCNNGC | 5 cut(s) | 104, 636, 647, 993, 1791 |
| CfoI | GCGC | 1 cut(s) | 2214 |
| Cfr10I | RCCGGY | 1 cut(s) | 1086 |
| Cfr13I | GGNCC | 5 cut(s) | 26, 684, 940, 1495, 2067 |
| Cfr42I | CCGCGG | 1 cut(s) | 582 |
| Cfr9I | CCCGGG | 1 cut(s) | 95 |
| CseI | GACGC | 7 cut(s) | 80, 262, 268, 311, 332, 819, 1270 |
| Csp6I | GTAC | 6 cut(s) | 202, 412, 586, 1359, 1944, 2113 |
| CspAI | ACCGGT | 1 cut(s) | 1086 |
| CviQI | GTAC | 6 cut(s) | 202, 412, 586, 1359, 1944, 2113 |
| DdeI | CTNAG | 9 cut(s) | 285, 458, 618, 855, 1124, 2109, 2157, 2169, 2202 |
| DpnI | GATC | 7 cut(s) | 882, 1848, 1995, 2289, 2424, 2429, 2480 |
| DpnII | GATC | 7 cut(s) | 880, 1846, 1993, 2287, 2422, 2427, 2478 |
| DraI | TTTAAA | 1 cut(s) | 2256 |
| DraIII | CACNNNGTG | 1 cut(s) | 1655 |
| EaeI | YGGCCR | 1 cut(s) | 1504 |
| Eam1104I | CTCTTC | 5 cut(s) | 45, 160, 501, 1260, 2003 |
| EarI | CTCTTC | 5 cut(s) | 45, 160, 501, 1260, 2003 |
| EciI | GGCGGA | 1 cut(s) | 419 |
| Eco130I | CCWWGG | 4 cut(s) | 1635, 2028, 2136, 2241 |
| Eco147I | AGGCCT | 1 cut(s) | 638 |
| Eco24I | GRGCYC | 1 cut(s) | 873 |
| Eco32I | GATATC | 1 cut(s) | 2179 |
| Eco47I | GGWCC | 3 cut(s) | 940, 1495, 2067 |
| Eco57I | CTGAAG | 2 cut(s) | 999, 2298 |
| Eco88I | CYCGRG | 2 cut(s) | 95, 1892 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2027 |
| EcoO109I | RGGNCCY | 1 cut(s) | 684 |
| EcoRII | CCWGG | 1 cut(s) | 22 |
| EcoRV | GATATC | 1 cut(s) | 2179 |
| EcoT14I | CCWWGG | 4 cut(s) | 1635, 2028, 2136, 2241 |
| EcoT38I | GRGCYC | 1 cut(s) | 873 |
| ErhI | CCWWGG | 4 cut(s) | 1635, 2028, 2136, 2241 |
| FaqI | GGGAC | 6 cut(s) | 78, 314, 521, 1216, 1412, 1934 |
| FauI | CCCGC | 3 cut(s) | 348, 695, 1782 |
| FbaI | TGATCA | 3 cut(s) | 880, 1846, 2422 |
| FblI | GTMKAC | 2 cut(s) | 483, 1098 |
| Fnu4HI | GCNGC | 7 cut(s) | 181, 437, 1622, 1869, 2166, 2215, 2283 |
| FokI | GGATG | 4 cut(s) | 117, 1337, 1985, 2290 |
| FriOI | GRGCYC | 1 cut(s) | 873 |
| Fsp4HI | GCNGC | 7 cut(s) | 181, 437, 1622, 1869, 2166, 2215, 2283 |
| FspBI | CTAG | 5 cut(s) | 471, 1140, 1395, 1625, 2447 |
| GlaI | GCGC | 1 cut(s) | 2213 |
| GluI | GCNGC | 7 cut(s) | 181, 437, 1622, 1869, 2166, 2215, 2283 |
| GsaI | CCCAGC | 1 cut(s) | 187 |
| GsuI | CTGGAG | 3 cut(s) | 1877, 2147, 2203 |
| HaeIII | GGCC | 6 cut(s) | 27, 638, 685, 1373, 1506, 1752 |
| HapII | CCGG | 4 cut(s) | 71, 96, 1087, 1826 |
| HgaI | GACGC | 7 cut(s) | 80, 262, 268, 311, 332, 819, 1270 |
| HhaI | GCGC | 1 cut(s) | 2214 |
| Hin1I | GRCGYC | 3 cut(s) | 324, 811, 1281 |
| Hin6I | GCGC | 1 cut(s) | 2212 |
| HinP1I | GCGC | 1 cut(s) | 2212 |
| HincII | GTYRAC | 1 cut(s) | 484 |
| HindII | GTYRAC | 1 cut(s) | 484 |
| HindIII | AAGCTT | 1 cut(s) | 620 |
| HpaII | CCGG | 4 cut(s) | 71, 96, 1087, 1826 |
| HphI | GGTGA | 6 cut(s) | 397, 436, 1667, 1967, 2387, 2432 |
| Hpy188III | TCNNGA | 9 cut(s) | 121, 1562, 1663, 1733, 1874, 2126, 2150, 2182, 2316 |
| Hpy99I | CGWCG | 4 cut(s) | 256, 326, 518, 566 |
