pycom05g20090

Encoded by

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
22971244 .. 22972587
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g20090.1

Sequence Viewer

Length: 1344 bp
ATGCGTTTTTCTCAACATGGATTTGATACAGGTAGCCACAGGAGGGAAGGTGGGTGGCCACAATTTAAGTCCAAGTATATGACAGCTGATGAAATTGAAAATATACTCCGAATGCAGCTAGCTGCAACACACAGCAATGACCCATATGTTGATGATTACTACCACCAGTTTTGCCTTTCAAGAAAATCTGCTGGGGCCAAGTTGAAACACCATTTCTGCCCAACTCAATTAAGGGATCTTCCTCCTCGAGCACGAGCTAATACTGAACCACATGCTTTTCTCCAGGTTGATGCTCTTGGGAGAGTCCCCTTCTCCTCAATACGCAGGCCTCGCCCTCTTCTTGAAGTTGAGCCTCCAAATTCATCTAGCCCTGGCAACACTGAACAAAAGGTTTTTGAGAAGCCGCTAGAACAGGAGCCATTGCTTGCTGCTAGGGTTGCAATTGAGGATGGGCTTTGTCTTCTCCTGGATGTGGATGATATTGATCGTTTTCTACAATTCAATCAACTCCAAGATGGTGGAACCCAAGTGAGGCATCGGCGGCAGGCCTTGCTTGAAGGACTCGCAGGATCTCTTCAATTAGTTGACCCACTTGGCAACAATGGCCCCACAGTTGGGCTTCATAAGGATGATCTTGTATTTCTAAGGCTAGTCTCACTTCCCAAGGGCCGGAAGCTCCTGGCAAAGTACCTGCAGCTTTTATTTCCTGGTGGTGAGCTCGTGCGAATAGTCTGTATGGCCATCTTTCGTCATTTAAGGTTCTTGTTTGGTACCTACCCTTCTGATCCAGTGGCTGCAGAAACTACGAATATTCTTGCAAGGGTTGTTTCATCATGTGCTCGAGGTATGGACCTTGTTGCACTTAGTGCCTGTCTTGCAGCAGTTGTTTGTTCCTCAGAGCAACCCCCGCTTCGCCCCCTTGGAAGCCCTGCAGGAGATGGGGCTTCTCTTATCCTCAATTCAGTTCTTGAGAGGGCAACTGAACTCTTAACTGATCCTCATGCTGTAAGCAACTGCAATATGACCAATCGGCAACTTTGGCAGGCCTCCTTTGATGAGTTCTTTGGCCTTCTGACCAAGTACTGTGTAAATAAATATGATACTGTAATGCAGTCACTGCTAATGCAGGCCCCTCCGAATGTGGCTATTATTGGCTCAGATGCAGCCAGAGCAATTGGTCGTGAAATGCCAGTTGAACTGTTGCGTGCGAGCCTTCCTCACACTGATGAGCATCAGAGGCAGCTGTTGTTGGACTTCACGCAGCGGTCTATGCCCATAGGATCATCTAGCAGTGGTGATGGCGGAAATGGTTCTCACATGAATTCAGAGTCTGTGCTGAGTTGA

Protein Analysis

448

Amino Acids

49.34

Weight (kDa)

