Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013500

Physical Location & Seq

Genomic Coordinates Reverse (-)

23906145 .. 23906918

Gene Structure 774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g21200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGTCGATGAAGGGTTTAATTACTTTCGAATGATGAAAGAGGAGTATGGAATTTCACCGAGAATAGAACATTATGGTTGCCTGGTTGATTTATTAGGTAGAGCAGGCTTAGTAAAAGAAGCATACGAATACATTATGAATATGCCTGTGCAGCCAAATGCTGTTATTTGGAGGACCTTATTAGGAGCGTGCACGATACACGGGCAGCTCGCCCTTGGAGAGACTGCAAGAGCGCACATTCGAGAGTTAGAGCCCGGACATAGTGGGGATTATGTGCTCCTATCCAATCTCCACGCATCTGAACGCCGTTGGTTAGATGTTCAGAAGGTGAGGAGGACAATGTTTAGTGAAGGGGTGAGGAAAACTCTCGGATACAGTATTGTTGAGCTGAGGAATTGTATTTTTGAGTTCACTATGGGTGACAGATCTCATCCACAAAGTGAAGAGATATACGCAACGCTAGCAGATATCACACGATTGTTGAAACTGGAAGGGTATGTGCCTCATACAACAAATGTTCTTGCAGACATAGAGGAGGAGGAAGAAGTAAATGCTTTGTCCTATCATAGTGAAAAGATCGCAATTGCATTTATGCTCCTTAATACTGCACCAGGGATGCCGATTAGGATTTGGAAGAATTTGAGAGTTTGCGCAGATTGTCATCTTGCAATTAAACTCATATCGAAGGTTTATGACCGAGAGATTGTTGTGAGGGATCGTAGTTGGTTTCACCATTTTAGATATGGTAATTGTTCTTGTAGAGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 X8

Protein Analysis

258

Amino Acids

29.79

Weight (kDa)

