Prupe.4G087400_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013500
Physical Location & Seq
Forward (+)
4291515 .. 4293945
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G087400.1

Sequence Viewer

Length: 1872 bp
ATGCTCCCAAAACAGCCCTCACTCCTCCACCCATCTTTTCCACATACATTCTCAGCAAAAACCTTTACTCACAACCCCAAAACCCTCTTCTCTTCACTTTCAGCCCCCTCACCAACTTTCCCACAAAACCCAATACACTACATTCTCCAAAAGTGCATTGCTCTCTTGCAATGCTGTGCATCCTCCAAGTTGAAGATGCAGCAAATCCATGCCTTCTCTGTAAGGCATGGTGTTCCACTCAGCAGCCCAGACATGGGCAAACACCTCATTTTCACCACTGTGTCTCTCAAAGCCCCTATGCCCTATGCCCACCAGATATTTTCCCAAATCAGAAGCCCTAATGTCTTCACATGGAACACCATGATTAGAGGATATGCTGAGAGTGAGAACCCAACTCCTGTTCTTCAACTTTACCACCAAATGCATGTGAATTCTGTGGAACCTGATACACACACTTACCCTTTTCTTCTAAAGGCTGTGGCTAAGTTGACGAATGTTAGAGAGGGTGAGAAGATACATTCCATTGCTCTGAGAAATGGGTTTGAGTCATTGGTCTTTGTTAAGAACACTTTGCTTCACATGTATGCATGTTGTGGCCATGTTGAGAGTGCACACAGGGTGTTTGAGTCAATCTCTGAGAGAGACCTTGTTGCTTGGAATTCTGTGATTAATGGGTTTGCTTTGAACGGGAGGCCCAATGAGGCTTTGACTGTTTTCAGGGATATGAGTTTGGAGGGTGTTCAGCCAGATGGGTTCACCATGGTTAGCTTGTTGTCTGCTTGTGCTGAGCTTGGAACTTTGGCTTTGGGTAGGAGGATCCATGTGTATATGCTGAAGGTGGGCTTGACCGGGAATTCACATGCTACTAATGCCCTTCTGGACCTTTATGCAAAGTGTGGGAACATCAGAGAGGCACAAAAGGTGTTCAAAACGATGGACGAAAGGAGTGTGGTTTCGTGGACTGCTTTAGTTGTTGGGTTGGCTGTTAACGGGTTTGGTAATGAAGCACTTGAGCATTTCCAGGAATTGAGGAGAGAGGGATTGGTGCCTACTGAGATCACTTTTGTTGGGGTCTTGTATGCCTGTAGTCATTGCGGGATGGTTGATGAAGGATTCAATTACTTTAGAATGATGAAAGAGGAGTATGGAATTGTCCCCAGAATAGAACATTATGGTTGCATGATTGATTTGTTAGGTAGGGCTGGCTTAGTGAAAGAAGCATATGAATACATTAACAACATGCCCATGCAGCCCAATGCTGTTATATGGAGGACCTTGTTAGGAGCATGCACAATACACGGGCACTTGGCTCTCGGAGAGACTGCAAGAGCCCACATCCGAGAATTAGAGCCTGGACATAGTGGAGATTATGTGCTCCTCTCCAATCTCTATGCATCTGAGCGTCGTTGGTCAGATGTGCAAAAGGTGAGGAGGACAATGCTTAGTGATGGGGTGAGGAAAACTCCAGGGTATAGCATTGTTGAGTTGAGGAATTGTATTTATGAGTTTACGATGGGTGATAGATCTCATCCCCAAAGTGAAAAGATATACACAATGCTAGCAGAGATCACAAATCTGTTGAAACCGAAAGGGTACGTGCCTCATACAGAAAATGTTCTTGCAGACATAGAGGAGGAGGAAAAAGAATATGCATTGTCCTACCATAGTGAAAAAATTGCAATTGCCTTTATGATCCTAAATACTGCACCAGGGATCCCAATTAGGATTTGGAAGAATTTGAGAGTTTGTGCAGACTGTCATCTTGCAATTAAACTCATATCCAAGGTTTATGACCGGGAGATTGTTGTGAGGGATCGTAGTCGATTTCACCATTTCAGAGATGGTTCTTGTTCTTGTAGAGATTACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 X8

