Encoded by
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G79090 AT1G79090 AT1G79090 |
| fragaria_vesca | FvH4_3g15840 FvH4_3g15840 |
| malus_domestica | MD05G1219500.v1.1 MD10G1201900.v1.1 |
| prunus_persica | Prupe.4G140400_v2.0.a1 |
| pyrus_communis | pycom05g20090 pycom10g17270 |
| rosa_chinensis | RchiOBHm_Chr5g0026641 |
| rosa_laevigata | RLG00000032942 |
| rosa_multiflora | Rmu_sc0004490.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00052830 |
| rosa_rugosa | Rorug05G0094500 |
| rosa_samantha | Rh5AG188000 Rh5BG184400 Rh5CG204300 Rh5DG186700 |
| rosa_wichuraiana | Rw5G017020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 50, 1839 |
| Acc65I | GGTACC | 1 cut(s) | 1910 |
| AccB1I | GGYRCC | 2 cut(s) | 577, 1910 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 587 |
| AccI | GTMKAC | 1 cut(s) | 1240 |
| AciI | CCGC | 9 cut(s) | 95, 539, 643, 804, 1049, 1678, 2048, 2070, 2404 |
| AclWI | GGATC | 6 cut(s) | 324, 337, 766, 1085, 1380, 2129 |
| AcoI | YGGCCR | 3 cut(s) | 1193, 1741, 1878 |
| AcsI | RAATTY | 5 cut(s) | 775, 1495, 1941, 2198, 2461 |
| AcuI | CTGAAG | 1 cut(s) | 401 |
| AdeI | CACNNNGTG | 1 cut(s) | 2006 |
| AfaI | GTAC | 4 cut(s) | 488, 1829, 1912, 2452 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 587, 611, 614, 689, 1285, 1609, 1809, 1960, 2291 |
| AflII | CTTAAG | 1 cut(s) | 1366 |
| AjiI | CACGTC | 1 cut(s) | 464 |
| AjnI | CCWGG | 5 cut(s) | 610, 684, 1419, 1507, 1846 |
| Alw21I | GWGCWC | 4 cut(s) | 1390, 1860, 2002, 2373 |
| Alw26I | GTCTC | 2 cut(s) | 1020, 2371 |
| Alw44I | GTGCAC | 1 cut(s) | 1998 |
| AlwI | GGATC | 6 cut(s) | 324, 337, 766, 1085, 1380, 2129 |
| Ama87I | CYCGRG | 2 cut(s) | 1095, 1383 |
| ApaLI | GTGCAC | 1 cut(s) | 1998 |
| ApoI | RAATTY | 5 cut(s) | 775, 1495, 1941, 2198, 2461 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 414, 496, 570 |
| Asp718I | GGTACC | 1 cut(s) | 1910 |
| AspLEI | GCGC | 1 cut(s) | 848 |
| AspS9I | GGNCC | 8 cut(s) | 680, 831, 1206, 1754, 1807, 1990, 2082, 2269 |
| AsuHPI | GGTGA | 4 cut(s) | 239, 693, 1100, 1865 |
| AsuNHI | GCTAGC | 1 cut(s) | 1255 |
| AvaI | CYCGRG | 2 cut(s) | 1095, 1383 |
| AvaII | GGWCC | 3 cut(s) | 680, 1206, 1990 |
| AxyI | CCTNAGG | 3 cut(s) | 85, 1764, 1784 |
| BaeGI | GKGCMC | 3 cut(s) | 364, 2002, 2176 |
| BalI | TGGCCA | 3 cut(s) | 1195, 1743, 1880 |
| BamHI | GGATCC | 1 cut(s) | 329 |
| BanI | GGYRCC | 2 cut(s) | 577, 1910 |
| BanII | GRGCYC | 2 cut(s) | 513, 1860 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1903, 1935 |
| BauI | CACGAG | 1 cut(s) | 1389 |
