Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007430

Physical Location & Seq

Genomic Coordinates Forward (+)

9707322 .. 9709097

Gene Structure 1776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG106100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCTCAACTTTTAAGAGCAATTATGAATATCGTTCCATTGGCAATATCAACTACTGGTCGGGGTTCTTCTGGGGTTGGTTTGACAGCTGCTGTTACTTCAGATCAAGAGACAGGAGAGAGAAGGCTAGAAGCTGGTGCCATGGTTCTTGCTGATAGCGGTGTTTTCTGTATTGATGAATTTGACAAAATGAATGATCAAGATCGCGTTGCCATACATAAAGTTATGGAACAGCAGACTGTTACTATTGCCAAAGCTGGAATCCATGCATCTCTCAACACGCGGTGCAGTGTGGTGGCTGCTGCAAACCCCATATATGGCCCTTATGACCGTTCATTGACACCAACAAAGAATATCGGACTTCCAGACACTTTGCTTTCTCGTTTTGATTTGCTGTTTATTGTATTGGATCAAATGGATCCTGATATTGACCGTCAAGTCTCAGAGCATGTATTGCGCATGCATTGGTATCATTCTGCATCTGGAGGTGAAGAAATGTTGATGCGAACTCAGGATATGGAGGAGAAGATGAAATTGATAACGACTCCACCATATTTGTCAAGTATAACCGAATGCTTCATGGAAAGAAAACATCTAGGGGCATCTGAACAAATTGCAACAGCATGTGCAGAACTCAGAGATGCCAGTTCAAATGCAAAGACTGGTCCAATTACTGCCAGAACCTTAGAAACAATCATTCGTCTCTCAACTGCTCATGCGAAATTAAAGTTAAGCAGAAAGGAGTTGACTGACATGGAGGAATGGGAGCAAGAAAGAGAAATGGAGAGGAATGTCAGAGATGTTCATCGTTCAGGTGAAAATGATGGATCTAGCAATAGAGCTGCTACTAGAGATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

296

Amino Acids

32.73

Weight (kDa)

