Rmu_sc0002209.1_g000002

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002209.1
OG0013500
Physical Location & Seq
Forward (+)
8005 .. 9849
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002209.1_g000002.1.cds

Sequence Viewer

Length: 1845 bp
atgctcccaaagcagccctcactcacccacacaatctcaacaaccctaactcatcacaacctagttgtttcaagcttgtcttccccaacccgcccacaaaatccactccccttcatcctccaaaaatgcattgctctcctgcaaagctgtgcctcctccatttccaaactcaaacaaatccacgccttctctttacgacatggcgtccctctctccaacccagatatgggcaaacacctcatcttcaccgcagtgtcactctcatccccaatgtcctatgcccaccaagtattctcccaaatccaatggcccaatgtgttcacatggaacaccatgattagaggctacgccgagagccaaaacccaatgcctgtgattcaactctaccaccaaatgcgtgtgaattctgtcgaacccgatacgcatacatacccttttctcttgaaggctgtggctaagttgttgaatgtgagagagggggagaagatacattccgttgctctgagaaatgggctggagtcgttggtctttgttaagaacgctttgcttcacatgtacgccgtttgtgggcaggtggagagtgcatacgaggtgtttgaatcaatgtctgagagagaccttgtggcttggaactctgtgattaatgggttttccttgaatggaaggcctaatgaggctctgactatatttagggagatgagtttggagggtgttgagccggatgggttcaccatggttagcttgctgtgtgcttgtgccgagcttggggctttggctttgggtgggagggttcatgtgtatatgttgaaggtgagttggacaaggaattctcatgctagtaatgcgcttctggatgtttatgcaaagtgtggaagcataagggaggcgcagaaggtgtttgaagaaatggaggagaggagtgtggtttcgtggactgctttggttgttgggttggctgttaatgggtttggtaaggaagcattggagctttttaaagagtttaaaagagagggattggtgccgactgagataacttttgttggggttctgtatgcctgtagtcattgcgggatggttgatgaagggtttgagtactttagagtgatgaaagaggagtatcggattgtgcccagaatagaacattatggttgcatggttgatttgttagctagagcaggcttggtgaaagaagcgtatgaatacattaaggacatgcctgttcaccccaatgctgttatttggaggaccttattaggagcatgcaccatacatgggcaatcggctctaggggagattgcaagaggccacatcctgcagttagaacctagacatagtggggattatgtgctgatctccaatctctacgcatctgagcgtcgatggtcggatgtgcaaaaggtgaggaggacaatgcttagtgaaggtgtgaagaaaactccgggctatagtattgttgagttaaggaacagagttttcgagtttactatgggtgacagatctcatccacaaagtgatgagatatatgcaaagctggtagagattacaaaattactgaaacagaaaggttatgtgcctcatacggagaatgttcttgcagacatagaggaggaagaaaaagaaaatgctttgtcctatcacagtgaaaaaattgcaattgcattcatgctcctagttaccgcaccaggcataccaattaggatttggaagaatttgagagtttgtgcagattgtcatcttgcatttaagctcatctcaaaggtttatgatcgggagattgttgtgagggatcgtagccgatttcaccattttagagatggttcttgttcttgtagtgattactggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 X8

Protein Analysis

614

Amino Acids

69.41

Weight (kDa)