| BbsI | GAAGAC | 2 cut(s) | 429, 1589 |
| Bbv12I | GWGCWC | 4 cut(s) | 1390, 1860, 2002, 2373 |
| BbvCI | CCTCAGC | 1 cut(s) | 783 |
| BceAI | ACGGC | 1 cut(s) | 2273 |
| BciT130I | CCWGG | 5 cut(s) | 612, 686, 1421, 1509, 1848 |
| BcoDI | GTCTC | 2 cut(s) | 1020, 2371 |
| BfaI | CTAG | 7 cut(s) | 963, 1256, 1503, 1544, 1569, 1604, 1820 |
| BfmI | CTRYAG | 3 cut(s) | 1631, 1832, 1935 |
| BfrI | CTTAAG | 1 cut(s) | 1366 |
| BfuAI | ACCTGC | 2 cut(s) | 50, 1839 |
| BglII | AGATCT | 1 cut(s) | 58 |
| Bme1390I | CCNGG | 5 cut(s) | 612, 686, 1421, 1509, 1848 |
| Bme18I | GGWCC | 3 cut(s) | 680, 1206, 1990 |
| BmeT110I | CYCGRG | 2 cut(s) | 1095, 1383 |
| BmgBI | CACGTC | 1 cut(s) | 464 |
| BmgT120I | GGNCC | 8 cut(s) | 680, 831, 1206, 1754, 1807, 1990, 2082, 2269 |
| BmrFI | CCNGG | 5 cut(s) | 612, 686, 1421, 1509, 1848 |
| BmrI | ACTGGG | 1 cut(s) | 858 |
| BmtI | GCTAGC | 1 cut(s) | 1259 |
| BmuI | ACTGGG | 1 cut(s) | 858 |
| BpiI | GAAGAC | 2 cut(s) | 429, 1589 |
| BpmI | CTGGAG | 3 cut(s) | 165, 330, 1403 |
| Bpu10I | CCTNAGC | 2 cut(s) | 507, 783 |
| BpuEI | CTTGAG | 2 cut(s) | 39, 2129 |
| BsaJI | CCNNGG | 6 cut(s) | 610, 684, 685, 1803, 1993, 2059 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 81, 111, 1171, 1201 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 587, 611, 614, 689, 1285, 1609, 1809, 1960, 2291 |
| Bse1I | ACTGG | 9 cut(s) | 182, 386, 561, 748, 864, 977, 997, 1303, 2330 |
| Bse21I | CCTNAGG | 3 cut(s) | 85, 1764, 1784 |
| Bse3DI | GCAATG | 3 cut(s) | 833, 1080, 1279 |
| BseBI | CCWGG | 5 cut(s) | 612, 686, 1421, 1509, 1848 |
| BseDI | CCNNGG | 6 cut(s) | 610, 684, 685, 1803, 1993, 2059 |
| BseGI | GGATG | 9 cut(s) | 409, 427, 859, 973, 1043, 1294, 1591, 1618, 1774 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 587, 611, 614, 689, 1285, 1609, 1809, 1960, 2291 |
| BseMI | GCAATG | 3 cut(s) | 833, 1080, 1279 |
| BseNI | ACTGG | 9 cut(s) | 182, 386, 561, 748, 864, 977, 997, 1303, 2330 |
| BseRI | GAGGAG | 4 cut(s) | 188, 212, 215, 1371 |
| BseSI | GKGCMC | 3 cut(s) | 364, 2002, 2176 |
| BseYI | CCCAGC | 1 cut(s) | 1328 |
| BsgI | GTGCAG | 3 cut(s) | 444, 953, 2316 |
| BshNI | GGYRCC | 2 cut(s) | 577, 1910 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1390, 1860, 2002, 2373 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1095, 1383 |
| BsiSI | CCGG | 1 cut(s) | 1810 |
| BslFI | GGGAC | 3 cut(s) | 35, 450, 1745 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 587, 611, 614, 689, 1285, 1609, 1809, 1960, 2291 |
| BsmAI | GTCTC | 2 cut(s) | 1020, 2371 |