Protein Analysis

624

Amino Acids

70.43

Weight (kDa)

8.23

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21065 AT4G21065
fragaria_vesca FvH4_3g09500
malus_domestica MD05G1277300.v1.1 MD10G1256200.v1.1
prunus_persica Prupe.4G087400_v2.0.a1
pyrus_communis pycom05g25840 pycom10g21200
rosa_chinensis RchiOBHm_Chr5g0015081
rosa_laevigata RLG00000032168
rosa_multiflora Rmu_co8160296.1_g000001 Rmu_sc0002209.1_g000002 Rmu_sc0009777.1_g000014 Rmu_sc0036572.1_g000001
rosa_roxburghii Rroxscaffold_1G00061450
rosa_rugosa Rorug05G0024200
rosa_samantha Rh5CG127500
rosa_wichuraiana Rw5G010250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1045
AciI CCGC 1 cut(s) 1095
AclWI GGATC 6 cut(s) 811, 824, 1687, 1708, 1721, 1821
AcoI YGGCCR 1 cut(s) 595
AcsI RAATTY 4 cut(s) 430, 658, 853, 1735
AcuI CTGAAG 1 cut(s) 854
AdeI CACNNNGTG 1 cut(s) 619
AfaI GTAC 1 cut(s) 1595
AfiI CCNNNNNNNGG 2 cut(s) 253, 254
AflIII ACRYGT 1 cut(s) 579
AgsI TTSAA 6 cut(s) 193, 407, 685, 928, 1117, 1582
AjnI CCWGG 4 cut(s) 1020, 1351, 1465, 1708
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 2 cut(s) 768, 790
AluI AGCT 2 cut(s) 768, 790
Alw21I GWGCWC 2 cut(s) 613, 1377
Alw26I GTCTC 3 cut(s) 288, 636, 1313
Alw44I GTGCAC 1 cut(s) 609
AlwI GGATC 6 cut(s) 811, 824, 1687, 1708, 1721, 1821
AoxI GGCC 2 cut(s) 595, 692
ApaLI GTGCAC 1 cut(s) 609
ApeKI GCWGC 3 cut(s) 199, 243, 1249
ApoI RAATTY 4 cut(s) 430, 658, 853, 1735
AseI ATTAAT 1 cut(s) 669
Asp700I GAANNNNTTC 1 cut(s) 1614
AspS9I GGNCC 3 cut(s) 693, 880, 1272
AsuC2I CCSGG 2 cut(s) 850, 1796
AsuHPI GGTGA 8 cut(s) 102, 265, 518, 748, 1438, 1465, 1529, 1820
AsuNHI GCTAGC 1 cut(s) 1558
AvaII GGWCC 2 cut(s) 880, 1272
BaeGI GKGCMC 2 cut(s) 613, 1305
BalI TGGCCA 1 cut(s) 597
BamHI GGATCC 2 cut(s) 816, 1713
BanI GGYRCC 1 cut(s) 1045
BanII GRGCYC 1 cut(s) 1333
BbsI GAAGAC 1 cut(s) 337
Bbv12I GWGCWC 2 cut(s) 613, 1377
BbvI GCAGC 3 cut(s) 211, 255, 1261
BccI CCATC 7 cut(s) 40, 743, 928, 1093, 1442, 1507, 1835
BciT130I CCWGG 4 cut(s) 1022, 1353, 1467, 1710
BcnI CCSGG 2 cut(s) 850, 1796
BcoDI GTCTC 3 cut(s) 288, 636, 1313
BfaI CTAG 1 cut(s) 1559
