Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007430

Physical Location & Seq

Genomic Coordinates Forward (+)

725286 .. 726990

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0011700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCGCTGCTTCTCAACCTAAGCTCGCCGTCCCCAACCTCATTCCAGTCGACTCGTCACCTCCCCACCACCACTCGCTCCCGCCAAAATGAAGCTGCCCAAGAATGGTCGTCTCTGCTCCACAACCTCAAGTCCCACGGCAGATTCTCTTGCCTCTTCTCAGGCAATCGCAGAGAGGACCAAGCACGGAAAGCATTAGAAGGTGCCCTGGGTGGAAAGAAAGATGAATTTGAGAAATGGGACAAAGAGATTAAGAAAAGAGAGGAGGTGGGTGGAGGCAGTAATGGTGGTGGAGGGGGCTGGATTGGGTGGGGCAGACGCTTGGGGTGGTCCAATGGTGACGATTTCTGGCAAGAAGCACAACAAGCAAGTCTTGCTGTCTTAGGCATTCTTGTGATGTATCTCATTGTTGTGAAAGGAGAGCTGATGCTTGCTGTCGTCTTCAATCCACTGTTGTATGCCTTGCGAGGGACAAGAAACGGGTTCACTTTCATTACTGACAAAATCTTAAGGAGGACAGATGATCATGCTTATATTGATAGTATCTCGAAGGAAGAAGCATATAGTCATGTATCCGCTAAAGAGAGTGTTGTGAAAAAATGGGGAAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

204

Amino Acids

22.76

Weight (kDa)

