Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007430

Physical Location & Seq

Genomic Coordinates Forward (+)

9215146 .. 9217648

Gene Structure 2503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG100800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGTGGCTAATGCATTGGCAGGTTCTCTTGTGAGGCCAAAAGTTGTTAAGAGTGTTCATTTCTGCCCTACAACCGGAGACATTACATCCAACATGGGTTTGCCTACAGGAACAGTTTATCCCACCAGGACTTTGTCAATGCAAGAAGTGCCTGAAAACTCTGCTCCTGGTCAGCTCCCAAGAACAGTGGATGTCATAGTTGAGGATGGCCTTGTAGATAAGTGCAAACCAGGAGACCGTGTGGCTGTTGTAGGGATTTACAAAGCTCTTCCTGGTAAAAGTAAGGGAAGTGTGAACGGAGTATTCAGGACGGTTCTCATAGCTAACAATGTTACTCAGCTCAACAAAGAGGCACAATCGCCACAGTACAGTGCTGAAGACCTGACGAATATAAAAAATATAGCAGAGAGAGATGATGCATTTGATCTGCTTGGCAAGTCACTTGCACCTTCTATTTATGGGCATTCATGGATAAAGAAGGCAGTGATACTATTAATGCTTGGTGGAGTAGAAAAGAAATTAAAGAATGGAACCCATTTACGAGGTGACATTAATATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCTCAACTTTTAAGAGCAATTATGAATATCGTTCCATTGGCAATATCAACTACTGGTCGGGGTTCTTCTGGGGTTGGTTTGACAGCTGCTGTTACTTCAGATCAAGAGACAGGAGAGAGAAGGCTAGAAGCTGGTGCCATGGTTCTTGCTGATCGCGGTGTTTTCTGTATTGATGAATTTGACAAAATGAATGATCAAGATCGCGTTGCCATACATAAAGTTATGGAACAGCAGACTGTTACTATTGCCAAAGCTGGAATCCATGCATCTCTCAACACGTGGTGCAGTGTGGTGGCTGCTGCAAATCCCATATATGGCCCTTATGATCGTTCATTGACACCAACAAAGAATATCGGACTTCCAGACACTTTGCTTTCTCGTTTTGATTTGCTGTTTATTGTATTGGATCAAATGGATCCTGATATTGACCGTCAAGTCTCAGAGCATGTATTGCGCATGCATTGGTATCATTCTGCATCTGGAGGTGAAGAAATGTTGATGCGAACTCAGGATATGGAGGAGAAGATGAAATTGATAACGACTCCACCATATTTGTCAAAGCATAGGATTCAGCCTGATCTGACTGATGAGGCATCTGAACAAATTGCAACAGCATGTGCAGAACTCAGAGATGCCAGTTCAAATGCAAAGACTGGAGGAACACTTCCAATTACTGCCAGAACCTTAGAAACAATCATTCGTCTCTCAACTGCTCATGCGAAATTAAAGTTAAGCAGAAAGTTACCTCATCAGTTTTTAATTCTGAGAATTTTTCATGATGCTCTTTCAATCATCGAGGAAATGAGGATTATAGTTTTGTCATCAGCTTCTGTATTCTGTCATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

478

Amino Acids

52.11

Weight (kDa)

