CarD-like/TRCF domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G02060 AT3G02060 AT3G02060 |
| fragaria_vesca | FvH4_6g54430 |
| malus_domestica | MD17G1004500.v1.1 |
| prunus_persica | Prupe.3G314900_v2.0.a1 |
| pyrus_communis | pycom111g00110 pycom17g00110 |
| rosa_chinensis | RchiOBHm_Chr2g0176681 |
| rosa_laevigata | RLG00000022435 |
| rosa_rugosa | Rorug02G0597500 |
| rosa_samantha | Rh2BG686000 Rh2CG649300 Rh2DG700200 |
| rosa_wichuraiana | Rw0G015680 Rw2G055390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 965 |
| Acc36I | ACCTGC | 1 cut(s) | 357 |
| Acc65I | GGTACC | 1 cut(s) | 1181 |
| AccB1I | GGYRCC | 1 cut(s) | 1181 |
| AccII | CGCG | 1 cut(s) | 595 |
| AciI | CCGC | 5 cut(s) | 181, 593, 1012, 1151, 1450 |
| AclI | AACGTT | 1 cut(s) | 351 |
| AcoI | YGGCCR | 1 cut(s) | 742 |
| AcsI | RAATTY | 3 cut(s) | 881, 1444, 1639 |
| AcuI | CTGAAG | 1 cut(s) | 237 |
| AcyI | GRCGYC | 2 cut(s) | 519, 1453 |
| AdeI | CACNNNGTG | 2 cut(s) | 230, 893 |
| AfaI | GTAC | 3 cut(s) | 1183, 1352, 1769 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1150, 1669 |
| AflIII | ACRYGT | 1 cut(s) | 1591 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 407, 439, 498, 530 |
| Alw26I | GTCTC | 2 cut(s) | 189, 1093 |
| Ama87I | CYCGRG | 1 cut(s) | 1364 |
| AoxI | GGCC | 3 cut(s) | 484, 742, 988 |
| ApeKI | GCWGC | 6 cut(s) | 859, 1009, 1106, 1198, 1403, 1520 |
| ApoI | RAATTY | 3 cut(s) | 881, 1444, 1639 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 188, 220 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1680 |
| Asp718I | GGTACC | 1 cut(s) | 1181 |
| AspS9I | GGNCC | 2 cut(s) | 178, 1305 |
| AsuHPI | GGTGA | 3 cut(s) | 905, 1205, 1670 |
| AsuNHI | GCTAGC | 1 cut(s) | 632 |
| AvaI | CYCGRG | 1 cut(s) | 1364 |
| AvaII | GGWCC | 2 cut(s) | 178, 1305 |
| AxyI | CCTNAGG | 1 cut(s) | 253 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 986, 1019 |
| BalI | TGGCCA | 1 cut(s) | 744 |
| BanI | GGYRCC | 1 cut(s) | 1181 |
| BbvI | GCAGC | 6 cut(s) | 871, 996, 1118, 1210, 1390, 1532 |
| BccI | CCATC | 4 cut(s) | 242, 784, 1193, 1555 |
| BclI | TGATCA | 2 cut(s) | 118, 1084 |
| BcoDI | GTCTC | 2 cut(s) | 189, 1093 |
| BfaI | CTAG | 6 cut(s) | 401, 482, 633, 863, 992, 1771 |
| BfmI | CTRYAG | 1 cut(s) | 1404 |
| BfuAI | ACCTGC | 1 cut(s) | 357 |
| BisI | GCNGC | 7 cut(s) | 860, 1010, 1107, 1199, 1404, 1451, 1521 |
| BlsI | GCNGC | 7 cut(s) | 861, 1011, 1108, 1200, 1405, 1452, 1522 |
| BmcAI | AGTACT | 1 cut(s) | 1769 |
| Bme18I | GGWCC | 2 cut(s) | 178, 1305 |
| BmeT110I | CYCGRG | 1 cut(s) | 1364 |
| BmgT120I | GGNCC | 2 cut(s) | 178, 1305 |
| BmiI | GGNNCC | 2 cut(s) | 1183, 1470 |