6.54

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011339)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 699
Acc65I GGTACC 1 cut(s) 770
AccB1I GGYRCC 1 cut(s) 770
AciI CCGC 5 cut(s) 404, 541, 908, 1264, 1302
AclWI GGATC 5 cut(s) 243, 577, 779, 989, 1288
AcoI YGGCCR 2 cut(s) 56, 738
AcsI RAATTY 2 cut(s) 358, 1321
AdeI CACNNNGTG 1 cut(s) 866
AfaI GTAC 3 cut(s) 689, 772, 1082
AfiI CCNNNNNNNGG 6 cut(s) 43, 472, 531, 614, 615, 669
AgsI TTSAA 8 cut(s) 98, 180, 205, 344, 502, 557, 578, 1196
AjnI CCWGG 5 cut(s) 282, 370, 465, 678, 706
AluBI AGCT 8 cut(s) 86, 118, 122, 257, 676, 697, 718, 1243
AluI AGCT 8 cut(s) 86, 118, 122, 257, 676, 697, 718, 1243
Alw21I GWGCWC 3 cut(s) 253, 720, 841
Alw26I GTCTC 1 cut(s) 658
AlwI GGATC 5 cut(s) 243, 577, 779, 989, 1288
AlwNI CAGNNNCTG 3 cut(s) 794, 1117, 1331
Ama87I CYCGRG 2 cut(s) 246, 840
ApeKI GCWGC 9 cut(s) 115, 122, 428, 694, 794, 878, 1163, 1240, 1261
ApoI RAATTY 2 cut(s) 358, 1321
Asp700I GAANNNNTTC 1 cut(s) 1309
Asp718I GGTACC 1 cut(s) 770
AspS9I GGNCC 5 cut(s) 195, 605, 667, 850, 1129
AsuHPI GGTGA 2 cut(s) 725, 1307
AsuNHI GCTAGC 1 cut(s) 118
AvaI CYCGRG 2 cut(s) 246, 840
AvaII GGWCC 1 cut(s) 850
BalI TGGCCA 2 cut(s) 58, 740
BanI GGYRCC 1 cut(s) 770
BanII GRGCYC 1 cut(s) 720
BarI GAAGNNNNNNTAC 2 cut(s) 763, 795
BauI CACGAG 2 cut(s) 252, 719
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 3 cut(s) 253, 720, 841
BbvI GCAGC 9 cut(s) 109, 127, 415, 706, 781, 890, 1175, 1252, 1273
BccI CCATC 5 cut(s) 443, 509, 749, 932, 1292
BciT130I CCWGG 5 cut(s) 284, 372, 467, 680, 708
BcoDI GTCTC 1 cut(s) 658
BfaI CTAG 6 cut(s) 119, 366, 407, 432, 650, 1287
BfmI CTRYAG 3 cut(s) 692, 795, 930
BfuAI ACCTGC 1 cut(s) 699
BmcAI AGTACT 1 cut(s) 1082
Bme1390I CCNGG 5 cut(s) 284, 372, 467, 680, 708
Bme18I GGWCC 1 cut(s) 850
BmeT110I CYCGRG 2 cut(s) 246, 840
BmgT120I GGNCC 5 cut(s) 195, 605, 667, 850, 1129
BmiI GGNNCC 6 cut(s) 196, 417, 523, 607, 772, 1131
BmrFI CCNGG 5 cut(s) 284, 372, 467, 680, 708
BmsI GCATC 4 cut(s) 280, 544, 1150, 1240
BmtI GCTAGC 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 452
BplI GAGNNNNNCTC 2 cut(s) 1201, 1233
BpmI CTGGAG 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 989
BsaBI GATNNNNATC 2 cut(s) 483, 1230
BsaJI CCNNGG 3 cut(s) 370, 663, 919
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 6 cut(s) 43, 472, 531, 614, 615, 669
Bse1I ACTGG 3 cut(s) 166, 788, 1190
Bse3DI GCAATG 2 cut(s) 142, 419
Bse8I GATNNNNATC 2 cut(s) 483, 1230