BfmI CTRYAG 1 cut(s) 1084
BglII AGATCT 1 cut(s) 1523
BisI GCNGC 3 cut(s) 200, 244, 1250
BlpI GCTNAGC 1 cut(s) 786
BlsI GCNGC 3 cut(s) 201, 245, 1251
Bme1390I CCNGG 6 cut(s) 850, 1022, 1353, 1467, 1710, 1796
Bme18I GGWCC 2 cut(s) 880, 1272
BmgT120I GGNCC 3 cut(s) 693, 880, 1272
BmiI GGNNCC 4 cut(s) 441, 818, 1047, 1715
BmrFI CCNGG 6 cut(s) 850, 1022, 1353, 1467, 1710, 1796
BmsI GCATC 3 cut(s) 186, 188, 1403
BmtI GCTAGC 1 cut(s) 1562
BpiI GAAGAC 1 cut(s) 337
BplI GAGNNNNNCTC 4 cut(s) 617, 649, 1447, 1479
BpmI CTGGAG 1 cut(s) 1449
Bpu1102I GCTNAGC 1 cut(s) 786
BpuEI CTTGAG 1 cut(s) 1031
BpuMI CCSGG 2 cut(s) 850, 1796
BsaAI YACGTR 1 cut(s) 1597
BsaI GGTCTC 1 cut(s) 636
BsaJI CCNNGG 4 cut(s) 759, 1466, 1709, 1782
BsaXI ACNNNNNCTCC 2 cut(s) 1356, 1386
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 254
Bse1I ACTGG 1 cut(s) 1871
Bse3DI GCAATG 4 cut(s) 156, 176, 522, 1090
BseBI CCWGG 4 cut(s) 1022, 1353, 1467, 1710
BseDI CCNNGG 4 cut(s) 759, 1466, 1709, 1782
BseGI GGATG 4 cut(s) 179, 1104, 1335, 1528
BseLI CCNNNNNNNGG 2 cut(s) 253, 254
BseMI GCAATG 4 cut(s) 156, 176, 522, 1090
BseMII CTCAG 8 cut(s) 66, 253, 369, 521, 627, 777, 1044, 1389
BseNI ACTGG 1 cut(s) 1871
BseRI GAGGAG 7 cut(s) 14, 1045, 1154, 1367, 1444, 1646, 1649
BseSI GKGCMC 2 cut(s) 613, 1305
BseXI GCAGC 3 cut(s) 211, 255, 1261
BsgI GTGCAG 2 cut(s) 1689, 1770
BshFI GGCC 2 cut(s) 597, 694
BshNI GGYRCC 1 cut(s) 1045
BsiHKAI GWGCWC 2 cut(s) 613, 1377
BsiSI CCGG 2 cut(s) 849, 1795
BslFI GGGAC 1 cut(s) 1139
BslI CCNNNNNNNGG 2 cut(s) 253, 254
BsmAI GTCTC 3 cut(s) 288, 636, 1313
BsmFI GGGAC 1 cut(s) 1139
BsnI GGCC 2 cut(s) 597, 694
Bso31I GGTCTC 1 cut(s) 636
Bsp1286I GDGCHC 4 cut(s) 613, 1305, 1333, 1377
Bsp143I GATC 7 cut(s) 816, 1056, 1523, 1566, 1692, 1713, 1813
Bsp1720I GCTNAGC 1 cut(s) 786
Bsp19I CCATGG 1 cut(s) 759
BspACI CCGC 1 cut(s) 1095
BspANI GGCC 2 cut(s) 597, 694
BspCNI CTCAG 8 cut(s) 65, 252, 370, 522, 628, 778, 1045, 1390
BspLI GGNNCC 4 cut(s) 441, 818, 1047, 1715
BspOI GCTAGC 1 cut(s) 1562
BspPI GGATC 6 cut(s) 811, 824, 1687, 1708, 1721, 1821
BspT107I GGYRCC 1 cut(s) 1045
BspTNI GGTCTC 1 cut(s) 636
BsrDI GCAATG 4 cut(s) 156, 176, 522, 1090