| HpyAV | CCTTC | 8 cut(s) | 23, 39, 137, 291, 520, 1773, 2115, 2221 |
| HpyCH4III | ACNGT | 5 cut(s) | 385, 1457, 1569, 1761, 2045 |
| HpyCH4IV | ACGT | 4 cut(s) | 513, 564, 588, 1357 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 311, 436, 445, 454, 696, 705, 992, 2162 |
| HpyF3I | CTNAG | 9 cut(s) | 285, 458, 618, 855, 1124, 2109, 2157, 2169, 2202 |
| HpySE526I | ACGT | 4 cut(s) | 513, 564, 588, 1357 |
| Hsp92I | GRCGYC | 3 cut(s) | 324, 811, 1281 |
| HspAI | GCGC | 1 cut(s) | 2212 |
| KpnI | GGTACC | 1 cut(s) | 1947 |
| Ksp22I | TGATCA | 3 cut(s) | 880, 1846, 2422 |
| KspI | CCGCGG | 1 cut(s) | 582 |
| Kzo9I | GATC | 7 cut(s) | 880, 1846, 1993, 2287, 2422, 2427, 2478 |
| LguI | GCTCTTC | 1 cut(s) | 1260 |
| LmnI | GCTCC | 5 cut(s) | 15, 99, 358, 1156, 2230 |
| Lsp1109I | GCAGC | 7 cut(s) | 167, 448, 1633, 1880, 2152, 2201, 2294 |
| LweI | GCATC | 3 cut(s) | 457, 1381, 2181 |
| MaeI | CTAG | 5 cut(s) | 471, 1140, 1395, 1625, 2447 |
| MaeII | ACGT | 4 cut(s) | 513, 564, 588, 1357 |
| MaeIII | GTNAC | 2 cut(s) | 473, 1833 |
| MalI | GATC | 7 cut(s) | 882, 1848, 1995, 2289, 2424, 2429, 2480 |
| MboI | GATC | 7 cut(s) | 880, 1846, 1993, 2287, 2422, 2427, 2478 |
| MflI | RGATCY | 1 cut(s) | 2478 |
| MhlI | GDGCHC | 3 cut(s) | 104, 192, 873 |
| MlsI | TGGCCA | 1 cut(s) | 1506 |
| MluNI | TGGCCA | 1 cut(s) | 1506 |
| MlyI | GAGTC | 6 cut(s) | 123, 386, 792, 835, 1198, 1434 |
| MmeI | TCCRAC | 5 cut(s) | 27, 1096, 1107, 1930, 1957 |
| Mox20I | TGGCCA | 1 cut(s) | 1506 |
| MscI | TGGCCA | 1 cut(s) | 1506 |
| MseI | TTAA | 7 cut(s) | 555, 630, 947, 1173, 1482, 1533, 2255 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1071 |
| Msp20I | TGGCCA | 1 cut(s) | 1506 |
| MspA1I | CMGCKG | 1 cut(s) | 581 |
| MspI | CCGG | 4 cut(s) | 71, 96, 1087, 1826 |
| MspR9I | CCNGG | 5 cut(s) | 24, 72, 96, 97, 1826 |
| Mva1269I | GAATGC | 2 cut(s) | 1717, 1886 |
| MvaI | CCWGG | 1 cut(s) | 24 |
| MvnI | CGCG | 3 cut(s) | 91, 305, 581 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 311, 436, 445, 454, 696, 705, 992, 2162 |
| NciI | CCSGG | 4 cut(s) | 72, 96, 97, 1826 |
| NcoI | CCATGG | 3 cut(s) | 1635, 2136, 2241 |
| NdeII | GATC | 7 cut(s) | 880, 1846, 1993, 2287, 2422, 2427, 2478 |
| NlaIV | GGNNCC | 4 cut(s) | 189, 686, 1945, 2232 |
| NmuCI | GTSAC | 1 cut(s) | 1833 |
| PceI | AGGCCT | 1 cut(s) | 638 |
| PciSI | GCTCTTC | 1 cut(s) | 1260 |
| PctI | GAATGC | 2 cut(s) | 1717, 1886 |
| PfeI | GAWTC | 6 cut(s) | 543, 1666, 1929, 2131, 2248, 2375 |
| PflFI | GACNNNGTC | 1 cut(s) | 512 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 23, 720 |
| PinAI | ACCGGT | 1 cut(s) | 1086 |
| PkrI | GCNGC | 7 cut(s) | 182, 438, 1623, 1870, 2167, 2216, 2284 |
| PleI | GAGTC | 6 cut(s) | 122, 386, 792, 835, 1198, 1433 |
| PpsI | GAGTC | 6 cut(s) | 122, 386, 792, 835, 1198, 1433 |
| Ppu21I | YACGTR | 1 cut(s) | 1358 |
| Psp6I | CCWGG | 1 cut(s) | 22 |
| PspFI | CCCAGC | 1 cut(s) | 183 |
| PspGI | CCWGG | 1 cut(s) | 22 |