| BmrI | ACTGGG | 1 cut(s) | 1215 |
| BmsI | GCATC | 4 cut(s) | 406, 619, 1288, 1419 |
| BmtI | GCTAGC | 1 cut(s) | 636 |
| BmuI | ACTGGG | 1 cut(s) | 1215 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 154, 186, 1460, 1492, 1689, 1721 |
| BpmI | CTGGAG | 2 cut(s) | 639, 1441 |
| BpuEI | CTTGAG | 1 cut(s) | 1133 |
| BsaBI | GATNNNNATC | 2 cut(s) | 396, 1278 |
| BsaHI | GRCGYC | 2 cut(s) | 519, 1453 |
| BsaJI | CCNNGG | 5 cut(s) | 75, 267, 873, 1374, 1479 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 37, 67, 637, 667 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1150, 1669 |
| Bse1I | ACTGG | 4 cut(s) | 622, 1210, 1307, 1718 |
| Bse21I | CCTNAGG | 1 cut(s) | 253 |
| Bse8I | GATNNNNATC | 2 cut(s) | 396, 1278 |
| BseDI | CCNNGG | 5 cut(s) | 75, 267, 873, 1374, 1479 |
| BseGI | GGATG | 2 cut(s) | 979, 1216 |
| BseJI | GATNNNNATC | 2 cut(s) | 396, 1278 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1150, 1669 |
| BseMII | CTCAG | 5 cut(s) | 107, 267, 1338, 1386, 1431 |
| BseNI | ACTGG | 4 cut(s) | 622, 1210, 1307, 1718 |
| BseRI | GAGGAG | 1 cut(s) | 1525 |
| BseXI | GCAGC | 6 cut(s) | 871, 996, 1118, 1210, 1390, 1532 |
| Bsh1236I | CGCG | 1 cut(s) | 595 |
| BshFI | GGCC | 3 cut(s) | 486, 744, 990 |
| BshNI | GGYRCC | 1 cut(s) | 1181 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1364 |
| BslFI | GGGAC | 3 cut(s) | 454, 650, 1172 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1150, 1669 |
| BsmAI | GTCTC | 2 cut(s) | 189, 1093 |
| BsmBI | CGTCTC | 1 cut(s) | 189 |
| BsmFI | GGGAC | 3 cut(s) | 454, 650, 1172 |
| BsmI | GAATGC | 2 cut(s) | 955, 1124 |
| BsnI | GGCC | 3 cut(s) | 486, 744, 990 |
| BsoBI | CYCGRG | 1 cut(s) | 1364 |
| Bsp143I | GATC | 4 cut(s) | 118, 1084, 1231, 1665 |
| Bsp19I | CCATGG | 5 cut(s) | 75, 267, 873, 1374, 1479 |
| BspACI | CCGC | 5 cut(s) | 181, 593, 1012, 1151, 1450 |
| BspANI | GGCC | 3 cut(s) | 486, 744, 990 |
| BspCNI | CTCAG | 5 cut(s) | 106, 266, 1339, 1387, 1432 |
| BspFNI | CGCG | 1 cut(s) | 595 |
| BspHI | TCATGA | 1 cut(s) | 1387 |
| BspLI | GGNNCC | 2 cut(s) | 1183, 1470 |
| BspMAI | CTGCAG | 1 cut(s) | 1408 |
| BspMI | ACCTGC | 1 cut(s) | 357 |
| BspOI | GCTAGC | 1 cut(s) | 636 |
| BspT107I | GGYRCC | 1 cut(s) | 1181 |
| BsrI | ACTGG | 4 cut(s) | 622, 1210, 1307, 1718 |
| BssECI | CCNNGG | 5 cut(s) | 75, 267, 873, 1374, 1479 |
| BssMI | GATC | 4 cut(s) | 118, 1084, 1231, 1665 |
| BssNI | GRCGYC | 2 cut(s) | 519, 1453 |
| BssT1I | CCWWGG | 5 cut(s) | 75, 267, 873, 1374, 1479 |
| Bst4CI | ACNGT | 4 cut(s) | 695, 807, 999, 1579 |
| Bst6I | CTCTTC | 1 cut(s) | 1241 |
| BstACI | GRCGYC | 2 cut(s) | 519, 1453 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 230 |