BseBI CCWGG 5 cut(s) 284, 372, 467, 680, 708
BseDI CCNNGG 3 cut(s) 370, 663, 919
BseGI GGATG 4 cut(s) 454, 475, 481, 634
BseJI GATNNNNATC 2 cut(s) 483, 1230
BseLI CCNNNNNNNGG 6 cut(s) 43, 472, 531, 614, 615, 669
BseMI GCAATG 2 cut(s) 142, 419
BseMII CTCAG 3 cut(s) 909, 1170, 1328
BseNI ACTGG 3 cut(s) 166, 788, 1190
BseRI GAGGAG 2 cut(s) 234, 304
BseXI GCAGC 9 cut(s) 109, 127, 415, 706, 781, 890, 1175, 1252, 1273
BseYI CCCAGC 1 cut(s) 191
BshNI GGYRCC 1 cut(s) 770
BsiHKAI GWGCWC 3 cut(s) 253, 720, 841
BsiHKCI CYCGRG 2 cut(s) 246, 840
BsiSI CCGG 1 cut(s) 670
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 6 cut(s) 43, 472, 531, 614, 615, 669
BsmAI GTCTC 1 cut(s) 658
BsmFI GGGAC 1 cut(s) 290
BsmI GAATGC 1 cut(s) 117
BsoBI CYCGRG 2 cut(s) 246, 840
Bsp1286I GDGCHC 3 cut(s) 253, 720, 841
Bsp143I GATC 7 cut(s) 235, 484, 569, 631, 784, 994, 1280
BspACI CCGC 5 cut(s) 404, 541, 908, 1264, 1302
BspCNI CTCAG 3 cut(s) 908, 1169, 1329
BspLI GGNNCC 6 cut(s) 196, 417, 523, 607, 772, 1131
BspMAI CTGCAG 3 cut(s) 696, 799, 934
BspMI ACCTGC 1 cut(s) 699
BspOI GCTAGC 1 cut(s) 122
BspPI GGATC 5 cut(s) 243, 577, 779, 989, 1288
BspT107I GGYRCC 1 cut(s) 770
BsrDI GCAATG 2 cut(s) 142, 419
BsrI ACTGG 3 cut(s) 166, 788, 1190
BssECI CCNNGG 3 cut(s) 370, 663, 919
BssMI GATC 7 cut(s) 235, 484, 569, 631, 784, 994, 1280
BssSI CACGAG 2 cut(s) 252, 719
BssT1I CCWWGG 2 cut(s) 663, 919
Bst2BI CACGAG 2 cut(s) 252, 719
Bst2UI CCWGG 5 cut(s) 284, 372, 467, 680, 708
Bst4CI ACNGT 4 cut(s) 613, 1085, 1105, 1200
Bst6I CTCTTC 2 cut(s) 342, 579
BstAPI GCANNNNNTGC 3 cut(s) 550, 866, 1117
BstC8I GCNNGC 8 cut(s) 120, 326, 426, 546, 1044, 1128, 1206, 1210
BstDEI CTNAG 5 cut(s) 644, 863, 895, 1156, 1337
BstF5I GGATG 4 cut(s) 454, 475, 481, 634
BstKTI GATC 7 cut(s) 238, 487, 572, 634, 787, 997, 1283
BstMAI GTCTC 1 cut(s) 658
BstMBI GATC 7 cut(s) 235, 484, 569, 631, 784, 994, 1280
BstNI CCWGG 5 cut(s) 284, 372, 467, 680, 708
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 5 cut(s) 282, 370, 465, 678, 706
BstSFI CTRYAG 3 cut(s) 692, 795, 930
BstV1I GCAGC 9 cut(s) 109, 127, 415, 706, 781, 890, 1175, 1252, 1273
BstV2I GAAGAC 1 cut(s) 452
BstX2I RGATCY 2 cut(s) 235, 569
BstXI CCANNNNNNTGG 1 cut(s) 518
BstYI RGATCY 2 cut(s) 235, 569
BtsCI GGATG 4 cut(s) 454, 475, 481, 634
BtsI GCAGTG 2 cut(s) 1115, 1297
BtsIMutI CAGTG 5 cut(s) 378, 795, 1115, 1221, 1297
BveI ACCTGC 1 cut(s) 699
Cac8I GCNNGC 8 cut(s) 120, 326, 426, 546, 1044, 1128, 1206, 1210
