Belongs to the MCM family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G46280 AT5G46280 AT5G46280 AT5G46280 |
| fragaria_vesca | FvH4_3g05860 |
| malus_domestica | MD05G1286600.v1.1 MD10G1264100.v1.1 |
| prunus_persica | Prupe.4G078300_v2.0.a1 |
| pyrus_communis | pycom10g22020 |
| rosa_chinensis | RchiOBHm_Chr5g0013601 RchiOBHm_Chr5g0013661 |
| rosa_laevigata | RLG00000032038 |
| rosa_multiflora | Rmu_sc0002573.1_g000006 Rmu_sc0002573.1_g000015 |
| rosa_roxburghii | Rroxscaffold_1G00062940 |
| rosa_rugosa | Rorug05G0011700 Rorug05G0011800 |
| rosa_samantha | Rh5AG106100 Rh5AG106300 Rh5BG102500 Rh5CG114000 Rh5CG114400 Rh5DG100800 Rh5DG101200 |
| rosa_wichuraiana | Rw5G009270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1460 |
| Acc16I | TGCGCA | 1 cut(s) | 1481 |
| Acc36I | ACCTGC | 2 cut(s) | 873, 2051 |
| Acc65I | GGTACC | 1 cut(s) | 246 |
| AccB1I | GGYRCC | 3 cut(s) | 161, 246, 883 |
| AccII | CGCG | 3 cut(s) | 602, 619, 1998 |
| AccIII | TCCGGA | 1 cut(s) | 2261 |
| AciI | CCGC | 8 cut(s) | 106, 109, 212, 301, 600, 617, 1456, 2288 |
| AclI | AACGTT | 2 cut(s) | 2250, 2297 |
| AcoI | YGGCCR | 1 cut(s) | 213 |
| AcsI | RAATTY | 3 cut(s) | 595, 1202, 1903 |
| AcuI | CTGAAG | 2 cut(s) | 272, 1107 |
| AfaI | GTAC | 5 cut(s) | 248, 335, 1667, 2029, 2089 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 428, 1340, 1686 |
| AgsI | TTSAA | 6 cut(s) | 284, 1849, 1869, 1895, 2109, 2318 |
| AjnI | CCWGG | 5 cut(s) | 164, 604, 648, 667, 709 |
| Alw21I | GWGCWC | 1 cut(s) | 1535 |
| Alw26I | GTCTC | 7 cut(s) | 301, 450, 666, 1032, 1127, 1468, 1829 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1115 |
| Ama87I | CYCGRG | 1 cut(s) | 241 |
| Aor13HI | TCCGGA | 1 cut(s) | 2261 |
| AoxI | GGCC | 6 cut(s) | 48, 87, 213, 286, 389, 1081 |
| ApeKI | GCWGC | 7 cut(s) | 26, 1112, 1255, 1322, 1325, 1886, 1988 |
| ApoI | RAATTY | 3 cut(s) | 595, 1202, 1903 |
| AseI | ATTAAT | 1 cut(s) | 932 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1864 |
| Asp718I | GGTACC | 1 cut(s) | 246 |
| AspLEI | GCGC | 3 cut(s) | 604, 1482, 2000 |
| AspS9I | GGNCC | 4 cut(s) | 87, 287, 1081, 1942 |
| AsuC2I | CCSGG | 2 cut(s) | 1085, 1946 |
| AsuHPI | GGTGA | 8 cut(s) | 361, 430, 541, 863, 965, 995, 1019, 1523 |
| AvaI | CYCGRG | 1 cut(s) | 241 |
| AvaII | GGWCC | 1 cut(s) | 1942 |
| BamHI | GGATCC | 3 cut(s) | 341, 488, 1441 |
| BanI | GGYRCC | 3 cut(s) | 161, 246, 883 |