| BstC8I | GCNNGC | 4 cut(s) | 129, 264, 488, 634 |
| BstDEI | CTNAG | 7 cut(s) | 93, 253, 362, 1266, 1347, 1395, 1440 |
| BstDSI | CCRYGG | 5 cut(s) | 75, 267, 873, 1374, 1479 |
| BstEII | GGTNACC | 1 cut(s) | 1658 |
| BstF5I | GGATG | 2 cut(s) | 979, 1216 |
| BstFNI | CGCG | 1 cut(s) | 595 |
| BstKTI | GATC | 4 cut(s) | 121, 1087, 1234, 1668 |
| BstMAI | GTCTC | 2 cut(s) | 189, 1093 |
| BstMBI | GATC | 4 cut(s) | 118, 1084, 1231, 1665 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 230, 1400 |
| BstNSI | RCATGY | 3 cut(s) | 915, 1595, 1745 |
| BstPI | GGTNACC | 1 cut(s) | 1658 |
| BstSFI | CTRYAG | 1 cut(s) | 1404 |
| BstUI | CGCG | 1 cut(s) | 595 |
| BstV1I | GCAGC | 6 cut(s) | 871, 996, 1118, 1210, 1390, 1532 |
| Bsu36I | CCTNAGG | 1 cut(s) | 253 |
| BsuRI | GGCC | 3 cut(s) | 486, 744, 990 |
| BtgI | CCRYGG | 5 cut(s) | 75, 267, 873, 1374, 1479 |
| BtsCI | GGATG | 2 cut(s) | 979, 1216 |
| BtsIMutI | CAGTG | 1 cut(s) | 1623 |
| BveI | ACCTGC | 1 cut(s) | 357 |
| Cac8I | GCNNGC | 4 cut(s) | 129, 264, 488, 634 |
| CciI | TCATGA | 1 cut(s) | 1387 |
| Cfr13I | GGNCC | 2 cut(s) | 178, 1305 |
| CseI | GACGC | 2 cut(s) | 508, 1442 |
| Csp6I | GTAC | 3 cut(s) | 1182, 1351, 1768 |
| CviQI | GTAC | 3 cut(s) | 1182, 1351, 1768 |
| DdeI | CTNAG | 7 cut(s) | 93, 253, 362, 1266, 1347, 1395, 1440 |
| DpnI | GATC | 4 cut(s) | 120, 1086, 1233, 1667 |
| DpnII | GATC | 4 cut(s) | 118, 1084, 1231, 1665 |
| DraIII | CACNNNGTG | 2 cut(s) | 230, 893 |
| EaeI | YGGCCR | 1 cut(s) | 742 |
| Eam1104I | CTCTTC | 1 cut(s) | 1241 |
| EarI | CTCTTC | 1 cut(s) | 1241 |
| Eco130I | CCWWGG | 5 cut(s) | 75, 267, 873, 1374, 1479 |
| Eco147I | AGGCCT | 1 cut(s) | 486 |
| Eco32I | GATATC | 1 cut(s) | 1417 |
| Eco47I | GGWCC | 2 cut(s) | 178, 1305 |
| Eco57I | CTGAAG | 1 cut(s) | 237 |
| Eco81I | CCTNAGG | 1 cut(s) | 253 |
| Eco88I | CYCGRG | 1 cut(s) | 1364 |
| Eco91I | GGTNACC | 1 cut(s) | 1658 |
| EcoO65I | GGTNACC | 1 cut(s) | 1658 |
| EcoRV | GATATC | 1 cut(s) | 1417 |
| EcoT14I | CCWWGG | 5 cut(s) | 75, 267, 873, 1374, 1479 |
| ErhI | CCWWGG | 5 cut(s) | 75, 267, 873, 1374, 1479 |
| Esp3I | CGTCTC | 1 cut(s) | 189 |
| FaqI | GGGAC | 3 cut(s) | 454, 650, 1172 |
| FauI | CCCGC | 1 cut(s) | 1005 |
| FbaI | TGATCA | 2 cut(s) | 118, 1084 |
| Fnu4HI | GCNGC | 7 cut(s) | 860, 1010, 1107, 1199, 1404, 1451, 1521 |
| FokI | GGATG | 2 cut(s) | 986, 1223 |
| Fsp4HI | GCNGC | 7 cut(s) | 860, 1010, 1107, 1199, 1404, 1451, 1521 |
| FspBI | CTAG | 6 cut(s) | 401, 482, 633, 863, 992, 1771 |
| GluI | GCNGC | 7 cut(s) | 860, 1010, 1107, 1199, 1404, 1451, 1521 |
| GsuI | CTGGAG | 2 cut(s) | 639, 1441 |