7.34

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21065 AT4G21065
fragaria_vesca FvH4_3g09500
malus_domestica MD05G1277300.v1.1 MD10G1256200.v1.1
prunus_persica Prupe.4G087400_v2.0.a1
pyrus_communis pycom05g25840 pycom10g21200
rosa_chinensis RchiOBHm_Chr5g0015081
rosa_laevigata RLG00000032168
rosa_multiflora Rmu_co8160296.1_g000001 Rmu_sc0002209.1_g000002 Rmu_sc0009777.1_g000014 Rmu_sc0036572.1_g000001
rosa_roxburghii Rroxscaffold_1G00061450
rosa_rugosa Rorug05G0024200
rosa_samantha Rh5CG127500
rosa_wichuraiana Rw5G010250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 562
Acc36I ACCTGC 1 cut(s) 562
AccB1I GGYRCC 1 cut(s) 1018
AciI CCGC 4 cut(s) 91, 249, 1068, 1677
AclWI GGATC 1 cut(s) 1794
AcsI RAATTY 3 cut(s) 403, 826, 1708
AcyI GRCGYC 1 cut(s) 204
AdeI CACNNNGTG 1 cut(s) 1511
AfaI GTAC 2 cut(s) 557, 1094
AfiI CCNNNNNNNGG 5 cut(s) 226, 227, 567, 765, 1272
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 8 cut(s) 72, 380, 445, 466, 599, 658, 808, 902
AhdI GACNNNNNGTC 1 cut(s) 203
AjnI CCWGG 1 cut(s) 1681
AleI CACNNNNGTG 1 cut(s) 251
AluBI AGCT 8 cut(s) 75, 147, 741, 763, 988, 1169, 1531, 1747
AluI AGCT 8 cut(s) 75, 147, 741, 763, 988, 1169, 1531, 1747
Alw26I GTCTC 1 cut(s) 609
AlwI GGATC 1 cut(s) 1794
AoxI GGCC 3 cut(s) 308, 665, 1303
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 3 cut(s) 403, 826, 1708
AseI ATTAAT 1 cut(s) 642
AspLEI GCGC 2 cut(s) 847, 889
AspS9I GGNCC 2 cut(s) 309, 1245
AsuC2I CCSGG 1 cut(s) 1440
AsuHPI GGTGA 9 cut(s) 16, 238, 721, 823, 1195, 1214, 1411, 1502, 1793
AvaII GGWCC 1 cut(s) 1245
BaeGI GKGCMC 1 cut(s) 1131
BanI GGYRCC 1 cut(s) 1018
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 25
BccI CCATC 4 cut(s) 716, 1066, 1374, 1808
BceAI ACGGC 1 cut(s) 545
BciT130I CCWGG 1 cut(s) 1683
BcnI CCSGG 1 cut(s) 1440
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 6 cut(s) 62, 837, 1170, 1286, 1326, 1670
BfmI CTRYAG 3 cut(s) 1057, 1313, 1444
BfuAI ACCTGC 1 cut(s) 562
BglII AGATCT 1 cut(s) 1496
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmcAI AGTACT 1 cut(s) 1094
Bme1390I CCNGG 2 cut(s) 1440, 1683
Bme18I GGWCC 1 cut(s) 1245
BmeRI GACNNNNNGTC 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 309, 1245
BmiI GGNNCC 1 cut(s) 1020
BmrFI CCNGG 2 cut(s) 1440, 1683
BmsI GCATC 1 cut(s) 1376
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 536
BpuMI CCSGG 1 cut(s) 1440
BsaBI GATNNNNATC 1 cut(s) 1731
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 609
BsaJI CCNNGG 1 cut(s) 732
Bsc4I CCNNNNNNNGG 5 cut(s) 226, 227, 567, 765, 1272
Bse1I ACTGG 1 cut(s) 1844
Bse3DI GCAATG 2 cut(s) 129, 1063