6.27

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	67 - 129	2.4e-15	E motif
Eplus_motif	PF20430	135 - 159	5e-08	E+ motif
DYW_deaminase	PF14432	165 - 257	9.5e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21065 AT4G21065
fragaria_vesca	FvH4_3g09500
malus_domestica	MD05G1277300.v1.1 MD10G1256200.v1.1
prunus_persica	Prupe.4G087400_v2.0.a1
pyrus_communis	pycom05g25840 pycom10g21200
rosa_chinensis	RchiOBHm_Chr5g0015081
rosa_laevigata	RLG00000032168
rosa_multiflora	Rmu_co8160296.1_g000001 Rmu_sc0002209.1_g000002 Rmu_sc0009777.1_g000014 Rmu_sc0036572.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061450
rosa_rugosa	Rorug05G0024200
rosa_samantha	Rh5CG127500
rosa_wichuraiana	Rw5G010250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	652
AclWI	GGATC	1 cut(s)	723
AcsI	RAATTY	2 cut(s)	51, 637
AdeI	CACNNNGTG	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	484
AjnI	CCWGG	2 cut(s)	81, 610
AluBI	AGCT	2 cut(s)	208, 388
AluI	AGCT	2 cut(s)	208, 388
Alw21I	GWGCWC	2 cut(s)	194, 279
Alw26I	GTCTC	1 cut(s)	215
Alw44I	GTGCAC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	723
ApaLI	GTGCAC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	151, 205
ApoI	RAATTY	2 cut(s)	51, 637
AspLEI	GCGC	2 cut(s)	235, 653
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	5 cut(s)	48, 340, 367, 431, 722
AsuII	TTCGAA	1 cut(s)	28
AsuNHI	GCTAGC	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	2 cut(s)	194, 279
BbvCI	CCTCAGC	1 cut(s)	389
BbvI	GCAGC	2 cut(s)	163, 217
BceAI	ACGGC	1 cut(s)	291
BciT130I	CCWGG	2 cut(s)	83, 612
BciVI	GTATCC	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	461
BfuI	GTATCC	1 cut(s)	365
BglII	AGATCT	1 cut(s)	425
BisI	GCNGC	2 cut(s)	152, 206
BlsI	GCNGC	2 cut(s)	153, 207
Bme1390I	CCNGG	3 cut(s)	83, 255, 612
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmrFI	CCNGG	3 cut(s)	83, 255, 612
BmsI	GCATC	2 cut(s)	305, 606
BmtI	GCTAGC	1 cut(s)	464
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
Bpu10I	CCTNAGC	1 cut(s)	389
Bpu14I	TTCGAA	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	660
BsaJI	CCNNGG	2 cut(s)	214, 611
Bse1I	ACTGG	2 cut(s)	492, 773
Bse8I	GATNNNNATC	1 cut(s)	660
BseBI	CCWGG	2 cut(s)	83, 612
BseDI	CCNNGG	2 cut(s)	214, 611
BseGI	GGATG	2 cut(s)	430, 621
BseJI	GATNNNNATC	1 cut(s)	660
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	2 cut(s)	492, 773
BseRI	GAGGAG	4 cut(s)	56, 346, 548, 551
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	2 cut(s)	163, 217
BsgI	GTGCAG	2 cut(s)	170, 591
BsiHKAI	GWGCWC	2 cut(s)	194, 279
BsiSI	CCGG	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	215
Bsp119I	TTCGAA	1 cut(s)	28
Bsp1286I	GDGCHC	3 cut(s)	194, 255, 279
Bsp143I	GATC	3 cut(s)	425, 576, 715
BspCNI	CTCAG	1 cut(s)	381
BspOI	GCTAGC	1 cut(s)	464
BspPI	GGATC	1 cut(s)	723
BspT104I	TTCGAA	1 cut(s)	28
BsrI	ACTGG	2 cut(s)	492, 773
BssECI	CCNNGG	2 cut(s)	214, 611
BssMI	GATC	3 cut(s)	425, 576, 715
BssT1I	CCWWGG	1 cut(s)	214
Bst2UI	CCWGG	2 cut(s)	83, 612
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	438
BstBI	TTCGAA	1 cut(s)	28
BstC8I	GCNNGC	4 cut(s)	106, 190, 210, 462
BstDEI	CTNAG	2 cut(s)	109, 389
BstF5I	GGATG	2 cut(s)	430, 621
BstHHI	GCGC	2 cut(s)	235, 653
BstKTI	GATC	3 cut(s)	428, 579, 718
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	3 cut(s)	425, 576, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 461
BstNI	CCWGG	2 cut(s)	83, 612
BstSCI	CCNGG	3 cut(s)	81, 253, 610
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	2 cut(s)	163, 217
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	365
BtsCI	GGATG	2 cut(s)	430, 621
Cac8I	GCNNGC	4 cut(s)	106, 190, 210, 462
CfoI	GCGC	2 cut(s)	235, 653
Cfr13I	GGNCC	1 cut(s)	174
CviJI	RGCY	5 cut(s)	108, 154, 208, 253, 388
CviKI_1	RGCY	5 cut(s)	108, 154, 208, 253, 388
DdeI	CTNAG	2 cut(s)	109, 389
DpnI	GATC	3 cut(s)	427, 578, 717
DpnII	GATC	3 cut(s)	425, 576, 715
DraIII	CACNNNGTG	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	255
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	174
EcoRII	CCWGG	2 cut(s)	81, 610
EcoRV	GATATC	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	152, 206
FokI	GGATG	2 cut(s)	417, 628
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	152, 206
FspBI	CTAG	1 cut(s)	461
FspI	TGCGCA	1 cut(s)	652
GlaI	GCGC	2 cut(s)	234, 652
GluI	GCNGC	2 cut(s)	152, 206
HapII	CCGG	1 cut(s)	255
HhaI	GCGC	2 cut(s)	235, 653
Hin6I	GCGC	2 cut(s)	233, 651
HinP1I	GCGC	2 cut(s)	233, 651
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	5 cut(s)	48, 340, 367, 431, 722
Hpy166II	GTNNAC	2 cut(s)	192, 411
Hpy188I	TCNGA	3 cut(s)	301, 324, 371
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	2 cut(s)	192, 411
HpyAV	CCTTC	5 cut(s)	5, 319, 344, 485, 679
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	7 cut(s)	151, 192, 227, 524, 587, 608, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 461
HpyF3I	CTNAG	2 cut(s)	109, 389
HspAI	GCGC	2 cut(s)	233, 651
Kzo9I	GATC	3 cut(s)	425, 576, 715
LmnI	GCTCC	3 cut(s)	185, 282, 600
LpnPI	CCDG	9 cut(s)	68, 90, 95, 159, 268, 473, 597, 624, 754
Lsp1109I	GCAGC	2 cut(s)	163, 217
LweI	GCATC	2 cut(s)	305, 606
MaeI	CTAG	1 cut(s)	461
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	3 cut(s)	427, 578, 717
MboI	GATC	3 cut(s)	425, 576, 715
MboII	GAAGA	3 cut(s)	455, 554, 646
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	3 cut(s)	194, 255, 279
MluCI	AATT	7 cut(s)	19, 51, 394, 582, 637, 669, 748
MseI	TTAA	3 cut(s)	18, 600, 672
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	3 cut(s)	83, 255, 612
MunI	CAATTG	1 cut(s)	582
MvaI	CCWGG	2 cut(s)	83, 612
MwoI	GCNNNNNNNGC	2 cut(s)	151, 461
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	3 cut(s)	425, 576, 715
NheI	GCTAGC	1 cut(s)	460
NmuCI	GTSAC	1 cut(s)	419
NsbI	TGCGCA	1 cut(s)	652
NspV	TTCGAA	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	153, 207
PpuMI	RGGWCCY	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	81, 610
PspGI	CCWGG	2 cut(s)	81, 610
PspPI	GGNCC	1 cut(s)	174
PspPPI	RGGWCCY	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	425
SaqAI	TTAA	3 cut(s)	18, 600, 672
SatI	GCNGC	2 cut(s)	152, 206
Sau3AI	GATC	3 cut(s)	425, 576, 715
Sau96I	GGNCC	1 cut(s)	174
ScrFI	CCNGG	3 cut(s)	83, 255, 612
SduI	GDGCHC	3 cut(s)	194, 255, 279
SetI	ASST	6 cut(s)	100, 179, 210, 330, 390, 690
SfaNI	GCATC	2 cut(s)	305, 606
SfuI	TTCGAA	1 cut(s)	28
SinI	GGWCC	1 cut(s)	174
Sse9I	AATT	7 cut(s)	19, 51, 394, 582, 637, 669, 748
SspMI	CTAG	1 cut(s)	461
StyD4I	CCNGG	3 cut(s)	81, 253, 610
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	377
TaqI	TCGA	4 cut(s)	6, 28, 241, 683
TaqII	GACCGA	1 cut(s)	711
TasI	AATT	7 cut(s)	19, 51, 394, 582, 637, 669, 748
Tru1I	TTAA	3 cut(s)	18, 600, 672
Tru9I	TTAA	3 cut(s)	18, 600, 672
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	2 cut(s)	151, 205
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	3 cut(s)	24, 50, 152
VneI	GTGCAC	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	2 cut(s)	51, 637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	740
XspI	CTAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.