9.18

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46280 AT5G46280 AT5G46280 AT5G46280
fragaria_vesca	FvH4_3g05860
malus_domestica	MD05G1286600.v1.1 MD10G1264100.v1.1
prunus_persica	Prupe.4G078300_v2.0.a1
pyrus_communis	pycom10g22020
rosa_chinensis	RchiOBHm_Chr5g0013601 RchiOBHm_Chr5g0013661
rosa_laevigata	RLG00000032038
rosa_multiflora	Rmu_sc0002573.1_g000006 Rmu_sc0002573.1_g000015
rosa_roxburghii	Rroxscaffold_1G00062940
rosa_rugosa	Rorug05G0011700 Rorug05G0011800
rosa_samantha	Rh5AG106100 Rh5AG106300 Rh5BG102500 Rh5CG114000 Rh5CG114400 Rh5DG100800 Rh5DG101200
rosa_wichuraiana	Rw5G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	2 cut(s)	82, 576
AcsI	RAATTY	1 cut(s)	227
AfiI	CCNNNNNNNGG	2 cut(s)	105, 468
AflII	CTTAAG	1 cut(s)	508
AgsI	TTSAA	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	3 cut(s)	24, 95, 424
AluI	AGCT	3 cut(s)	24, 95, 424
Alw26I	GTCTC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	7, 95
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	178, 330
AsuHPI	GGTGA	2 cut(s)	50, 350
AvaII	GGWCC	2 cut(s)	178, 330
BaeGI	GKGCMC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	82
BceAI	ACGGC	2 cut(s)	13, 154
BciT130I	CCWGG	1 cut(s)	209
BciVI	GTATCC	1 cut(s)	583
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	508
BfuI	GTATCC	1 cut(s)	583
BisI	GCNGC	2 cut(s)	8, 96
BlsI	GCNGC	2 cut(s)	9, 97
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	2 cut(s)	178, 330
BmgT120I	GGNCC	2 cut(s)	178, 330
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	433
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	136, 207, 208
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 468
Bse1I	ACTGG	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	3 cut(s)	136, 207, 208
BseLI	CCNNNNNNNGG	2 cut(s)	105, 468
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	278
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	82
BshNI	GGYRCC	1 cut(s)	203
BslFI	GGGAC	4 cut(s)	16, 118, 254, 484
BslI	CCNNNNNNNGG	2 cut(s)	105, 468
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsmFI	GGGAC	4 cut(s)	16, 118, 254, 484
BsmI	GAATGC	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	523
BspACI	CCGC	2 cut(s)	82, 576
BspCNI	CTCAG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	203
BspTI	CTTAAG	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	46
BssECI	CCNNGG	3 cut(s)	136, 207, 208
BssMI	GATC	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	1 cut(s)	161
BstAFI	CTTAAG	1 cut(s)	508
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	26, 432
BstDEI	CTNAG	3 cut(s)	20, 160, 382
BstDSI	CCRYGG	1 cut(s)	136
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	526
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	523
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 365, 374
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	433
BsuI	GTATCC	1 cut(s)	583
BtgI	CCRYGG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	449
Cac8I	GCNNGC	2 cut(s)	26, 432
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	178, 330
CseI	GACGC	1 cut(s)	327
CviAII	CATG	2 cut(s)	527, 569
CviJI	RGCY	4 cut(s)	24, 95, 300, 424
CviKI_1	RGCY	4 cut(s)	24, 95, 300, 424
DdeI	CTNAG	3 cut(s)	20, 160, 382
DpnI	GATC	1 cut(s)	525
DpnII	GATC	1 cut(s)	523
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco47I	GGWCC	2 cut(s)	178, 330
EcoRII	CCWGG	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	2 cut(s)	530, 572
FaiI	YATR	6 cut(s)	459, 528, 534, 562, 564, 570
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	4 cut(s)	16, 118, 254, 484
FatI	CATG	2 cut(s)	526, 568
FauI	CCCGC	1 cut(s)	89
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	2 cut(s)	8, 96
Fsp4HI	GCNGC	2 cut(s)	8, 96
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	8, 96
HaeII	RGCGCY	1 cut(s)	8
HgaI	GACGC	1 cut(s)	327
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	2 cut(s)	530, 572
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	2 cut(s)	52, 144
HphI	GGTGA	2 cut(s)	50, 350
Hpy166II	GTNNAC	2 cut(s)	51, 486
Hpy188III	TCNNGA	1 cut(s)	547
Hpy8I	GTNNAC	2 cut(s)	51, 486
HpyAV	CCTTC	2 cut(s)	194, 544
HpyCH4III	ACNGT	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 365, 374
HpyF3I	CTNAG	3 cut(s)	20, 160, 382
Hsp92II	CATG	2 cut(s)	530, 572
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	1 cut(s)	523
LmnI	GCTCC	2 cut(s)	83, 123
LpnPI	CCDG	6 cut(s)	59, 147, 194, 221, 286, 334
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	417
MaeIII	GTNAC	2 cut(s)	56, 338
MalI	GATC	1 cut(s)	525
MboI	GATC	1 cut(s)	523
MboII	GAAGA	3 cut(s)	148, 433, 566
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	46
MseI	TTAA	2 cut(s)	252, 509
MslI	CAYNNNNRTG	2 cut(s)	392, 410
MspCI	CTTAAG	1 cut(s)	508
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	191, 365, 374
NdeII	GATC	1 cut(s)	523
NlaIII	CATG	2 cut(s)	530, 572
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	2 cut(s)	56, 338
PasI	CCCWGGG	1 cut(s)	208
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	9, 97
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	2 cut(s)	178, 330
RseI	CAYNNNNRTG	2 cut(s)	392, 410
SalI	GTCGAC	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	252, 509
SatI	GCNGC	2 cut(s)	8, 96
Sau3AI	GATC	1 cut(s)	523
Sau96I	GGNCC	2 cut(s)	178, 330
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	9 cut(s)	21, 26, 41, 63, 97, 129, 205, 270, 426
SfaNI	GCATC	1 cut(s)	417
SinI	GGWCC	2 cut(s)	178, 330
SmiMI	CAYNNNNRTG	2 cut(s)	392, 410
SmlI	CTYRAG	2 cut(s)	128, 508
SmoI	CTYRAG	2 cut(s)	128, 508
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	2 cut(s)	82, 576
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	453
TaqI	TCGA	2 cut(s)	50, 548
TasI	AATT	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	2 cut(s)	252, 509
Tru9I	TTAA	2 cut(s)	252, 509
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	2 cut(s)	56, 338
TseI	GCWGC	2 cut(s)	7, 95
Tsp45I	GTSAC	2 cut(s)	56, 338
TspDTI	ATGAA	3 cut(s)	105, 240, 481
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	1 cut(s)	456
Vha464I	CTTAAG	1 cut(s)	508
VpaK11BI	GGWCC	2 cut(s)	178, 330
XapI	RAATTY	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.