7.21

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_OB	PF17207	36 - 90	5.9e-14	MCM OB domain
MCM	PF00493	128 - 350	1.1e-92	MCM P-loop domain
Mg_chelatase	PF01078	234 - 300	1e-05	Magnesium chelatase, subunit ChlI
MCM_lid	PF17855	382 - 443	8.6e-14	MCM AAA-lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46280 AT5G46280 AT5G46280 AT5G46280
fragaria_vesca	FvH4_3g05860
malus_domestica	MD05G1286600.v1.1 MD10G1264100.v1.1
prunus_persica	Prupe.4G078300_v2.0.a1
pyrus_communis	pycom10g22020
rosa_chinensis	RchiOBHm_Chr5g0013601 RchiOBHm_Chr5g0013661
rosa_laevigata	RLG00000032038
rosa_multiflora	Rmu_sc0002573.1_g000006 Rmu_sc0002573.1_g000015
rosa_roxburghii	Rroxscaffold_1G00062940
rosa_rugosa	Rorug05G0011700 Rorug05G0011800
rosa_samantha	Rh5AG106100 Rh5AG106300 Rh5BG102500 Rh5CG114000 Rh5CG114400 Rh5DG100800 Rh5DG101200
rosa_wichuraiana	Rw5G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1022
Acc16I	TGCGCA	1 cut(s)	1043
Acc36I	ACCTGC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	722
AccII	CGCG	2 cut(s)	744, 792
AciI	CCGC	1 cut(s)	744
AclWI	GGATC	4 cut(s)	566, 998, 1002, 1011
AcsI	RAATTY	2 cut(s)	764, 1356
AcuI	CTGAAG	2 cut(s)	396, 669
AcvI	CACGTG	1 cut(s)	867
AdeI	CACNNNGTG	1 cut(s)	870
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	2 cut(s)	74, 902
AflIII	ACRYGT	1 cut(s)	864
AgsI	TTSAA	2 cut(s)	1230, 1377
AjnI	CCWGG	4 cut(s)	125, 166, 229, 271
AloI	GAACNNNNNNTCC	2 cut(s)	103, 135
AluBI	AGCT	8 cut(s)	175, 266, 323, 340, 674, 719, 842, 1415
AluI	AGCT	8 cut(s)	175, 266, 323, 340, 674, 719, 842, 1415
Alw26I	GTCTC	6 cut(s)	72, 228, 594, 689, 1030, 1295
AlwI	GGATC	4 cut(s)	566, 998, 1002, 1011
AlwNI	CAGNNNCTG	2 cut(s)	677, 1418
AoxI	GGCC	3 cut(s)	35, 208, 904
ApeKI	GCWGC	3 cut(s)	674, 884, 887
ApoI	RAATTY	2 cut(s)	764, 1356
AseI	ATTAAT	2 cut(s)	494, 552
AspLEI	GCGC	1 cut(s)	1044
AspS9I	GGNCC	1 cut(s)	905
AsuHPI	GGTGA	3 cut(s)	557, 581, 1085
BamHI	GGATCC	1 cut(s)	1003
BanI	GGYRCC	1 cut(s)	722
BbrPI	CACGTG	1 cut(s)	867
BbsI	GAAGAC	1 cut(s)	384
BbvI	GCAGC	3 cut(s)	661, 871, 874
BccI	CCATC	2 cut(s)	200, 556
BciT130I	CCWGG	4 cut(s)	127, 168, 231, 273
BclI	TGATCA	1 cut(s)	781
BcoDI	GTCTC	6 cut(s)	72, 228, 594, 689, 1030, 1295
BfaI	CTAG	1 cut(s)	713
BfmI	CTRYAG	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	3 cut(s)	675, 885, 888
BlsI	GCNGC	3 cut(s)	676, 886, 889
Bme1390I	CCNGG	4 cut(s)	127, 168, 231, 273
BmgT120I	GGNCC	1 cut(s)	905
BmiI	GGNNCC	3 cut(s)	532, 724, 1005
BmrFI	CCNGG	4 cut(s)	127, 168, 231, 273
BmsI	GCATC	7 cut(s)	406, 863, 1073, 1077, 1190, 1210, 1357
BpiI	GAAGAC	1 cut(s)	384
BpmI	CTGGAG	2 cut(s)	1089, 1263