| BsmFI | GGGAC | 3 cut(s) | 35, 450, 1745 |
| BsmI | GAATGC | 1 cut(s) | 1254 |
| BsoBI | CYCGRG | 2 cut(s) | 1095, 1383 |
| Bsp1286I | GDGCHC | 7 cut(s) | 364, 513, 1390, 1860, 2002, 2176, 2373 |
| Bsp1407I | TGTACA | 1 cut(s) | 486 |
| BspACI | CCGC | 9 cut(s) | 95, 539, 643, 804, 1049, 1678, 2048, 2070, 2404 |
| BspMAI | CTGCAG | 2 cut(s) | 1836, 1939 |
| BspMI | ACCTGC | 2 cut(s) | 50, 1839 |
| BspOI | GCTAGC | 1 cut(s) | 1259 |
| BspPI | GGATC | 6 cut(s) | 324, 337, 766, 1085, 1380, 2129 |
| BspT107I | GGYRCC | 2 cut(s) | 577, 1910 |
| BspTI | CTTAAG | 1 cut(s) | 1366 |
| BsrDI | GCAATG | 3 cut(s) | 833, 1080, 1279 |
| BsrGI | TGTACA | 1 cut(s) | 486 |
| BsrI | ACTGG | 9 cut(s) | 182, 386, 561, 748, 864, 977, 997, 1303, 2330 |
| BssECI | CCNNGG | 6 cut(s) | 610, 684, 685, 1803, 1993, 2059 |
| BssNAI | GTATAC | 1 cut(s) | 1241 |
| BssSI | CACGAG | 1 cut(s) | 1389 |
| BssT1I | CCWWGG | 3 cut(s) | 1803, 1993, 2059 |
| Bst1107I | GTATAC | 1 cut(s) | 1241 |
| Bst2BI | CACGAG | 1 cut(s) | 1389 |
| Bst2UI | CCWGG | 5 cut(s) | 612, 686, 1421, 1509, 1848 |
| Bst4CI | ACNGT | 6 cut(s) | 447, 894, 1635, 1665, 1750, 2432 |
| Bst6I | CTCTTC | 5 cut(s) | 165, 1456, 1479, 1716, 1803 |
| BstAFI | CTTAAG | 1 cut(s) | 1366 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2006 |
| BstAUI | TGTACA | 1 cut(s) | 486 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 609 |
| BstF5I | GGATG | 9 cut(s) | 409, 427, 859, 973, 1043, 1294, 1591, 1618, 1774 |
| BstHHI | GCGC | 1 cut(s) | 848 |
| BstMAI | GTCTC | 2 cut(s) | 1020, 2371 |
| BstNI | CCWGG | 5 cut(s) | 612, 686, 1421, 1509, 1848 |
| BstNSI | RCATGY | 1 cut(s) | 1412 |
| BstSCI | CCNGG | 5 cut(s) | 610, 684, 1419, 1507, 1846 |
| BstSFI | CTRYAG | 3 cut(s) | 1631, 1832, 1935 |
| BstSLI | GKGCMC | 3 cut(s) | 364, 2002, 2176 |
| BstV2I | GAAGAC | 2 cut(s) | 429, 1589 |
| BstX2I | RGATCY | 3 cut(s) | 58, 329, 1372 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1655, 1751 |
| BstYI | RGATCY | 3 cut(s) | 58, 329, 1372 |
| BstZ17I | GTATAC | 1 cut(s) | 1241 |
| Bsu36I | CCTNAGG | 3 cut(s) | 85, 1764, 1784 |
| BtrI | CACGTC | 1 cut(s) | 464 |
| BtsCI | GGATG | 9 cut(s) | 409, 427, 859, 973, 1043, 1294, 1591, 1618, 1774 |
| BtsI | GCAGTG | 1 cut(s) | 2028 |
| BtsIMutI | CAGTG | 5 cut(s) | 568, 1011, 1515, 2028, 2361 |
| BveI | ACCTGC | 2 cut(s) | 50, 1839 |
| CfoI | GCGC | 1 cut(s) | 848 |
| Cfr13I | GGNCC | 8 cut(s) | 680, 831, 1206, 1754, 1807, 1990, 2082, 2269 |
| Csp6I | GTAC | 4 cut(s) | 487, 1828, 1911, 2451 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 823, 858, 1289, 1324 |