Bse8I GATNNNNATC 1 cut(s) 1731
BseBI CCWGG 1 cut(s) 1683
BseDI CCNNGG 1 cut(s) 732
BseGI GGATG 8 cut(s) 114, 263, 727, 859, 1077, 1308, 1393, 1501
BseJI GATNNNNATC 1 cut(s) 1731
BseLI CCNNNNNNNGG 5 cut(s) 226, 227, 567, 765, 1272
BseMI GCAATG 2 cut(s) 129, 1063
BseMII CTCAG 4 cut(s) 494, 600, 1017, 1362
BseNI ACTGG 1 cut(s) 1844
BseRI GAGGAG 6 cut(s) 145, 926, 931, 1127, 1417, 1619
BseSI GKGCMC 1 cut(s) 1131
BseXI GCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 1743
BshFI GGCC 3 cut(s) 310, 667, 1305
BshNI GGYRCC 1 cut(s) 1018
BsiSI CCGG 2 cut(s) 719, 1439
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 5 cut(s) 226, 227, 567, 765, 1272
BsmAI GTCTC 1 cut(s) 609
BsmFI GGGAC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 1658
BsnI GGCC 3 cut(s) 310, 667, 1305
Bso31I GGTCTC 1 cut(s) 609
Bsp1286I GDGCHC 1 cut(s) 1131
Bsp143I GATC 4 cut(s) 1350, 1496, 1765, 1786
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 4 cut(s) 91, 249, 1068, 1677
BspANI GGCC 3 cut(s) 310, 667, 1305
BspCNI CTCAG 4 cut(s) 495, 601, 1018, 1363
BspLI GGNNCC 1 cut(s) 1020
BspMAI CTGCAG 1 cut(s) 1317
BspMI ACCTGC 1 cut(s) 562
BspPI GGATC 1 cut(s) 1794
BspT107I GGYRCC 1 cut(s) 1018
BspTNI GGTCTC 1 cut(s) 609
BsrDI GCAATG 2 cut(s) 129, 1063
BsrI ACTGG 1 cut(s) 1844
BssECI CCNNGG 1 cut(s) 732
BssMI GATC 4 cut(s) 1350, 1496, 1765, 1786
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 732
Bst2UI CCWGG 1 cut(s) 1683
Bst4CI ACNGT 1 cut(s) 1640
BstACI GRCGYC 1 cut(s) 204
BstC8I GCNNGC 3 cut(s) 743, 1177, 1261
BstDEI CTNAG 6 cut(s) 456, 503, 609, 1026, 1371, 1415
BstDSI CCRYGG 1 cut(s) 732
BstF5I GGATG 8 cut(s) 114, 263, 727, 859, 1077, 1308, 1393, 1501
BstHHI GCGC 2 cut(s) 847, 889
BstKTI GATC 4 cut(s) 1353, 1499, 1768, 1789
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 4 cut(s) 1350, 1496, 1765, 1786
BstMWI GCNNNNNNNGC 2 cut(s) 10, 842
BstNI CCWGG 1 cut(s) 1683
BstNSI RCATGY 3 cut(s) 556, 1216, 1263
BstSCI CCNGG 2 cut(s) 1438, 1681
BstSFI CTRYAG 3 cut(s) 1057, 1313, 1444
BstSLI GKGCMC 1 cut(s) 1131
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 1496
BstYI RGATCY 1 cut(s) 1496
BsuRI GGCC 3 cut(s) 310, 667, 1305
BtgI CCRYGG 1 cut(s) 732
BtsCI GGATG 8 cut(s) 114, 263, 727, 859, 1077, 1308, 1393, 1501
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 2 cut(s) 258, 1645
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 3 cut(s) 743, 1177, 1261
CfoI GCGC 2 cut(s) 847, 889
Cfr13I GGNCC 2 cut(s) 309, 1245
CseI GACGC 2 cut(s) 193, 1364
Csp6I GTAC 2 cut(s) 556, 1093
CviQI GTAC 2 cut(s) 556, 1093
DdeI CTNAG 6 cut(s) 456, 503, 609, 1026, 1371, 1415