BsaAI	YACGTR	1 cut(s)	867
BsaBI	GATNNNNATC	1 cut(s)	786
BsaI	GGTCTC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	726
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 902
Bse1I	ACTGG	3 cut(s)	646, 1224, 1246
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	4 cut(s)	127, 168, 231, 273
BseDI	CCNNGG	1 cut(s)	726
BseGI	GGATG	3 cut(s)	86, 196, 211
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	2 cut(s)	74, 902
BseMII	CTCAG	5 cut(s)	350, 1041, 1109, 1228, 1343
BseNI	ACTGG	3 cut(s)	646, 1224, 1246
BseRI	GAGGAG	1 cut(s)	1121
BseXI	GCAGC	3 cut(s)	661, 871, 874
BsgI	GTGCAG	2 cut(s)	892, 1227
Bsh1236I	CGCG	2 cut(s)	744, 792
BshFI	GGCC	3 cut(s)	37, 210, 906
BshNI	GGYRCC	1 cut(s)	722
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	74, 902
BsmAI	GTCTC	6 cut(s)	72, 228, 594, 689, 1030, 1295
BsmBI	CGTCTC	1 cut(s)	1295
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	3 cut(s)	37, 210, 906
Bso31I	GGTCTC	1 cut(s)	228
Bsp19I	CCATGG	1 cut(s)	726
BspACI	CCGC	1 cut(s)	744
BspANI	GGCC	3 cut(s)	37, 210, 906
BspCNI	CTCAG	5 cut(s)	349, 1040, 1108, 1227, 1344
BspFNI	CGCG	2 cut(s)	744, 792
BspHI	TCATGA	1 cut(s)	1363
BspLI	GGNNCC	3 cut(s)	532, 724, 1005
BspMI	ACCTGC	1 cut(s)	11
BspPI	GGATC	4 cut(s)	566, 998, 1002, 1011
BspQI	GCTCTTC	1 cut(s)	273
BspT107I	GGYRCC	1 cut(s)	722
BspTNI	GGTCTC	1 cut(s)	228
BsrI	ACTGG	3 cut(s)	646, 1224, 1246
BssECI	CCNNGG	1 cut(s)	726
BssT1I	CCWWGG	1 cut(s)	726
Bst2UI	CCWGG	4 cut(s)	127, 168, 231, 273
Bst4CI	ACNGT	8 cut(s)	115, 187, 239, 313, 366, 371, 826, 1019
Bst6I	CTCTTC	1 cut(s)	273
BstAPI	GCANNNNNTGC	2 cut(s)	148, 1039
BstBAI	YACGTR	1 cut(s)	867
BstC8I	GCNNGC	1 cut(s)	1046
BstDEI	CTNAG	6 cut(s)	336, 1027, 1095, 1214, 1273, 1352
BstDSI	CCRYGG	1 cut(s)	726
BstF5I	GGATG	3 cut(s)	86, 196, 211
BstFNI	CGCG	2 cut(s)	744, 792
BstHHI	GCGC	1 cut(s)	1044
BstMAI	GTCTC	6 cut(s)	72, 228, 594, 689, 1030, 1295
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 1039
BstNI	CCWGG	4 cut(s)	127, 168, 231, 273
BstNSI	RCATGY	3 cut(s)	1037, 1048, 1206
BstSCI	CCNGG	4 cut(s)	125, 166, 229, 271
BstSFI	CTRYAG	1 cut(s)	105
BstUI	CGCG	2 cut(s)	744, 792
BstV1I	GCAGC	3 cut(s)	661, 871, 874
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	1003
BstYI	RGATCY	1 cut(s)	1003
BsuRI	GGCC	3 cut(s)	37, 210, 906
BtgI	CCRYGG	1 cut(s)	726
BtsCI	GGATG	3 cut(s)	86, 196, 211
BtsI	GCAGTG	2 cut(s)	489, 880
BtsIMutI	CAGTG	4 cut(s)	192, 376, 489, 880
BveI	ACCTGC	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	1046
CaiI	CAGNNNCTG	2 cut(s)	677, 1418
CciI	TCATGA	1 cut(s)	1363
CfoI	GCGC	1 cut(s)	1044
Cfr13I	GGNCC	1 cut(s)	905
Csp6I	GTAC	1 cut(s)	367