| BanII | GRGCYC | 1 cut(s) | 1535 |
| BauI | CACGAG | 1 cut(s) | 444 |
| Bbv12I | GWGCWC | 1 cut(s) | 1535 |
| BbvI | GCAGC | 7 cut(s) | 13, 1099, 1267, 1309, 1312, 1873, 1975 |
| BceAI | ACGGC | 3 cut(s) | 163, 288, 376 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 143, 177, 1475, 1509 |
| BciT130I | CCWGG | 5 cut(s) | 166, 606, 650, 669, 711 |
| BciVI | GTATCC | 1 cut(s) | 1295 |
| BcnI | CCSGG | 2 cut(s) | 1085, 1946 |
| BcoDI | GTCTC | 7 cut(s) | 301, 450, 666, 1032, 1127, 1468, 1829 |
| BfaI | CTAG | 3 cut(s) | 315, 1151, 2283 |
| BfmI | CTRYAG | 1 cut(s) | 2058 |
| BfuAI | ACCTGC | 2 cut(s) | 873, 2051 |
| BfuI | GTATCC | 1 cut(s) | 1295 |
| BisI | GCNGC | 9 cut(s) | 27, 109, 213, 1113, 1256, 1323, 1326, 1887, 1989 |
| BlsI | GCNGC | 9 cut(s) | 28, 110, 214, 1114, 1257, 1324, 1327, 1888, 1990 |
| Bme1390I | CCNGG | 7 cut(s) | 166, 606, 650, 669, 711, 1085, 1946 |
| Bme18I | GGWCC | 1 cut(s) | 1942 |
| BmeT110I | CYCGRG | 1 cut(s) | 241 |
| BmgT120I | GGNCC | 4 cut(s) | 87, 287, 1081, 1942 |
| BmiI | GGNNCC | 6 cut(s) | 163, 248, 343, 490, 885, 1443 |
| BmrFI | CCNGG | 7 cut(s) | 166, 606, 650, 669, 711, 1085, 1946 |
| BmsI | GCATC | 9 cut(s) | 199, 646, 1298, 1301, 1495, 1504, 1724, 1873, 2104 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 309, 341 |
| BpmI | CTGGAG | 3 cut(s) | 690, 1527, 1797 |
| BpuMI | CCSGG | 2 cut(s) | 1085, 1946 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1224 |
| BsaI | GGTCTC | 1 cut(s) | 666 |
| BsaJI | CCNNGG | 7 cut(s) | 216, 242, 345, 358, 1062, 1084, 2118 |
| BsaWI | WCCGGW | 1 cut(s) | 2261 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 663, 693 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 428, 1340, 1686 |
| Bse118I | RCCGGY | 1 cut(s) | 1757 |
| Bse1I | ACTGG | 5 cut(s) | 51, 433, 885, 1510, 1780 |
| Bse3DI | GCAATG | 2 cut(s) | 1170, 1524 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1224 |
| BseAI | TCCGGA | 1 cut(s) | 2261 |
| BseBI | CCWGG | 5 cut(s) | 166, 606, 650, 669, 711 |
| BseDI | CCNNGG | 7 cut(s) | 216, 242, 345, 358, 1062, 1084, 2118 |
| BseGI | GGATG | 5 cut(s) | 464, 514, 951, 1292, 1571 |
| BseJI | GATNNNNATC | 1 cut(s) | 1224 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 428, 1340, 1686 |
| BseMI | GCAATG | 2 cut(s) | 1170, 1524 |
| BseMII | CTCAG | 5 cut(s) | 164, 582, 1479, 1548, 1762 |
| BseNI | ACTGG | 5 cut(s) | 51, 433, 885, 1510, 1780 |