DpnI GATC 4 cut(s) 1352, 1498, 1767, 1788
DpnII GATC 4 cut(s) 1350, 1496, 1765, 1786
DraI TTTAAA 2 cut(s) 994, 1003
DraIII CACNNNGTG 1 cut(s) 1511
DriI GACNNNNNGTC 1 cut(s) 203
Eam1105I GACNNNNNGTC 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 732
Eco147I AGGCCT 1 cut(s) 667
Eco31I GGTCTC 1 cut(s) 609
Eco47I GGWCC 1 cut(s) 1245
EcoO109I RGGNCCY 1 cut(s) 1245
EcoRI GAATTC 2 cut(s) 403, 826
EcoRII CCWGG 1 cut(s) 1681
EcoT14I CCWWGG 1 cut(s) 732
EcoT22I ATGCAT 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 732
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FaqI GGGAC 1 cut(s) 191
FauI CCCGC 2 cut(s) 98, 1061
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 8 cut(s) 101, 250, 734, 866, 1084, 1295, 1400, 1488
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 6 cut(s) 62, 837, 1170, 1286, 1326, 1670
GlaI GCGC 2 cut(s) 846, 888
GluI GCNGC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 536
HaeIII GGCC 3 cut(s) 310, 667, 1305
HapII CCGG 2 cut(s) 719, 1439
HgaI GACGC 2 cut(s) 193, 1364
HhaI GCGC 2 cut(s) 847, 889
Hin1I GRCGYC 1 cut(s) 204
Hin6I GCGC 2 cut(s) 845, 887
HinP1I GCGC 2 cut(s) 845, 887
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 3 cut(s) 376, 518, 599
HpaII CCGG 2 cut(s) 719, 1439
HphI GGTGA 9 cut(s) 16, 238, 721, 823, 1195, 1214, 1411, 1502, 1793
Hpy166II GTNNAC 5 cut(s) 321, 729, 933, 1222, 1482
Hpy188I TCNGA 6 cut(s) 504, 610, 681, 1122, 1372, 1387
Hpy188III TCNNGA 3 cut(s) 442, 851, 1769
Hpy8I GTNNAC 5 cut(s) 321, 729, 933, 1222, 1482
Hpy99I CGWCG 1 cut(s) 1380
HpyAV CCTTC 8 cut(s) 121, 196, 439, 657, 802, 886, 1076, 1415
HpyCH4III ACNGT 1 cut(s) 1640
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 842
HpyF3I CTNAG 6 cut(s) 456, 503, 609, 1026, 1371, 1415
Hsp92I GRCGYC 1 cut(s) 204
HspAI GCGC 2 cut(s) 845, 887
Kzo9I GATC 4 cut(s) 1350, 1496, 1765, 1786
LmnI GCTCC 4 cut(s) 9, 985, 1256, 1671
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 1376
MaeI CTAG 6 cut(s) 62, 837, 1170, 1286, 1326, 1670
MaeIII GTNAC 3 cut(s) 255, 1490, 1672
MalI GATC 4 cut(s) 1352, 1498, 1767, 1788
MboI GATC 4 cut(s) 1350, 1496, 1765, 1786
MboII GAAGA 7 cut(s) 72, 235, 496, 914, 1441, 1622, 1717
MfeI CAATTG 1 cut(s) 1653
MflI RGATCY 1 cut(s) 1496
MhlI GDGCHC 1 cut(s) 1131
MluCI AATT 7 cut(s) 403, 826, 1547, 1647, 1653, 1692, 1708
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 3 cut(s) 240, 797, 1365
Mph1103I ATGCAT 1 cut(s) 131
MseI TTAA 8 cut(s) 534, 642, 960, 993, 1002, 1206, 1460, 1743
MslI CAYNNNNRTG 2 cut(s) 251, 1227
MspI CCGG 2 cut(s) 719, 1439
MspR9I CCNGG 2 cut(s) 1440, 1683