CspCI	CAANNNNNGTGG	4 cut(s)	168, 203, 1122, 1157
CviAII	CATG	9 cut(s)	94, 468, 727, 851, 1034, 1045, 1203, 1304, 1364
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	6 cut(s)	336, 1027, 1095, 1214, 1273, 1352
DraIII	CACNNNGTG	1 cut(s)	870
DrdI	GACNNNNNNGTC	1 cut(s)	1022
DseDI	GACNNNNNNGTC	1 cut(s)	1022
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	726
Eco31I	GGTCTC	1 cut(s)	228
Eco57I	CTGAAG	2 cut(s)	396, 669
Eco72I	CACGTG	1 cut(s)	867
EcoRII	CCWGG	4 cut(s)	125, 166, 229, 271
EcoT14I	CCWWGG	1 cut(s)	726
EcoT22I	ATGCAT	4 cut(s)	16, 421, 856, 1050
ErhI	CCWWGG	1 cut(s)	726
Esp3I	CGTCTC	1 cut(s)	1295
FaeI	CATG	9 cut(s)	97, 471, 730, 854, 1037, 1048, 1206, 1307, 1367
FatI	CATG	9 cut(s)	93, 467, 726, 850, 1033, 1044, 1202, 1303, 1363
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	3 cut(s)	675, 885, 888
FokI	GGATG	3 cut(s)	73, 203, 218
Fsp4HI	GCNGC	3 cut(s)	675, 885, 888
FspBI	CTAG	1 cut(s)	713
FspI	TGCGCA	1 cut(s)	1043
GlaI	GCGC	1 cut(s)	1043
GluI	GCNGC	3 cut(s)	675, 885, 888
GsuI	CTGGAG	2 cut(s)	1089, 1263
HaeIII	GGCC	3 cut(s)	37, 210, 906
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	1044
Hin1II	CATG	9 cut(s)	97, 471, 730, 854, 1037, 1048, 1206, 1307, 1367
Hin6I	GCGC	1 cut(s)	1042
HinP1I	GCGC	1 cut(s)	1042
HinfI	GANTC	3 cut(s)	846, 1129, 1156
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	3 cut(s)	557, 581, 1085
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	8 cut(s)	688, 944, 1030, 1170, 1186, 1217, 1353, 1436
Hpy188III	TCNNGA	8 cut(s)	307, 692, 785, 950, 1007, 1068, 1097, 1364
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	4 cut(s)	459, 472, 585, 702
HpyCH4III	ACNGT	8 cut(s)	115, 187, 239, 313, 366, 371, 826, 1019
HpyCH4IV	ACGT	1 cut(s)	866
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 1039
HpyF3I	CTNAG	6 cut(s)	336, 1027, 1095, 1214, 1273, 1352
HpySE526I	ACGT	1 cut(s)	866
Hsp92II	CATG	9 cut(s)	97, 471, 730, 854, 1037, 1048, 1206, 1307, 1367
HspAI	GCGC	1 cut(s)	1042
Ksp22I	TGATCA	1 cut(s)	781
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	2 cut(s)	169, 180
Lsp1109I	GCAGC	3 cut(s)	661, 871, 874
LweI	GCATC	7 cut(s)	406, 863, 1073, 1077, 1190, 1210, 1357
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	1 cut(s)	866
MaeIII	GTNAC	6 cut(s)	331, 438, 545, 679, 826, 1329
MboII	GAAGA	5 cut(s)	260, 389, 645, 1088, 1123
MflI	RGATCY	1 cut(s)	1003
MluCI	AATT	9 cut(s)	518, 606, 764, 1118, 1191, 1257, 1310, 1347, 1356
MlyI	GAGTC	1 cut(s)	1123
MmeI	TCCRAC	1 cut(s)	114
Mph1103I	ATGCAT	4 cut(s)	16, 421, 856, 1050
MseI	TTAA	8 cut(s)	48, 494, 521, 552, 599, 1313, 1319, 1346