| CviAII | CATG | 6 cut(s) | 755, 1409, 1861, 1974, 2141, 2458 |
| CviQI | GTAC | 4 cut(s) | 487, 1828, 1911, 2451 |
| DraI | TTTAAA | 1 cut(s) | 873 |
| DraIII | CACNNNGTG | 1 cut(s) | 2006 |
| EaeI | YGGCCR | 3 cut(s) | 1193, 1741, 1878 |
| Eam1104I | CTCTTC | 5 cut(s) | 165, 1456, 1479, 1716, 1803 |
| EarI | CTCTTC | 5 cut(s) | 165, 1456, 1479, 1716, 1803 |
| Ecl136II | GAGCTC | 1 cut(s) | 1858 |
| Eco130I | CCWWGG | 3 cut(s) | 1803, 1993, 2059 |
| Eco147I | AGGCCT | 3 cut(s) | 1465, 1685, 2186 |
| Eco24I | GRGCYC | 2 cut(s) | 513, 1860 |
| Eco47I | GGWCC | 3 cut(s) | 680, 1206, 1990 |
| Eco53kI | GAGCTC | 1 cut(s) | 1858 |
| Eco57I | CTGAAG | 1 cut(s) | 401 |
| Eco81I | CCTNAGG | 3 cut(s) | 85, 1764, 1784 |
| Eco88I | CYCGRG | 2 cut(s) | 1095, 1383 |
| EcoICRI | GAGCTC | 1 cut(s) | 1858 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 609 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2082, 2269 |
| EcoRI | GAATTC | 2 cut(s) | 2198, 2461 |
| EcoRII | CCWGG | 5 cut(s) | 610, 684, 1419, 1507, 1846 |
| EcoT14I | CCWWGG | 3 cut(s) | 1803, 1993, 2059 |
| EcoT22I | ATGCAT | 3 cut(s) | 109, 121, 936 |
| EcoT38I | GRGCYC | 2 cut(s) | 513, 1860 |
| ErhI | CCWWGG | 3 cut(s) | 1803, 1993, 2059 |
| FaeI | CATG | 6 cut(s) | 758, 1412, 1864, 1977, 2144, 2461 |
| FaqI | GGGAC | 3 cut(s) | 35, 450, 1745 |
| FatI | CATG | 6 cut(s) | 754, 1408, 1860, 1973, 2140, 2457 |
| FauI | CCCGC | 3 cut(s) | 1056, 2055, 2077 |
| FauNDI | CATATG | 2 cut(s) | 850, 1282 |
| FblI | GTMKAC | 1 cut(s) | 1240 |
| FokI | GGATG | 9 cut(s) | 416, 434, 846, 960, 1030, 1301, 1598, 1625, 1781 |
| FriOI | GRGCYC | 2 cut(s) | 513, 1860 |
| FspBI | CTAG | 7 cut(s) | 963, 1256, 1503, 1544, 1569, 1604, 1820 |
| GlaI | GCGC | 1 cut(s) | 847 |
| GsaI | CCCAGC | 1 cut(s) | 1332 |
| GsuI | CTGGAG | 3 cut(s) | 165, 330, 1403 |
| HapII | CCGG | 1 cut(s) | 1810 |
| HhaI | GCGC | 1 cut(s) | 848 |
| Hin1II | CATG | 6 cut(s) | 758, 1412, 1864, 1977, 2144, 2461 |
| Hin6I | GCGC | 1 cut(s) | 846 |
| HinP1I | GCGC | 1 cut(s) | 846 |
| HincII | GTYRAC | 1 cut(s) | 1723 |
| HindII | GTYRAC | 1 cut(s) | 1723 |
| HinfI | GANTC | 4 cut(s) | 134, 473, 1925, 2468 |
| HpaII | CCGG | 1 cut(s) | 1810 |
| HphI | GGTGA | 4 cut(s) | 239, 693, 1100, 1865 |
| Hpy166II | GTNNAC | 5 cut(s) | 566, 680, 1241, 1723, 2000 |
| Hpy8I | GTNNAC | 5 cut(s) | 566, 680, 1241, 1723, 2000 |
| HpyAV | CCTTC | 6 cut(s) | 425, 1456, 1688, 1929, 2219, 2363 |
| HpyCH4III | ACNGT | 6 cut(s) | 447, 894, 1635, 1665, 1750, 2432 |
| HpyCH4IV | ACGT | 3 cut(s) | 231, 463, 2160 |