| BseXI | GCAGC | 7 cut(s) | 13, 1099, 1267, 1309, 1312, 1873, 1975 |
| Bsh1236I | CGCG | 3 cut(s) | 602, 619, 1998 |
| BshFI | GGCC | 6 cut(s) | 50, 89, 215, 288, 391, 1083 |
| BshNI | GGYRCC | 3 cut(s) | 161, 246, 883 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1535 |
| BsiHKCI | CYCGRG | 1 cut(s) | 241 |
| BsiSI | CCGG | 4 cut(s) | 1084, 1758, 1945, 2262 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 428, 1340, 1686 |
| BsmAI | GTCTC | 7 cut(s) | 301, 450, 666, 1032, 1127, 1468, 1829 |
| BsmBI | CGTCTC | 1 cut(s) | 1829 |
| BsnI | GGCC | 6 cut(s) | 50, 89, 215, 288, 391, 1083 |
| Bso31I | GGTCTC | 1 cut(s) | 666 |
| BsoBI | CYCGRG | 1 cut(s) | 241 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1535 |
| Bsp13I | TCCGGA | 1 cut(s) | 2261 |
| Bsp19I | CCATGG | 2 cut(s) | 345, 2118 |
| BspACI | CCGC | 8 cut(s) | 106, 109, 212, 301, 600, 617, 1456, 2288 |
| BspANI | GGCC | 6 cut(s) | 50, 89, 215, 288, 391, 1083 |
| BspCNI | CTCAG | 5 cut(s) | 165, 583, 1478, 1547, 1761 |
| BspEI | TCCGGA | 1 cut(s) | 2261 |
| BspFNI | CGCG | 3 cut(s) | 602, 619, 1998 |
| BspHI | TCATGA | 1 cut(s) | 2369 |
| BspLI | GGNNCC | 6 cut(s) | 163, 248, 343, 490, 885, 1443 |
| BspMAI | CTGCAG | 1 cut(s) | 2062 |
| BspMI | ACCTGC | 2 cut(s) | 873, 2051 |
| BspQI | GCTCTTC | 2 cut(s) | 711, 1896 |
| BspT107I | GGYRCC | 3 cut(s) | 161, 246, 883 |
| BspTNI | GGTCTC | 1 cut(s) | 666 |
| BsrDI | GCAATG | 2 cut(s) | 1170, 1524 |
| BsrFI | RCCGGY | 1 cut(s) | 1757 |
| BsrI | ACTGG | 5 cut(s) | 51, 433, 885, 1510, 1780 |
| BssAI | RCCGGY | 1 cut(s) | 1757 |
| BssECI | CCNNGG | 7 cut(s) | 216, 242, 345, 358, 1062, 1084, 2118 |
| BssSI | CACGAG | 1 cut(s) | 444 |
| BssT1I | CCWWGG | 3 cut(s) | 345, 1062, 2118 |
| Bst2BI | CACGAG | 1 cut(s) | 444 |
| Bst2UI | CCWGG | 5 cut(s) | 166, 606, 650, 669, 711 |
| Bst4CI | ACNGT | 9 cut(s) | 625, 677, 751, 1264, 1355, 1419, 1595, 2087, 2353 |
| Bst6I | CTCTTC | 3 cut(s) | 711, 1540, 1896 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1477 |
| BstC8I | GCNNGC | 3 cut(s) | 661, 1484, 1759 |
| BstDEI | CTNAG | 8 cut(s) | 55, 173, 591, 1037, 1465, 1534, 1748, 2242 |
| BstDSI | CCRYGG | 4 cut(s) | 216, 345, 358, 2118 |
| BstEII | GGTNACC | 1 cut(s) | 529 |
| BstF5I | GGATG | 5 cut(s) | 464, 514, 951, 1292, 1571 |
| BstFNI | CGCG | 3 cut(s) | 602, 619, 1998 |
| BstHHI | GCGC | 3 cut(s) | 604, 1482, 2000 |