BsrI ACTGG 1 cut(s) 1871
BssECI CCNNGG 4 cut(s) 759, 1466, 1709, 1782
BssMI GATC 7 cut(s) 816, 1056, 1523, 1566, 1692, 1713, 1813
BssT1I CCWWGG 2 cut(s) 759, 1782
Bst2UI CCWGG 4 cut(s) 1022, 1353, 1467, 1710
Bst4CI ACNGT 3 cut(s) 280, 712, 1757
Bst6I CTCTTC 2 cut(s) 92, 97
BstBAI YACGTR 1 cut(s) 1597
BstC8I GCNNGC 3 cut(s) 1204, 1288, 1560
BstDSI CCRYGG 1 cut(s) 759
BstF5I GGATG 4 cut(s) 179, 1104, 1335, 1528
BstKTI GATC 7 cut(s) 819, 1059, 1526, 1569, 1695, 1716, 1816
BstMAI GTCTC 3 cut(s) 288, 636, 1313
BstMBI GATC 7 cut(s) 816, 1056, 1523, 1566, 1692, 1713, 1813
BstMWI GCNNNNNNNGC 2 cut(s) 869, 1249
BstNI CCWGG 4 cut(s) 1022, 1353, 1467, 1710
BstNSI RCATGY 6 cut(s) 428, 583, 591, 863, 1243, 1290
BstSCI CCNGG 6 cut(s) 848, 1020, 1351, 1465, 1708, 1794
BstSFI CTRYAG 1 cut(s) 1084
BstSLI GKGCMC 2 cut(s) 613, 1305
BstV1I GCAGC 3 cut(s) 211, 255, 1261
BstV2I GAAGAC 1 cut(s) 337
BstX2I RGATCY 3 cut(s) 816, 1523, 1713
BstYI RGATCY 3 cut(s) 816, 1523, 1713
BsuRI GGCC 2 cut(s) 597, 694
BtgI CCRYGG 1 cut(s) 759
BtsCI GGATG 4 cut(s) 179, 1104, 1335, 1528
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 3 cut(s) 1204, 1288, 1560
Cfr13I GGNCC 3 cut(s) 693, 880, 1272
CseI GACGC 1 cut(s) 1391
Csp6I GTAC 1 cut(s) 1594
CviQI GTAC 1 cut(s) 1594
DpnI GATC 7 cut(s) 818, 1058, 1525, 1568, 1694, 1715, 1815
DpnII GATC 7 cut(s) 816, 1056, 1523, 1566, 1692, 1713, 1813
DraIII CACNNNGTG 1 cut(s) 619
EaeI YGGCCR 1 cut(s) 595
Eam1104I CTCTTC 2 cut(s) 92, 97
EarI CTCTTC 2 cut(s) 92, 97
Eco130I CCWWGG 2 cut(s) 759, 1782
Eco24I GRGCYC 1 cut(s) 1333
Eco31I GGTCTC 1 cut(s) 636
Eco47I GGWCC 2 cut(s) 880, 1272
Eco57I CTGAAG 1 cut(s) 854
EcoO109I RGGNCCY 1 cut(s) 1272
EcoRI GAATTC 3 cut(s) 430, 658, 853
EcoRII CCWGG 4 cut(s) 1020, 1351, 1465, 1708
EcoT14I CCWWGG 2 cut(s) 759, 1782
EcoT22I ATGCAT 4 cut(s) 426, 589, 1396, 1654
EcoT38I GRGCYC 1 cut(s) 1333
ErhI CCWWGG 2 cut(s) 759, 1782
FalI AAGNNNNNCTT 2 cut(s) 827, 859
FaqI GGGAC 1 cut(s) 1139
FauI CCCGC 1 cut(s) 1088
FauNDI CATATG 1 cut(s) 1222
Fnu4HI GCNGC 3 cut(s) 200, 244, 1250
FokI GGATG 4 cut(s) 166, 1111, 1322, 1515
FriOI GRGCYC 1 cut(s) 1333