5.45

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM	PF00493	1 - 165	4.6e-73	MCM P-loop domain
Mg_chelatase	PF01078	49 - 115	1.3e-06	Magnesium chelatase, subunit ChlI
MCM_lid	PF17855	211 - 256	9.7e-10	MCM AAA-lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46280 AT5G46280 AT5G46280 AT5G46280
fragaria_vesca	FvH4_3g05860
malus_domestica	MD05G1286600.v1.1 MD10G1264100.v1.1
prunus_persica	Prupe.4G078300_v2.0.a1
pyrus_communis	pycom10g22020
rosa_chinensis	RchiOBHm_Chr5g0013601 RchiOBHm_Chr5g0013661
rosa_laevigata	RLG00000032038
rosa_multiflora	Rmu_sc0002573.1_g000006 Rmu_sc0002573.1_g000015
rosa_roxburghii	Rroxscaffold_1G00062940
rosa_rugosa	Rorug05G0011700 Rorug05G0011800
rosa_samantha	Rh5AG106100 Rh5AG106300 Rh5BG102500 Rh5CG114000 Rh5CG114400 Rh5DG100800 Rh5DG101200
rosa_wichuraiana	Rw5G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	467
Acc16I	TGCGCA	1 cut(s)	488
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	2 cut(s)	237, 313
AciI	CCGC	2 cut(s)	189, 313
AclWI	GGATC	5 cut(s)	11, 443, 447, 456, 865
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	114
AdeI	CACNNNGTG	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	681
AluBI	AGCT	4 cut(s)	119, 164, 287, 872
AluI	AGCT	4 cut(s)	119, 164, 287, 872
Alw26I	GTCTC	4 cut(s)	39, 134, 475, 737
AlwI	GGATC	5 cut(s)	11, 443, 447, 456, 865
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	4 cut(s)	119, 329, 332, 872
ApoI	RAATTY	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	2 cut(s)	350, 695
AsuHPI	GGTGA	3 cut(s)	26, 530, 857
AvaII	GGWCC	1 cut(s)	695
BamHI	GGATCC	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	167
BbvI	GCAGC	4 cut(s)	106, 316, 319, 859
BccI	CCATC	1 cut(s)	848
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	4 cut(s)	39, 134, 475, 737
BfaI	CTAG	4 cut(s)	158, 626, 861, 879
BisI	GCNGC	4 cut(s)	120, 330, 333, 873
BlsI	GCNGC	4 cut(s)	121, 331, 334, 874
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	2 cut(s)	350, 695
BmiI	GGNNCC	2 cut(s)	169, 450
BmsI	GCATC	6 cut(s)	308, 518, 522, 641, 661, 874
BpmI	CTGGAG	1 cut(s)	534
BsaBI	GATNNNNATC	2 cut(s)	231, 834
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	3 cut(s)	91, 675, 697
Bse8I	GATNNNNATC	2 cut(s)	231, 834
BseDI	CCNNGG	1 cut(s)	171
BseJI	GATNNNNATC	2 cut(s)	231, 834
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	3 cut(s)	486, 554, 679
BseNI	ACTGG	3 cut(s)	91, 675, 697
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	4 cut(s)	106, 316, 319, 859
BsgI	GTGCAG	2 cut(s)	337, 678
Bsh1236I	CGCG	2 cut(s)	237, 313
BshFI	GGCC	1 cut(s)	351
BshNI	GGYRCC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	4 cut(s)	39, 134, 475, 737
BsmBI	CGTCTC	1 cut(s)	737
BsmI	GAATGC	1 cut(s)	608
BsnI	GGCC	1 cut(s)	351
Bsp143I	GATC	7 cut(s)	16, 133, 226, 232, 439, 448, 857
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	2 cut(s)	189, 313
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	3 cut(s)	485, 553, 678
BspFNI	CGCG	2 cut(s)	237, 313
BspLI	GGNNCC	2 cut(s)	169, 450
BspPI	GGATC	5 cut(s)	11, 443, 447, 456, 865
BspT107I	GGYRCC	1 cut(s)	167
BsrI	ACTGG	3 cut(s)	91, 675, 697
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	7 cut(s)	16, 133, 226, 232, 439, 448, 857
BssT1I	CCWWGG	1 cut(s)	171
Bst4CI	ACNGT	3 cut(s)	271, 362, 464
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	4 cut(s)	472, 540, 665, 715
BstDSI	CCRYGG	1 cut(s)	171
BstFNI	CGCG	2 cut(s)	237, 313
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	7 cut(s)	19, 136, 229, 235, 442, 451, 860
BstMAI	GTCTC	4 cut(s)	39, 134, 475, 737
BstMBI	GATC	7 cut(s)	16, 133, 226, 232, 439, 448, 857
BstMWI	GCNNNNNNNGC	1 cut(s)	484
BstNSI	RCATGY	3 cut(s)	482, 493, 657
BstUI	CGCG	2 cut(s)	237, 313
BstV1I	GCAGC	4 cut(s)	106, 316, 319, 859
BstX2I	RGATCY	2 cut(s)	448, 857
BstYI	RGATCY	2 cut(s)	448, 857
BsuRI	GGCC	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	491
CaiI	CAGNNNCTG	1 cut(s)	122
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	2 cut(s)	350, 695
CspCI	CAANNNNNGTGG	2 cut(s)	567, 602
CviAII	CATG	8 cut(s)	172, 296, 479, 490, 610, 654, 746, 784