| BstMAI | GTCTC | 7 cut(s) | 301, 450, 666, 1032, 1127, 1468, 1829 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 262, 610, 1064, 1477, 1997, 2147 |
| BstNI | CCWGG | 5 cut(s) | 166, 606, 650, 669, 711 |
| BstNSI | RCATGY | 3 cut(s) | 663, 1475, 1486 |
| BstPI | GGTNACC | 1 cut(s) | 529 |
| BstSCI | CCNGG | 7 cut(s) | 164, 604, 648, 667, 709, 1083, 1944 |
| BstSFI | CTRYAG | 1 cut(s) | 2058 |
| BstUI | CGCG | 3 cut(s) | 602, 619, 1998 |
| BstV1I | GCAGC | 7 cut(s) | 13, 1099, 1267, 1309, 1312, 1873, 1975 |
| BstX2I | RGATCY | 4 cut(s) | 341, 488, 1441, 2015 |
| BstYI | RGATCY | 4 cut(s) | 341, 488, 1441, 2015 |
| BsuI | GTATCC | 1 cut(s) | 1295 |
| BsuRI | GGCC | 6 cut(s) | 50, 89, 215, 288, 391, 1083 |
| BtgI | CCRYGG | 4 cut(s) | 216, 345, 358, 2118 |
| BtgZI | GCGATG | 3 cut(s) | 27, 1979, 2358 |
| BtsCI | GGATG | 5 cut(s) | 464, 514, 951, 1292, 1571 |
| BtsI | GCAGTG | 3 cut(s) | 773, 927, 1318 |
| BtsIMutI | CAGTG | 5 cut(s) | 773, 878, 927, 1318, 2358 |
| BveI | ACCTGC | 2 cut(s) | 873, 2051 |
| Cac8I | GCNNGC | 3 cut(s) | 661, 1484, 1759 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1115 |
| CciI | TCATGA | 1 cut(s) | 2369 |
| CfoI | GCGC | 3 cut(s) | 604, 1482, 2000 |
| Cfr10I | RCCGGY | 1 cut(s) | 1757 |
| Cfr13I | GGNCC | 4 cut(s) | 87, 287, 1081, 1942 |
| CsiI | ACCWGGT | 1 cut(s) | 648 |
| Csp6I | GTAC | 5 cut(s) | 247, 334, 1666, 2028, 2088 |
| CviQI | GTAC | 5 cut(s) | 247, 334, 1666, 2028, 2088 |
| DdeI | CTNAG | 8 cut(s) | 55, 173, 591, 1037, 1465, 1534, 1748, 2242 |
| DraI | TTTAAA | 1 cut(s) | 1902 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1460 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1460 |
| EaeI | YGGCCR | 1 cut(s) | 213 |
| Eam1104I | CTCTTC | 3 cut(s) | 711, 1540, 1896 |
| EarI | CTCTTC | 3 cut(s) | 711, 1540, 1896 |
| EciI | GGCGGA | 1 cut(s) | 2303 |
| Ecl136II | GAGCTC | 1 cut(s) | 1533 |
| Eco130I | CCWWGG | 3 cut(s) | 345, 1062, 2118 |
| Eco24I | GRGCYC | 1 cut(s) | 1535 |
| Eco31I | GGTCTC | 1 cut(s) | 666 |
| Eco47I | GGWCC | 1 cut(s) | 1942 |
| Eco53kI | GAGCTC | 1 cut(s) | 1533 |
| Eco57I | CTGAAG | 2 cut(s) | 272, 1107 |
| Eco88I | CYCGRG | 1 cut(s) | 241 |
| Eco91I | GGTNACC | 1 cut(s) | 529 |
| EcoICRI | GAGCTC | 1 cut(s) | 1533 |
| EcoO109I | RGGNCCY | 1 cut(s) | 287 |
| EcoO65I | GGTNACC | 1 cut(s) | 529 |
| EcoRI | GAATTC | 1 cut(s) | 595 |
| EcoRII | CCWGG | 5 cut(s) | 164, 604, 648, 667, 709 |
| EcoT14I | CCWWGG | 3 cut(s) | 345, 1062, 2118 |