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	4 cut(s)	127, 168, 231, 273
Mva1269I	GAATGC	1 cut(s)	463
MvaI	CCWGG	4 cut(s)	127, 168, 231, 273
MvnI	CGCG	2 cut(s)	744, 792
MwoI	GCNNNNNNNGC	2 cut(s)	148, 1039
NcoI	CCATGG	1 cut(s)	726
NlaIII	CATG	9 cut(s)	97, 471, 730, 854, 1037, 1048, 1206, 1307, 1367
NlaIV	GGNNCC	3 cut(s)	532, 724, 1005
NmuCI	GTSAC	2 cut(s)	438, 545
NsbI	TGCGCA	1 cut(s)	1043
NsiI	ATGCAT	4 cut(s)	16, 421, 856, 1050
NspI	RCATGY	3 cut(s)	1037, 1048, 1206
PaeI	GCATGC	1 cut(s)	1048
PagI	TCATGA	1 cut(s)	1363
PciSI	GCTCTTC	1 cut(s)	273
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	846, 1156
PflFI	GACNNNGTC	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	676, 886, 889
PleI	GAGTC	1 cut(s)	1123
PmaCI	CACGTG	1 cut(s)	867
PmlI	CACGTG	1 cut(s)	867
PpsI	GAGTC	1 cut(s)	1123
Ppu21I	YACGTR	1 cut(s)	867
PshBI	ATTAAT	2 cut(s)	494, 552
Psp6I	CCWGG	4 cut(s)	125, 166, 229, 271
PspCI	CACGTG	1 cut(s)	867
PspGI	CCWGG	4 cut(s)	125, 166, 229, 271
PspN4I	GGNNCC	3 cut(s)	532, 724, 1005
PspPI	GGNCC	1 cut(s)	905
PstNI	CAGNNNCTG	2 cut(s)	677, 1418
PsuI	RGATCY	1 cut(s)	1003
PsyI	GACNNNGTC	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	554
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	8 cut(s)	48, 494, 521, 552, 599, 1313, 1319, 1346
SatI	GCNGC	3 cut(s)	675, 885, 888
Sau96I	GGNCC	1 cut(s)	905
SchI	GAGTC	1 cut(s)	1123
ScrFI	CCNGG	4 cut(s)	127, 168, 231, 273
SfaNI	GCATC	7 cut(s)	406, 863, 1073, 1077, 1190, 1210, 1357
SfcI	CTRYAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	554
SphI	GCATGC	1 cut(s)	1048
Sse9I	AATT	9 cut(s)	518, 606, 764, 1118, 1191, 1257, 1310, 1347, 1356
SsiI	CCGC	1 cut(s)	744
SspMI	CTAG	1 cut(s)	713
StyD4I	CCNGG	4 cut(s)	125, 166, 229, 271
StyI	CCWWGG	1 cut(s)	726
TaaI	ACNGT	8 cut(s)	115, 187, 239, 313, 366, 371, 826, 1019
TaiI	ACGT	1 cut(s)	869
TaqI	TCGA	1 cut(s)	1383
TasI	AATT	9 cut(s)	518, 606, 764, 1118, 1191, 1257, 1310, 1347, 1356
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	2 cut(s)	846, 1156
Tru1I	TTAA	8 cut(s)	48, 494, 521, 552, 599, 1313, 1319, 1346
Tru9I	TTAA	8 cut(s)	48, 494, 521, 552, 599, 1313, 1319, 1346
TscAI	CASTG	4 cut(s)	192, 376, 489, 880
TseFI	GTSAC	2 cut(s)	438, 545
TseI	GCWGC	3 cut(s)	674, 884, 887
Tsp45I	GTSAC	2 cut(s)	438, 545
TspDTI	ATGAA	8 cut(s)	47, 456, 626, 777, 791, 909, 1130, 1352
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	4 cut(s)	192, 376, 489, 880
Tth111I	GACNNNGTC	1 cut(s)	133
VspI	ATTAAT	2 cut(s)	494, 552
XapI	RAATTY	2 cut(s)	764, 1356
XceI	RCATGY	3 cut(s)	1037, 1048, 1206
XspI	CTAG	1 cut(s)	713
Zsp2I	ATGCAT	4 cut(s)	16, 421, 856, 1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.