Fsp4HI GCNGC 3 cut(s) 200, 244, 1250
FspBI CTAG 1 cut(s) 1559
GluI GCNGC 3 cut(s) 200, 244, 1250
GsuI CTGGAG 1 cut(s) 1449
HaeIII GGCC 2 cut(s) 597, 694
HapII CCGG 2 cut(s) 849, 1795
HgaI GACGC 1 cut(s) 1391
HincII GTYRAC 2 cut(s) 489, 988
HindII GTYRAC 2 cut(s) 489, 988
HinfI GANTC 3 cut(s) 545, 626, 1113
HpaI GTTAAC 1 cut(s) 988
HpaII CCGG 2 cut(s) 849, 1795
HphI GGTGA 8 cut(s) 102, 265, 518, 748, 1438, 1465, 1529, 1820
Hpy166II GTNNAC 6 cut(s) 489, 611, 756, 960, 988, 1509
Hpy188I TCNGA 9 cut(s) 332, 531, 637, 908, 1316, 1340, 1399, 1414, 1838
Hpy188III TCNNGA 1 cut(s) 878
Hpy8I GTNNAC 6 cut(s) 489, 611, 756, 960, 988, 1509
Hpy99I CGWCG 1 cut(s) 1407
HpyAV CCTTC 4 cut(s) 223, 829, 884, 1103
HpyCH4III ACNGT 3 cut(s) 280, 712, 1757
HpyCH4IV ACGT 1 cut(s) 1596
HpyF10VI GCNNNNNNNGC 2 cut(s) 869, 1249
HpySE526I ACGT 1 cut(s) 1596
KspAI GTTAAC 1 cut(s) 988
Kzo9I GATC 7 cut(s) 816, 1056, 1523, 1566, 1692, 1713, 1813
LmnI GCTCC 3 cut(s) 9, 1283, 1380
Lsp1109I GCAGC 3 cut(s) 211, 255, 1261
LweI GCATC 3 cut(s) 186, 188, 1403
MaeI CTAG 1 cut(s) 1559
MaeII ACGT 1 cut(s) 1596
MalI GATC 7 cut(s) 818, 1058, 1525, 1568, 1694, 1715, 1815
MboI GATC 7 cut(s) 816, 1056, 1523, 1566, 1692, 1713, 1813
MboII GAAGA 8 cut(s) 79, 84, 205, 337, 395, 458, 523, 1744
MfeI CAATTG 1 cut(s) 1680
MflI RGATCY 3 cut(s) 816, 1523, 1713
MhlI GDGCHC 4 cut(s) 613, 1305, 1333, 1377
MlsI TGGCCA 1 cut(s) 597
MluNI TGGCCA 1 cut(s) 597
MlyI GAGTC 2 cut(s) 554, 635
Mox20I TGGCCA 1 cut(s) 597
Mph1103I ATGCAT 4 cut(s) 426, 589, 1396, 1654
MroXI GAANNNNTTC 1 cut(s) 1614
MscI TGGCCA 1 cut(s) 597
MseI TTAA 5 cut(s) 561, 669, 987, 1233, 1770
MslI CAYNNNNRTG 3 cut(s) 278, 582, 1244
Msp20I TGGCCA 1 cut(s) 597
MspI CCGG 2 cut(s) 849, 1795
MspR9I CCNGG 6 cut(s) 850, 1022, 1353, 1467, 1710, 1796
MunI CAATTG 1 cut(s) 1680
MvaI CCWGG 4 cut(s) 1022, 1353, 1467, 1710
MwoI GCNNNNNNNGC 2 cut(s) 869, 1249
NciI CCSGG 2 cut(s) 850, 1796
NcoI CCATGG 1 cut(s) 759
NdeI CATATG 1 cut(s) 1222
NdeII GATC 7 cut(s) 816, 1056, 1523, 1566, 1692, 1713, 1813
NheI GCTAGC 1 cut(s) 1558
NlaIV GGNNCC 4 cut(s) 441, 818, 1047, 1715
NsiI ATGCAT 4 cut(s) 426, 589, 1396, 1654