| HpySE526I | ACGT | 3 cut(s) | 231, 463, 2160 |
| Hsp92II | CATG | 6 cut(s) | 758, 1412, 1864, 1977, 2144, 2461 |
| HspAI | GCGC | 1 cut(s) | 846 |
| KpnI | GGTACC | 1 cut(s) | 1914 |
| LmnI | GCTCC | 5 cut(s) | 50, 184, 1552, 1821, 2420 |
| MaeI | CTAG | 7 cut(s) | 963, 1256, 1503, 1544, 1569, 1604, 1820 |
| MaeII | ACGT | 3 cut(s) | 231, 463, 2160 |
| MaeIII | GTNAC | 4 cut(s) | 227, 1573, 2161, 2253 |
| MfeI | CAATTG | 4 cut(s) | 68, 926, 1578, 1715 |
| MflI | RGATCY | 3 cut(s) | 58, 329, 1372 |
| MhlI | GDGCHC | 7 cut(s) | 364, 513, 1390, 1860, 2002, 2176, 2373 |
| MlsI | TGGCCA | 3 cut(s) | 1195, 1743, 1880 |
| MluNI | TGGCCA | 3 cut(s) | 1195, 1743, 1880 |
| MlyI | GAGTC | 1 cut(s) | 2477 |
| MmeI | TCCRAC | 2 cut(s) | 1671, 2370 |
| Mox20I | TGGCCA | 3 cut(s) | 1195, 1743, 1880 |
| Mph1103I | ATGCAT | 3 cut(s) | 109, 121, 936 |
| MroXI | GAANNNNTTC | 3 cut(s) | 414, 496, 570 |
| MscI | TGGCCA | 3 cut(s) | 1195, 1743, 1880 |
| MseI | TTAA | 8 cut(s) | 78, 263, 278, 872, 993, 1026, 1367, 2129 |
| MslI | CAYNNNNRTG | 5 cut(s) | 768, 906, 1179, 1272, 2364 |
| Msp20I | TGGCCA | 3 cut(s) | 1195, 1743, 1880 |
| MspA1I | CMGCKG | 2 cut(s) | 1223, 2404 |
| MspCI | CTTAAG | 1 cut(s) | 1366 |
| MspI | CCGG | 1 cut(s) | 1810 |
| MspR9I | CCNGG | 5 cut(s) | 612, 686, 1421, 1509, 1848 |
| MunI | CAATTG | 4 cut(s) | 68, 926, 1578, 1715 |
| Mva1269I | GAATGC | 1 cut(s) | 1254 |
| MvaI | CCWGG | 5 cut(s) | 612, 686, 1421, 1509, 1848 |
| NdeI | CATATG | 2 cut(s) | 850, 1282 |
| NheI | GCTAGC | 1 cut(s) | 1255 |
| NlaIII | CATG | 6 cut(s) | 758, 1412, 1864, 1977, 2144, 2461 |
| NmuCI | GTSAC | 3 cut(s) | 227, 2161, 2253 |
| NsiI | ATGCAT | 3 cut(s) | 109, 121, 936 |
| NspI | RCATGY | 1 cut(s) | 1412 |
| PaeR7I | CTCGAG | 2 cut(s) | 1095, 1383 |
| PasI | CCCWGGG | 1 cut(s) | 685 |
| PceI | AGGCCT | 3 cut(s) | 1465, 1685, 2186 |
| PctI | GAATGC | 1 cut(s) | 1254 |
| PdmI | GAANNNNTTC | 3 cut(s) | 414, 496, 570 |
| PfeI | GAWTC | 3 cut(s) | 134, 473, 1925 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 587 |
| PleI | GAGTC | 1 cut(s) | 2476 |
| PpsI | GAGTC | 1 cut(s) | 2476 |
| Psp124BI | GAGCTC | 1 cut(s) | 1860 |
| Psp6I | CCWGG | 5 cut(s) | 610, 684, 1419, 1507, 1846 |
| PspFI | CCCAGC | 1 cut(s) | 1328 |
| PspGI | CCWGG | 5 cut(s) | 610, 684, 1419, 1507, 1846 |
| PspPI | GGNCC | 8 cut(s) | 680, 831, 1206, 1754, 1807, 1990, 2082, 2269 |
| PspXI | VCTCGAGB | 1 cut(s) | 1383 |
| PstI | CTGCAG | 2 cut(s) | 1836, 1939 |
| PsuI | RGATCY | 3 cut(s) | 58, 329, 1372 |
| PvuII | CAGCTG | 1 cut(s) | 1223 |
| RsaI | GTAC | 4 cut(s) | 488, 1829, 1912, 2452 |