CviJI	RGCY	7 cut(s)	119, 157, 164, 287, 329, 351, 872
CviKI_1	RGCY	7 cut(s)	119, 157, 164, 287, 329, 351, 872
DdeI	CTNAG	4 cut(s)	472, 540, 665, 715
DpnI	GATC	7 cut(s)	18, 135, 228, 234, 441, 450, 859
DpnII	GATC	7 cut(s)	16, 133, 226, 232, 439, 448, 857
DraIII	CACNNNGTG	1 cut(s)	315
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
Eco130I	CCWWGG	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	2 cut(s)	301, 495
ErhI	CCWWGG	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	737
FaeI	CATG	8 cut(s)	175, 299, 482, 493, 613, 657, 749, 787
FatI	CATG	8 cut(s)	171, 295, 478, 489, 609, 653, 745, 783
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	4 cut(s)	120, 330, 333, 873
Fsp4HI	GCNGC	4 cut(s)	120, 330, 333, 873
FspBI	CTAG	4 cut(s)	158, 626, 861, 879
FspI	TGCGCA	1 cut(s)	488
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	4 cut(s)	120, 330, 333, 873
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	351
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	8 cut(s)	175, 299, 482, 493, 613, 657, 749, 787
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HinfI	GANTC	2 cut(s)	291, 574
HphI	GGTGA	3 cut(s)	26, 530, 857
Hpy166II	GTNNAC	1 cut(s)	777
Hpy188I	TCNGA	6 cut(s)	133, 389, 475, 637, 668, 827
Hpy188III	TCNNGA	6 cut(s)	137, 230, 395, 452, 513, 542
Hpy8I	GTNNAC	1 cut(s)	777
HpyAV	CCTTC	2 cut(s)	30, 147
HpyCH4III	ACNGT	3 cut(s)	271, 362, 464
HpyCH4V	TGCA	8 cut(s)	299, 318, 335, 493, 509, 647, 659, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	484
HpyF3I	CTNAG	4 cut(s)	472, 540, 665, 715
Hsp92II	CATG	8 cut(s)	175, 299, 482, 493, 613, 657, 749, 787
HspAI	GCGC	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	7 cut(s)	16, 133, 226, 232, 439, 448, 857
LmnI	GCTCC	1 cut(s)	796
Lsp1109I	GCAGC	4 cut(s)	106, 316, 319, 859
LweI	GCATC	6 cut(s)	308, 518, 522, 641, 661, 874
MaeI	CTAG	4 cut(s)	158, 626, 861, 879
MaeIII	GTNAC	2 cut(s)	124, 271
MalI	GATC	7 cut(s)	18, 135, 228, 234, 441, 450, 859
MboI	GATC	7 cut(s)	16, 133, 226, 232, 439, 448, 857
MboII	GAAGA	3 cut(s)	90, 533, 568
MflI	RGATCY	2 cut(s)	448, 857
MluCI	AATT	6 cut(s)	51, 209, 563, 642, 699, 752
MlyI	GAGTC	1 cut(s)	568
MnlI	CCTC	4 cut(s)	509, 544, 781, 810
Mph1103I	ATGCAT	2 cut(s)	301, 495
MseI	TTAA	3 cut(s)	44, 755, 761
MspA1I	CMGCKG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	608
MvnI	CGCG	2 cut(s)	237, 313
MwoI	GCNNNNNNNGC	1 cut(s)	484
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	7 cut(s)	16, 133, 226, 232, 439, 448, 857
NlaIII	CATG	8 cut(s)	175, 299, 482, 493, 613, 657, 749, 787
NlaIV	GGNNCC	2 cut(s)	169, 450
NsbI	TGCGCA	1 cut(s)	488
NsiI	ATGCAT	2 cut(s)	301, 495
NspI	RCATGY	3 cut(s)	482, 493, 657
PaeI	GCATGC	1 cut(s)	493
PctI	GAATGC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	291
PkrI	GCNGC	4 cut(s)	121, 331, 334, 874
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PspN4I	GGNNCC	2 cut(s)	169, 450
PspPI	GGNCC	2 cut(s)	350, 695
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	2 cut(s)	448, 857
PvuII	CAGCTG	1 cut(s)	119
SaqAI	TTAA	3 cut(s)	44, 755, 761
SatI	GCNGC	4 cut(s)	120, 330, 333, 873
Sau3AI	GATC	7 cut(s)	16, 133, 226, 232, 439, 448, 857
Sau96I	GGNCC	2 cut(s)	350, 695
SchI	GAGTC	1 cut(s)	568
SetI	ASST	7 cut(s)	121, 166, 289, 520, 716, 847, 874
SfaNI	GCATC	6 cut(s)	308, 518, 522, 641, 661, 874
SinI	GGWCC	1 cut(s)	695
SphI	GCATGC	1 cut(s)	493
Sse9I	AATT	6 cut(s)	51, 209, 563, 642, 699, 752
SsiI	CCGC	2 cut(s)	189, 313
SspMI	CTAG	4 cut(s)	158, 626, 861, 879
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	3 cut(s)	271, 362, 464
TasI	AATT	6 cut(s)	51, 209, 563, 642, 699, 752
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	3 cut(s)	44, 755, 761
Tru9I	TTAA	3 cut(s)	44, 755, 761
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	4 cut(s)	119, 329, 332, 872
TspDTI	ATGAA	7 cut(s)	71, 222, 236, 354, 575, 598, 824
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	695
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	3 cut(s)	482, 493, 657
XspI	CTAG	4 cut(s)	158, 626, 861, 879
Zsp2I	ATGCAT	2 cut(s)	301, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.