CaiI CAGNNNCTG 3 cut(s) 794, 1117, 1331
Cfr13I GGNCC 5 cut(s) 195, 605, 667, 850, 1129
Csp6I GTAC 3 cut(s) 688, 771, 1081
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 5 cut(s) 17, 272, 834, 1001, 1318
CviQI GTAC 3 cut(s) 688, 771, 1081
DdeI CTNAG 5 cut(s) 644, 863, 895, 1156, 1337
DpnI GATC 7 cut(s) 237, 486, 571, 633, 786, 996, 1282
DpnII GATC 7 cut(s) 235, 484, 569, 631, 784, 994, 1280
DraIII CACNNNGTG 1 cut(s) 866
EaeI YGGCCR 2 cut(s) 56, 738
Eam1104I CTCTTC 2 cut(s) 342, 579
EarI CTCTTC 2 cut(s) 342, 579
EciI GGCGGA 1 cut(s) 1317
Ecl136II GAGCTC 1 cut(s) 718
Eco130I CCWWGG 2 cut(s) 663, 919
Eco147I AGGCCT 3 cut(s) 328, 548, 1046
Eco24I GRGCYC 1 cut(s) 720
Eco47I GGWCC 1 cut(s) 850
Eco53kI GAGCTC 1 cut(s) 718
Eco88I CYCGRG 2 cut(s) 246, 840
EcoICRI GAGCTC 1 cut(s) 718
EcoO109I RGGNCCY 1 cut(s) 1129
EcoRI GAATTC 1 cut(s) 1321
EcoRII CCWGG 5 cut(s) 282, 370, 465, 678, 706
EcoT14I CCWWGG 2 cut(s) 663, 919
EcoT38I GRGCYC 1 cut(s) 720
ErhI CCWWGG 2 cut(s) 663, 919
FaeI CATG 5 cut(s) 20, 275, 837, 1004, 1321
FaqI GGGAC 1 cut(s) 290
FatI CATG 5 cut(s) 16, 271, 833, 1000, 1317
FauI CCCGC 1 cut(s) 915
FauNDI CATATG 1 cut(s) 145
FokI GGATG 4 cut(s) 461, 482, 488, 641
FriOI GRGCYC 1 cut(s) 720
FspBI CTAG 6 cut(s) 119, 366, 407, 432, 650, 1287
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 266
HapII CCGG 1 cut(s) 670
Hin1II CATG 5 cut(s) 20, 275, 837, 1004, 1321
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 3 cut(s) 303, 561, 1328
HpaII CCGG 1 cut(s) 670
HphI GGTGA 2 cut(s) 725, 1307
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 8 cut(s) 110, 784, 898, 1074, 1137, 1159, 1236, 1327
Hpy188III TCNNGA 4 cut(s) 180, 341, 968, 1181
Hpy8I GTNNAC 1 cut(s) 586
HpyAV CCTTC 6 cut(s) 41, 319, 551, 789, 1079, 1223
HpyCH4III ACNGT 4 cut(s) 613, 1085, 1105, 1200
HpyF3I CTNAG 5 cut(s) 644, 863, 895, 1156, 1337
Hsp92II CATG 5 cut(s) 20, 275, 837, 1004, 1321
KpnI GGTACC 1 cut(s) 774
Kzo9I GATC 7 cut(s) 235, 484, 569, 631, 784, 994, 1280
LmnI GCTCC 2 cut(s) 415, 681
Lsp1109I GCAGC 9 cut(s) 109, 127, 415, 706, 781, 890, 1175, 1252, 1273
LweI GCATC 4 cut(s) 280, 544, 1150, 1240
MaeI CTAG 6 cut(s) 119, 366, 407, 432, 650, 1287
MaeIII GTNAC 1 cut(s) 1113
MalI GATC 7 cut(s) 237, 486, 571, 633, 786, 996, 1282
MboI GATC 7 cut(s) 235, 484, 569, 631, 784, 994, 1280
MboII GAAGA 4 cut(s) 230, 329, 452, 566
MfeI CAATTG 2 cut(s) 441, 1173
MflI RGATCY 2 cut(s) 235, 569
MhlI GDGCHC 3 cut(s) 253, 720, 841
MlsI TGGCCA 2 cut(s) 58, 740