| RsaNI | GTAC | 4 cut(s) | 487, 1828, 1911, 2451 |
| RseI | CAYNNNNRTG | 5 cut(s) | 768, 906, 1179, 1272, 2364 |
| SacI | GAGCTC | 1 cut(s) | 1860 |
| SaqAI | TTAA | 8 cut(s) | 78, 263, 278, 872, 993, 1026, 1367, 2129 |
| Sau96I | GGNCC | 8 cut(s) | 680, 831, 1206, 1754, 1807, 1990, 2082, 2269 |
| SchI | GAGTC | 1 cut(s) | 2477 |
| ScrFI | CCNGG | 5 cut(s) | 612, 686, 1421, 1509, 1848 |
| SduI | GDGCHC | 7 cut(s) | 364, 513, 1390, 1860, 2002, 2176, 2373 |
| SfcI | CTRYAG | 3 cut(s) | 1631, 1832, 1935 |
| Sfr274I | CTCGAG | 2 cut(s) | 1095, 1383 |
| SinI | GGWCC | 3 cut(s) | 680, 1206, 1990 |
| SlaI | CTCGAG | 2 cut(s) | 1095, 1383 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 768, 906, 1179, 1272, 2364 |
| SmlI | CTYRAG | 5 cut(s) | 54, 1095, 1366, 1383, 2108 |
| SmoI | CTYRAG | 5 cut(s) | 54, 1095, 1366, 1383, 2108 |
| SseBI | AGGCCT | 3 cut(s) | 1465, 1685, 2186 |
| SsiI | CCGC | 9 cut(s) | 95, 539, 643, 804, 1049, 1678, 2048, 2070, 2404 |
| SspMI | CTAG | 7 cut(s) | 963, 1256, 1503, 1544, 1569, 1604, 1820 |
| SstI | GAGCTC | 1 cut(s) | 1860 |
| StuI | AGGCCT | 3 cut(s) | 1465, 1685, 2186 |
| StyD4I | CCNGG | 5 cut(s) | 610, 684, 1419, 1507, 1846 |
| StyI | CCWWGG | 3 cut(s) | 1803, 1993, 2059 |
| TaaI | ACNGT | 6 cut(s) | 447, 894, 1635, 1665, 1750, 2432 |
| TaiI | ACGT | 3 cut(s) | 234, 466, 2163 |
| TaqI | TCGA | 3 cut(s) | 1096, 1384, 1981 |
| TatI | WGTACW | 1 cut(s) | 486 |
| TauI | GCSGC | 2 cut(s) | 541, 1681 |
| TfiI | GAWTC | 3 cut(s) | 134, 473, 1925 |
| Tru1I | TTAA | 8 cut(s) | 78, 263, 278, 872, 993, 1026, 1367, 2129 |
| Tru9I | TTAA | 8 cut(s) | 78, 263, 278, 872, 993, 1026, 1367, 2129 |
| TscAI | CASTG | 5 cut(s) | 568, 1011, 1522, 2028, 2368 |
| TseFI | GTSAC | 3 cut(s) | 227, 2161, 2253 |
| Tsp45I | GTSAC | 3 cut(s) | 227, 2161, 2253 |
| TspGWI | ACGGA | 2 cut(s) | 37, 1945 |
| TspRI | CASTG | 5 cut(s) | 568, 1011, 1522, 2028, 2368 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 587 |
| Vha464I | CTTAAG | 1 cut(s) | 1366 |
| VneI | GTGCAC | 1 cut(s) | 1998 |
| VpaK11BI | GGWCC | 3 cut(s) | 680, 1206, 1990 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 609 |
| XapI | RAATTY | 5 cut(s) | 775, 1495, 1941, 2198, 2461 |
| XceI | RCATGY | 1 cut(s) | 1412 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 475, 1181 |
| XhoI | CTCGAG | 2 cut(s) | 1095, 1383 |
| XmiI | GTMKAC | 1 cut(s) | 1240 |
| XmnI | GAANNNNTTC | 3 cut(s) | 414, 496, 570 |
| XspI | CTAG | 7 cut(s) | 963, 1256, 1503, 1544, 1569, 1604, 1820 |
| Zsp2I | ATGCAT | 3 cut(s) | 109, 121, 936 |