| HaeIII | GGCC | 3 cut(s) | 486, 744, 990 |
| HgaI | GACGC | 2 cut(s) | 508, 1442 |
| Hin1I | GRCGYC | 2 cut(s) | 519, 1453 |
| HincII | GTYRAC | 1 cut(s) | 1127 |
| HindII | GTYRAC | 1 cut(s) | 1127 |
| HindIII | AAGCTT | 1 cut(s) | 1499 |
| HinfI | GANTC | 4 cut(s) | 663, 904, 1369, 1613 |
| HphI | GGTGA | 3 cut(s) | 905, 1205, 1670 |
| Hpy166II | GTNNAC | 2 cut(s) | 1127, 1633 |
| Hpy188I | TCNGA | 5 cut(s) | 375, 385, 948, 1348, 1627 |
| Hpy8I | GTNNAC | 2 cut(s) | 1127, 1633 |
| HpyAV | CCTTC | 4 cut(s) | 1011, 1353, 1405, 1764 |
| HpyCH4III | ACNGT | 4 cut(s) | 695, 807, 999, 1579 |
| HpyCH4IV | ACGT | 2 cut(s) | 198, 351 |
| HpyCH4V | TGCA | 8 cut(s) | 224, 278, 836, 915, 953, 1106, 1406, 1432 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 230, 1400 |
| HpyF3I | CTNAG | 7 cut(s) | 93, 253, 362, 1266, 1347, 1395, 1440 |
| HpySE526I | ACGT | 2 cut(s) | 198, 351 |
| Hsp92I | GRCGYC | 2 cut(s) | 519, 1453 |
| KpnI | GGTACC | 1 cut(s) | 1185 |
| Ksp22I | TGATCA | 2 cut(s) | 118, 1084 |
| Kzo9I | GATC | 4 cut(s) | 118, 1084, 1231, 1665 |
| LmnI | GCTCC | 1 cut(s) | 1468 |
| Lsp1109I | GCAGC | 6 cut(s) | 871, 996, 1118, 1210, 1390, 1532 |
| LweI | GCATC | 4 cut(s) | 406, 619, 1288, 1419 |
| MaeI | CTAG | 6 cut(s) | 401, 482, 633, 863, 992, 1771 |
| MaeII | ACGT | 2 cut(s) | 198, 351 |
| MaeIII | GTNAC | 2 cut(s) | 1071, 1658 |
| MalI | GATC | 4 cut(s) | 120, 1086, 1233, 1667 |
| MboI | GATC | 4 cut(s) | 118, 1084, 1231, 1665 |
| MboII | GAAGA | 5 cut(s) | 515, 547, 794, 1228, 1673 |
| MfeI | CAATTG | 1 cut(s) | 285 |
| MlsI | TGGCCA | 1 cut(s) | 744 |
| MluNI | TGGCCA | 1 cut(s) | 744 |
| MlyI | GAGTC | 1 cut(s) | 672 |
| MmeI | TCCRAC | 4 cut(s) | 334, 1074, 1168, 1195 |
| Mox20I | TGGCCA | 1 cut(s) | 744 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1680 |
| MscI | TGGCCA | 1 cut(s) | 744 |
| MseI | TTAA | 5 cut(s) | 14, 155, 185, 720, 1493 |
| Msp20I | TGGCCA | 1 cut(s) | 744 |
| MspA1I | CMGCKG | 1 cut(s) | 1009 |
| MunI | CAATTG | 1 cut(s) | 285 |
| Mva1269I | GAATGC | 2 cut(s) | 955, 1124 |
| MvnI | CGCG | 1 cut(s) | 595 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 230, 1400 |
| NcoI | CCATGG | 5 cut(s) | 75, 267, 873, 1374, 1479 |
| NdeII | GATC | 4 cut(s) | 118, 1084, 1231, 1665 |
| NheI | GCTAGC | 1 cut(s) | 632 |
| NlaIV | GGNNCC | 2 cut(s) | 1183, 1470 |
| NmeAIII | GCCGAG | 1 cut(s) | 665 |
| NmuCI | GTSAC | 2 cut(s) | 1071, 1658 |
| NspI | RCATGY | 3 cut(s) | 915, 1595, 1745 |
| PaeR7I | CTCGAG | 1 cut(s) | 1364 |
| PagI | TCATGA | 1 cut(s) | 1387 |
| PceI | AGGCCT | 1 cut(s) | 486 |
| PciI | ACATGT | 1 cut(s) | 1591 |