NspI RCATGY 6 cut(s) 428, 583, 591, 863, 1243, 1290
OliI CACNNNNGTG 1 cut(s) 278
PaeI GCATGC 1 cut(s) 1290
PciI ACATGT 1 cut(s) 579
PdmI GAANNNNTTC 1 cut(s) 1614
PfeI GAWTC 1 cut(s) 1113
PfoI TCCNGGA 1 cut(s) 1020
PkrI GCNGC 3 cut(s) 201, 245, 1251
PleI GAGTC 2 cut(s) 553, 634
PpsI GAGTC 2 cut(s) 553, 634
Ppu21I YACGTR 1 cut(s) 1597
PpuMI RGGWCCY 1 cut(s) 1272
PscI ACATGT 1 cut(s) 579
PshBI ATTAAT 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 1272
Psp6I CCWGG 4 cut(s) 1020, 1351, 1465, 1708
PspGI CCWGG 4 cut(s) 1020, 1351, 1465, 1708
PspN4I GGNNCC 4 cut(s) 441, 818, 1047, 1715
PspPI GGNCC 3 cut(s) 693, 880, 1272
PspPPI RGGWCCY 1 cut(s) 1272
PsuI RGATCY 3 cut(s) 816, 1523, 1713
RsaI GTAC 1 cut(s) 1595
RsaNI GTAC 1 cut(s) 1594
RseI CAYNNNNRTG 3 cut(s) 278, 582, 1244
SaqAI TTAA 5 cut(s) 561, 669, 987, 1233, 1770
SatI GCNGC 3 cut(s) 200, 244, 1250
Sau3AI GATC 7 cut(s) 816, 1056, 1523, 1566, 1692, 1713, 1813
Sau96I GGNCC 3 cut(s) 693, 880, 1272
SchI GAGTC 2 cut(s) 554, 635
ScrFI CCNGG 6 cut(s) 850, 1022, 1353, 1467, 1710, 1796
SduI GDGCHC 4 cut(s) 613, 1305, 1333, 1377
SfaNI GCATC 3 cut(s) 186, 188, 1403
SfcI CTRYAG 1 cut(s) 1084
SinI GGWCC 2 cut(s) 880, 1272
SmiMI CAYNNNNRTG 3 cut(s) 278, 582, 1244
SmlI CTYRAG 1 cut(s) 1010
SmoI CTYRAG 1 cut(s) 1010
SphI GCATGC 1 cut(s) 1290
SsiI CCGC 1 cut(s) 1095
SspMI CTAG 1 cut(s) 1559
StyD4I CCNGG 6 cut(s) 848, 1020, 1351, 1465, 1708, 1794
StyI CCWWGG 2 cut(s) 759, 1782
TaaI ACNGT 3 cut(s) 280, 712, 1757
TaiI ACGT 1 cut(s) 1599
TaqI TCGA 1 cut(s) 1822
TfiI GAWTC 1 cut(s) 1113
Tru1I TTAA 5 cut(s) 561, 669, 987, 1233, 1770
Tru9I TTAA 5 cut(s) 561, 669, 987, 1233, 1770
TscAI CASTG 1 cut(s) 283
TseI GCWGC 3 cut(s) 199, 243, 1249
TspDTI ATGAA 4 cut(s) 1017, 1122, 1148, 1239
TspRI CASTG 1 cut(s) 283
VneI GTGCAC 1 cut(s) 609
VpaK11BI GGWCC 2 cut(s) 880, 1272
VspI ATTAAT 1 cut(s) 669
XapI RAATTY 4 cut(s) 430, 658, 853, 1735
XceI RCATGY 6 cut(s) 428, 583, 591, 863, 1243, 1290
XcmI CCANNNNNNNNNTGG 2 cut(s) 1725, 1838
XmnI GAANNNNTTC 1 cut(s) 1614
XspI CTAG 1 cut(s) 1559
Zsp2I ATGCAT 4 cut(s) 426, 589, 1396, 1654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.