| EcoT22I | ATGCAT | 3 cut(s) | 661, 1294, 1488 |
| EcoT38I | GRGCYC | 1 cut(s) | 1535 |
| ErhI | CCWWGG | 3 cut(s) | 345, 1062, 2118 |
| Esp3I | CGTCTC | 1 cut(s) | 1829 |
| FauI | CCCGC | 1 cut(s) | 308 |
| FauNDI | CATATG | 1 cut(s) | 1738 |
| Fnu4HI | GCNGC | 9 cut(s) | 27, 109, 213, 1113, 1256, 1323, 1326, 1887, 1989 |
| FokI | GGATG | 5 cut(s) | 451, 521, 958, 1279, 1558 |
| FriOI | GRGCYC | 1 cut(s) | 1535 |
| Fsp4HI | GCNGC | 9 cut(s) | 27, 109, 213, 1113, 1256, 1323, 1326, 1887, 1989 |
| FspBI | CTAG | 3 cut(s) | 315, 1151, 2283 |
| FspI | TGCGCA | 1 cut(s) | 1481 |
| GlaI | GCGC | 3 cut(s) | 603, 1481, 1999 |
| GluI | GCNGC | 9 cut(s) | 27, 109, 213, 1113, 1256, 1323, 1326, 1887, 1989 |
| GsuI | CTGGAG | 3 cut(s) | 690, 1527, 1797 |
| HaeIII | GGCC | 6 cut(s) | 50, 89, 215, 288, 391, 1083 |
| HapII | CCGG | 4 cut(s) | 1084, 1758, 1945, 2262 |
| HhaI | GCGC | 3 cut(s) | 604, 1482, 2000 |
| Hin6I | GCGC | 3 cut(s) | 602, 1480, 1998 |
| HinP1I | GCGC | 3 cut(s) | 602, 1480, 1998 |
| HincII | GTYRAC | 1 cut(s) | 1929 |
| HindII | GTYRAC | 1 cut(s) | 1929 |
| HinfI | GANTC | 7 cut(s) | 114, 169, 1391, 1690, 2144, 2172, 2189 |
| HpaII | CCGG | 4 cut(s) | 1084, 1758, 1945, 2262 |
| HphI | GGTGA | 8 cut(s) | 361, 430, 541, 863, 965, 995, 1019, 1523 |
| Hpy166II | GTNNAC | 4 cut(s) | 124, 358, 412, 1929 |
| Hpy8I | GTNNAC | 4 cut(s) | 124, 358, 412, 1929 |
| Hpy99I | CGWCG | 1 cut(s) | 155 |
| HpyAV | CCTTC | 5 cut(s) | 61, 897, 1023, 1140, 2096 |
| HpyCH4III | ACNGT | 9 cut(s) | 625, 677, 751, 1264, 1355, 1419, 1595, 2087, 2353 |
| HpyCH4IV | ACGT | 2 cut(s) | 2250, 2297 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 262, 610, 1064, 1477, 1997, 2147 |
| HpyF3I | CTNAG | 8 cut(s) | 55, 173, 591, 1037, 1465, 1534, 1748, 2242 |
| HpySE526I | ACGT | 2 cut(s) | 2250, 2297 |
| HspAI | GCGC | 3 cut(s) | 602, 1480, 1998 |
| Kpn2I | TCCGGA | 1 cut(s) | 2261 |
| KpnI | GGTACC | 1 cut(s) | 250 |
| KroI | GCCGGC | 1 cut(s) | 1757 |
| KroNI | GCCGGC | 1 cut(s) | 1759 |
| LguI | GCTCTTC | 2 cut(s) | 711, 1896 |
| LmnI | GCTCC | 6 cut(s) | 262, 1063, 1252, 1530, 1948, 2264 |
| Lsp1109I | GCAGC | 7 cut(s) | 13, 1099, 1267, 1309, 1312, 1873, 1975 |
| LweI | GCATC | 9 cut(s) | 199, 646, 1298, 1301, 1495, 1504, 1724, 1873, 2104 |
| MabI | ACCWGGT | 1 cut(s) | 648 |
| MaeI | CTAG | 3 cut(s) | 315, 1151, 2283 |
| MaeII | ACGT | 2 cut(s) | 2250, 2297 |
| MboII | GAAGA | 8 cut(s) | 71, 698, 1083, 1557, 1562, 1565, 1883, 2051 |