MunI CAATTG 1 cut(s) 1653
Mva1269I GAATGC 1 cut(s) 1658
MvaI CCWGG 1 cut(s) 1683
MwoI GCNNNNNNNGC 2 cut(s) 10, 842
NciI CCSGG 1 cut(s) 1440
NcoI CCATGG 1 cut(s) 732
NdeII GATC 4 cut(s) 1350, 1496, 1765, 1786
NlaIV GGNNCC 1 cut(s) 1020
NmeAIII GCCGAG 2 cut(s) 376, 784
NmuCI GTSAC 2 cut(s) 255, 1490
NsiI ATGCAT 1 cut(s) 131
NspI RCATGY 3 cut(s) 556, 1216, 1263
OliI CACNNNNGTG 1 cut(s) 251
PaeI GCATGC 1 cut(s) 1263
PaqCI CACCTGC 1 cut(s) 562
PceI AGGCCT 1 cut(s) 667
PciI ACATGT 1 cut(s) 552
PctI GAATGC 1 cut(s) 1658
PfeI GAWTC 2 cut(s) 376, 599
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
PpuMI RGGWCCY 1 cut(s) 1245
PscI ACATGT 1 cut(s) 552
PshBI ATTAAT 1 cut(s) 642
Psp5II RGGWCCY 1 cut(s) 1245
Psp6I CCWGG 1 cut(s) 1681
PspGI CCWGG 1 cut(s) 1681
PspN4I GGNNCC 1 cut(s) 1020
PspPI GGNCC 2 cut(s) 309, 1245
PspPPI RGGWCCY 1 cut(s) 1245
PstI CTGCAG 1 cut(s) 1317
PsuI RGATCY 1 cut(s) 1496
RsaI GTAC 2 cut(s) 557, 1094
RsaNI GTAC 2 cut(s) 556, 1093
RseI CAYNNNNRTG 2 cut(s) 251, 1227
SaqAI TTAA 8 cut(s) 534, 642, 960, 993, 1002, 1206, 1460, 1743
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 4 cut(s) 1350, 1496, 1765, 1786
Sau96I GGNCC 2 cut(s) 309, 1245
ScaI AGTACT 1 cut(s) 1094
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 2 cut(s) 1440, 1683
SduI GDGCHC 1 cut(s) 1131
SfaNI GCATC 1 cut(s) 1376
SfcI CTRYAG 3 cut(s) 1057, 1313, 1444
SinI GGWCC 1 cut(s) 1245
SmiMI CAYNNNNRTG 2 cut(s) 251, 1227
SphI GCATGC 1 cut(s) 1263
Sse9I AATT 7 cut(s) 403, 826, 1547, 1647, 1653, 1692, 1708
SseBI AGGCCT 1 cut(s) 667
SsiI CCGC 4 cut(s) 91, 249, 1068, 1677
SspMI CTAG 6 cut(s) 62, 837, 1170, 1286, 1326, 1670
StuI AGGCCT 1 cut(s) 667
StyD4I CCNGG 2 cut(s) 1438, 1681
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 1 cut(s) 1640
TaqI TCGA 3 cut(s) 411, 1378, 1476
TasI AATT 7 cut(s) 403, 826, 1547, 1647, 1653, 1692, 1708
TatI WGTACW 1 cut(s) 1092
TfiI GAWTC 2 cut(s) 376, 599
Tru1I TTAA 8 cut(s) 534, 642, 960, 993, 1002, 1206, 1460, 1743
Tru9I TTAA 8 cut(s) 534, 642, 960, 993, 1002, 1206, 1460, 1743
TscAI CASTG 2 cut(s) 258, 1645
TseFI GTSAC 2 cut(s) 255, 1490
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 2 cut(s) 255, 1490
TspDTI ATGAA 6 cut(s) 103, 782, 1095, 1121, 1212, 1651
TspGWI ACGGA 2 cut(s) 484, 1595
TspRI CASTG 2 cut(s) 258, 1645
VpaK11BI GGWCC 1 cut(s) 1245
VspI ATTAAT 1 cut(s) 642
XapI RAATTY 3 cut(s) 403, 826, 1708
XceI RCATGY 3 cut(s) 556, 1216, 1263
XcmI CCANNNNNNNNNTGG 3 cut(s) 223, 1698, 1811
XspI CTAG 6 cut(s) 62, 837, 1170, 1286, 1326, 1670
ZrmI AGTACT 1 cut(s) 1094
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.