| PspN4I | GGNNCC | 4 cut(s) | 189, 686, 1945, 2232 |
| PspPI | GGNCC | 5 cut(s) | 26, 684, 940, 1495, 2067 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2040, 2072 |
| PsuI | RGATCY | 1 cut(s) | 2478 |
| PsyI | GACNNNGTC | 1 cut(s) | 512 |
| RsaI | GTAC | 6 cut(s) | 203, 413, 587, 1360, 1945, 2114 |
| RsaNI | GTAC | 6 cut(s) | 202, 412, 586, 1359, 1944, 2113 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1071 |
| SacII | CCGCGG | 1 cut(s) | 582 |
| SalI | GTCGAC | 1 cut(s) | 482 |
| SapI | GCTCTTC | 1 cut(s) | 1260 |
| SaqAI | TTAA | 7 cut(s) | 555, 630, 947, 1173, 1482, 1533, 2255 |
| SatI | GCNGC | 7 cut(s) | 181, 437, 1622, 1869, 2166, 2215, 2283 |
| Sau3AI | GATC | 7 cut(s) | 880, 1846, 1993, 2287, 2422, 2427, 2478 |
| Sau96I | GGNCC | 5 cut(s) | 26, 684, 940, 1495, 2067 |
| SchI | GAGTC | 6 cut(s) | 123, 386, 792, 835, 1198, 1434 |
| ScrFI | CCNGG | 5 cut(s) | 24, 72, 96, 97, 1826 |
| SduI | GDGCHC | 3 cut(s) | 104, 192, 873 |
| SfaNI | GCATC | 3 cut(s) | 457, 1381, 2181 |
| Sfr303I | CCGCGG | 1 cut(s) | 582 |
| SgrBI | CCGCGG | 1 cut(s) | 582 |
| SinI | GGWCC | 3 cut(s) | 940, 1495, 2067 |
| SmaI | CCCGGG | 1 cut(s) | 97 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1071 |
| SmlI | CTYRAG | 3 cut(s) | 121, 449, 1874 |
| SmoI | CTYRAG | 3 cut(s) | 121, 449, 1874 |
| SseBI | AGGCCT | 1 cut(s) | 638 |
| SsiI | CCGC | 8 cut(s) | 305, 355, 404, 579, 581, 688, 943, 1789 |
| SspI | AATATT | 1 cut(s) | 1613 |
| SspMI | CTAG | 5 cut(s) | 471, 1140, 1395, 1625, 2447 |
| StuI | AGGCCT | 1 cut(s) | 638 |
| StyD4I | CCNGG | 5 cut(s) | 22, 70, 94, 95, 1824 |
| StyI | CCWWGG | 4 cut(s) | 1635, 2028, 2136, 2241 |
| TaaI | ACNGT | 5 cut(s) | 385, 1457, 1569, 1761, 2045 |
| TaiI | ACGT | 4 cut(s) | 516, 567, 591, 1360 |
| TaqI | TCGA | 4 cut(s) | 251, 483, 541, 561 |
| TaqII | GACCGA | 1 cut(s) | 1512 |
| TatI | WGTACW | 3 cut(s) | 201, 411, 2112 |
| TfiI | GAWTC | 6 cut(s) | 543, 1666, 1929, 2131, 2248, 2375 |
| Tru1I | TTAA | 7 cut(s) | 555, 630, 947, 1173, 1482, 1533, 2255 |
| Tru9I | TTAA | 7 cut(s) | 555, 630, 947, 1173, 1482, 1533, 2255 |
| TscAI | CASTG | 5 cut(s) | 269, 321, 721, 1326, 1860 |
| TseFI | GTSAC | 1 cut(s) | 1833 |
| TseI | GCWGC | 7 cut(s) | 180, 436, 1621, 1868, 2165, 2214, 2282 |
| Tsp45I | GTSAC | 1 cut(s) | 1833 |
| TspDTI | ATGAA | 9 cut(s) | 119, 583, 886, 1278, 1296, 2052, 2348, 2360, 2492 |
| TspGWI | ACGGA | 2 cut(s) | 1376, 2059 |
| TspMI | CCCGGG | 1 cut(s) | 95 |
| TspRI | CASTG | 5 cut(s) | 269, 321, 721, 1326, 1860 |
| Tth111I | GACNNNGTC | 1 cut(s) | 512 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 23, 720 |
| VpaK11BI | GGWCC | 3 cut(s) | 940, 1495, 2067 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2027 |
| XapI | RAATTY | 5 cut(s) | 34, 557, 1643, 2206, 2401 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 760 |
| XmaI | CCCGGG | 1 cut(s) | 95 |
| XmiI | GTMKAC | 2 cut(s) | 483, 1098 |
| XspI | CTAG | 5 cut(s) | 471, 1140, 1395, 1625, 2447 |