| MfeI | CAATTG | 1 cut(s) | 684 |
| MflI | RGATCY | 4 cut(s) | 341, 488, 1441, 2015 |
| MhlI | GDGCHC | 1 cut(s) | 1535 |
| MlyI | GAGTC | 2 cut(s) | 108, 1385 |
| MmeI | TCCRAC | 2 cut(s) | 524, 1607 |
| Mph1103I | ATGCAT | 3 cut(s) | 661, 1294, 1488 |
| MroI | TCCGGA | 1 cut(s) | 2261 |
| MroNI | GCCGGC | 1 cut(s) | 1757 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1864 |
| MseI | TTAA | 9 cut(s) | 204, 402, 932, 959, 990, 1584, 1659, 1901, 2184 |
| MslI | CAYNNNNRTG | 3 cut(s) | 992, 998, 2333 |
| MspA1I | CMGCKG | 1 cut(s) | 1112 |
| MspI | CCGG | 4 cut(s) | 1084, 1758, 1945, 2262 |
| MspR9I | CCNGG | 7 cut(s) | 166, 606, 650, 669, 711, 1085, 1946 |
| MunI | CAATTG | 1 cut(s) | 684 |
| MvaI | CCWGG | 5 cut(s) | 166, 606, 650, 669, 711 |
| MvnI | CGCG | 3 cut(s) | 602, 619, 1998 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 262, 610, 1064, 1477, 1997, 2147 |
| NaeI | GCCGGC | 1 cut(s) | 1759 |
| NciI | CCSGG | 2 cut(s) | 1085, 1946 |
| NcoI | CCATGG | 2 cut(s) | 345, 2118 |
| NdeI | CATATG | 1 cut(s) | 1738 |
| NgoMIV | GCCGGC | 1 cut(s) | 1757 |
| NlaIV | GGNNCC | 6 cut(s) | 163, 248, 343, 490, 885, 1443 |
| NmuCI | GTSAC | 4 cut(s) | 367, 529, 983, 1117 |
| NsbI | TGCGCA | 1 cut(s) | 1481 |
| NsiI | ATGCAT | 3 cut(s) | 661, 1294, 1488 |
| NspI | RCATGY | 3 cut(s) | 663, 1475, 1486 |
| PaeI | GCATGC | 2 cut(s) | 663, 1486 |
| PagI | TCATGA | 1 cut(s) | 2369 |
| PciSI | GCTCTTC | 2 cut(s) | 711, 1896 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 451 |
| PdiI | GCCGGC | 1 cut(s) | 1759 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1864 |
| PfeI | GAWTC | 5 cut(s) | 169, 1690, 2144, 2172, 2189 |
| PkrI | GCNGC | 9 cut(s) | 28, 110, 214, 1114, 1257, 1324, 1327, 1888, 1990 |
| PleI | GAGTC | 2 cut(s) | 108, 1385 |
| PpsI | GAGTC | 2 cut(s) | 108, 1385 |
| PshBI | ATTAAT | 1 cut(s) | 932 |
| Psp124BI | GAGCTC | 1 cut(s) | 1535 |
| Psp1406I | AACGTT | 2 cut(s) | 2250, 2297 |
| Psp6I | CCWGG | 5 cut(s) | 164, 604, 648, 667, 709 |
| PspEI | GGTNACC | 1 cut(s) | 529 |
| PspGI | CCWGG | 5 cut(s) | 164, 604, 648, 667, 709 |
| PspN4I | GGNNCC | 6 cut(s) | 163, 248, 343, 490, 885, 1443 |
| PspPI | GGNCC | 4 cut(s) | 87, 287, 1081, 1942 |
| PstI | CTGCAG | 1 cut(s) | 2062 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1115 |
| PsuI | RGATCY | 4 cut(s) | 341, 488, 1441, 2015 |
| PvuII | CAGCTG | 1 cut(s) | 1112 |