| PctI | GAATGC | 2 cut(s) | 955, 1124 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1680 |
| PfeI | GAWTC | 3 cut(s) | 904, 1369, 1613 |
| PkrI | GCNGC | 7 cut(s) | 861, 1011, 1108, 1200, 1405, 1452, 1522 |
| PleI | GAGTC | 1 cut(s) | 671 |
| PpsI | GAGTC | 1 cut(s) | 671 |
| PscI | ACATGT | 1 cut(s) | 1591 |
| PsiI | TTATAA | 1 cut(s) | 965 |
| Psp1406I | AACGTT | 1 cut(s) | 351 |
| PspEI | GGTNACC | 1 cut(s) | 1658 |
| PspN4I | GGNNCC | 2 cut(s) | 1183, 1470 |
| PspPI | GGNCC | 2 cut(s) | 178, 1305 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1278, 1310 |
| PstI | CTGCAG | 1 cut(s) | 1408 |
| PvuII | CAGCTG | 1 cut(s) | 1009 |
| RsaI | GTAC | 3 cut(s) | 1183, 1352, 1769 |
| RsaNI | GTAC | 3 cut(s) | 1182, 1351, 1768 |
| SaqAI | TTAA | 5 cut(s) | 14, 155, 185, 720, 1493 |
| SatI | GCNGC | 7 cut(s) | 860, 1010, 1107, 1199, 1404, 1451, 1521 |
| Sau3AI | GATC | 4 cut(s) | 118, 1084, 1231, 1665 |
| Sau96I | GGNCC | 2 cut(s) | 178, 1305 |
| ScaI | AGTACT | 1 cut(s) | 1769 |
| SchI | GAGTC | 1 cut(s) | 672 |
| SfaNI | GCATC | 4 cut(s) | 406, 619, 1288, 1419 |
| SfcI | CTRYAG | 1 cut(s) | 1404 |
| Sfr274I | CTCGAG | 1 cut(s) | 1364 |
| SinI | GGWCC | 2 cut(s) | 178, 1305 |
| SlaI | CTCGAG | 1 cut(s) | 1364 |
| SmlI | CTYRAG | 2 cut(s) | 1112, 1364 |
| SmoI | CTYRAG | 2 cut(s) | 1112, 1364 |
| SseBI | AGGCCT | 1 cut(s) | 486 |
| SsiI | CCGC | 5 cut(s) | 181, 593, 1012, 1151, 1450 |
| SspI | AATATT | 1 cut(s) | 851 |
| SspMI | CTAG | 6 cut(s) | 401, 482, 633, 863, 992, 1771 |
| StuI | AGGCCT | 1 cut(s) | 486 |
| StyI | CCWWGG | 5 cut(s) | 75, 267, 873, 1374, 1479 |
| TaaI | ACNGT | 4 cut(s) | 695, 807, 999, 1579 |
| TaiI | ACGT | 2 cut(s) | 201, 354 |
| TaqI | TCGA | 2 cut(s) | 1282, 1365 |
| TatI | WGTACW | 2 cut(s) | 1350, 1767 |
| TauI | GCSGC | 1 cut(s) | 1453 |
| TfiI | GAWTC | 3 cut(s) | 904, 1369, 1613 |
| Tru1I | TTAA | 5 cut(s) | 14, 155, 185, 720, 1493 |
| Tru9I | TTAA | 5 cut(s) | 14, 155, 185, 720, 1493 |
| TscAI | CASTG | 1 cut(s) | 1623 |
| TseFI | GTSAC | 2 cut(s) | 1071, 1658 |
| TseI | GCWGC | 6 cut(s) | 859, 1009, 1106, 1198, 1403, 1520 |
| Tsp45I | GTSAC | 2 cut(s) | 1071, 1658 |
| TspDTI | ATGAA | 8 cut(s) | 124, 516, 534, 1337, 1376, 1404, 1586, 1598 |
| TspGWI | ACGGA | 3 cut(s) | 90, 218, 1297 |
| TspRI | CASTG | 1 cut(s) | 1623 |
| VpaK11BI | GGWCC | 2 cut(s) | 178, 1305 |
| XapI | RAATTY | 3 cut(s) | 881, 1444, 1639 |
| XbaI | TCTAGA | 1 cut(s) | 400 |
| XceI | RCATGY | 3 cut(s) | 915, 1595, 1745 |
| XhoI | CTCGAG | 1 cut(s) | 1364 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1680 |
| XspI | CTAG | 6 cut(s) | 401, 482, 633, 863, 992, 1771 |
| ZrmI | AGTACT | 1 cut(s) | 1769 |