| RsaI | GTAC | 5 cut(s) | 248, 335, 1667, 2029, 2089 |
| RsaNI | GTAC | 5 cut(s) | 247, 334, 1666, 2028, 2088 |
| RseI | CAYNNNNRTG | 3 cut(s) | 992, 998, 2333 |
| SacI | GAGCTC | 1 cut(s) | 1535 |
| SapI | GCTCTTC | 2 cut(s) | 711, 1896 |
| SaqAI | TTAA | 9 cut(s) | 204, 402, 932, 959, 990, 1584, 1659, 1901, 2184 |
| SatI | GCNGC | 9 cut(s) | 27, 109, 213, 1113, 1256, 1323, 1326, 1887, 1989 |
| Sau96I | GGNCC | 4 cut(s) | 87, 287, 1081, 1942 |
| SchI | GAGTC | 2 cut(s) | 108, 1385 |
| ScrFI | CCNGG | 7 cut(s) | 166, 606, 650, 669, 711, 1085, 1946 |
| SduI | GDGCHC | 1 cut(s) | 1535 |
| SexAI | ACCWGGT | 1 cut(s) | 648 |
| SfaNI | GCATC | 9 cut(s) | 199, 646, 1298, 1301, 1495, 1504, 1724, 1873, 2104 |
| SfcI | CTRYAG | 1 cut(s) | 2058 |
| SinI | GGWCC | 1 cut(s) | 1942 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 992, 998, 2333 |
| SphI | GCATGC | 2 cut(s) | 663, 1486 |
| SsiI | CCGC | 8 cut(s) | 106, 109, 212, 301, 600, 617, 1456, 2288 |
| SspI | AATATT | 1 cut(s) | 1378 |
| SspMI | CTAG | 3 cut(s) | 315, 1151, 2283 |
| SstI | GAGCTC | 1 cut(s) | 1535 |
| StyD4I | CCNGG | 7 cut(s) | 164, 604, 648, 667, 709, 1083, 1944 |
| StyI | CCWWGG | 3 cut(s) | 345, 1062, 2118 |
| TaaI | ACNGT | 9 cut(s) | 625, 677, 751, 1264, 1355, 1419, 1595, 2087, 2353 |
| TaiI | ACGT | 2 cut(s) | 2253, 2300 |
| TaqI | TCGA | 3 cut(s) | 237, 1410, 2127 |
| TaqII | GACCGA | 1 cut(s) | 548 |
| TatI | WGTACW | 2 cut(s) | 333, 1665 |
| TauI | GCSGC | 2 cut(s) | 111, 215 |
| TfiI | GAWTC | 5 cut(s) | 169, 1690, 2144, 2172, 2189 |
| Tru1I | TTAA | 9 cut(s) | 204, 402, 932, 959, 990, 1584, 1659, 1901, 2184 |
| Tru9I | TTAA | 9 cut(s) | 204, 402, 932, 959, 990, 1584, 1659, 1901, 2184 |
| TscAI | CASTG | 5 cut(s) | 780, 885, 927, 1318, 2358 |
| TseFI | GTSAC | 4 cut(s) | 367, 529, 983, 1117 |
| TseI | GCWGC | 7 cut(s) | 26, 1112, 1255, 1322, 1325, 1886, 1988 |
| Tsp45I | GTSAC | 4 cut(s) | 367, 529, 983, 1117 |
| TspGWI | ACGGA | 5 cut(s) | 233, 481, 1564, 2028, 2264 |
| TspRI | CASTG | 5 cut(s) | 780, 885, 927, 1318, 2358 |
| VpaK11BI | GGWCC | 1 cut(s) | 1942 |
| VspI | ATTAAT | 1 cut(s) | 932 |
| XapI | RAATTY | 3 cut(s) | 595, 1202, 1903 |
| XceI | RCATGY | 3 cut(s) | 663, 1475, 1486 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2000 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1864 |
| XspI | CTAG | 3 cut(s) | 315, 1151, 2283 |
| Zsp2I | ATGCAT | 3 cut(s) | 661, 1294, 1488 |