MluNI TGGCCA 2 cut(s) 58, 740
MlyI GAGTC 3 cut(s) 312, 555, 1337
MmeI TCCRAC 1 cut(s) 1230
Mox20I TGGCCA 2 cut(s) 58, 740
MroXI GAANNNNTTC 1 cut(s) 1309
MscI TGGCCA 2 cut(s) 58, 740
MseI TTAA 4 cut(s) 66, 230, 755, 989
MslI CAYNNNNRTG 3 cut(s) 135, 627, 1224
Msp20I TGGCCA 2 cut(s) 58, 740
MspA1I CMGCKG 3 cut(s) 86, 1243, 1264
MspI CCGG 1 cut(s) 670
MspR9I CCNGG 5 cut(s) 284, 372, 467, 680, 708
MunI CAATTG 2 cut(s) 441, 1173
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 5 cut(s) 284, 372, 467, 680, 708
NdeI CATATG 1 cut(s) 145
NdeII GATC 7 cut(s) 235, 484, 569, 631, 784, 994, 1280
NheI GCTAGC 1 cut(s) 118
NlaIII CATG 5 cut(s) 20, 275, 837, 1004, 1321
NlaIV GGNNCC 6 cut(s) 196, 417, 523, 607, 772, 1131
NmuCI GTSAC 1 cut(s) 1113
NspI RCATGY 1 cut(s) 275
PaeR7I CTCGAG 2 cut(s) 246, 840
PceI AGGCCT 3 cut(s) 328, 548, 1046
PctI GAATGC 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 1309
PfoI TCCNGGA 1 cut(s) 465
PleI GAGTC 3 cut(s) 311, 555, 1336
PpsI GAGTC 3 cut(s) 311, 555, 1336
Psp124BI GAGCTC 1 cut(s) 720
Psp6I CCWGG 5 cut(s) 282, 370, 465, 678, 706
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 5 cut(s) 282, 370, 465, 678, 706
PspN4I GGNNCC 6 cut(s) 196, 417, 523, 607, 772, 1131
PspPI GGNCC 5 cut(s) 195, 605, 667, 850, 1129
PspXI VCTCGAGB 2 cut(s) 246, 840
PstI CTGCAG 3 cut(s) 696, 799, 934
PstNI CAGNNNCTG 3 cut(s) 794, 1117, 1331
PsuI RGATCY 2 cut(s) 235, 569
PvuII CAGCTG 2 cut(s) 86, 1243
RsaI GTAC 3 cut(s) 689, 772, 1082
RsaNI GTAC 3 cut(s) 688, 771, 1081
RseI CAYNNNNRTG 3 cut(s) 135, 627, 1224
SacI GAGCTC 1 cut(s) 720
SaqAI TTAA 4 cut(s) 66, 230, 755, 989
Sau3AI GATC 7 cut(s) 235, 484, 569, 631, 784, 994, 1280
Sau96I GGNCC 5 cut(s) 195, 605, 667, 850, 1129
SbfI CCTGCAGG 1 cut(s) 934
ScaI AGTACT 1 cut(s) 1082
SchI GAGTC 3 cut(s) 312, 555, 1337
ScrFI CCNGG 5 cut(s) 284, 372, 467, 680, 708
SdaI CCTGCAGG 1 cut(s) 934
SduI GDGCHC 3 cut(s) 253, 720, 841
SfaNI GCATC 4 cut(s) 280, 544, 1150, 1240
SfcI CTRYAG 3 cut(s) 692, 795, 930
Sfr274I CTCGAG 2 cut(s) 246, 840
SinI GGWCC 1 cut(s) 850
SlaI CTCGAG 2 cut(s) 246, 840
SmiMI CAYNNNNRTG 3 cut(s) 135, 627, 1224
SmlI CTYRAG 3 cut(s) 246, 840, 968
SmoI CTYRAG 3 cut(s) 246, 840, 968
Sse8387I CCTGCAGG 1 cut(s) 934
SseBI AGGCCT 3 cut(s) 328, 548, 1046
SsiI CCGC 5 cut(s) 404, 541, 908, 1264, 1302
SspI AATATT 1 cut(s) 811
SspMI CTAG 6 cut(s) 119, 366, 407, 432, 650, 1287
SstI GAGCTC 1 cut(s) 720
StuI AGGCCT 3 cut(s) 328, 548, 1046
StyD4I CCNGG 5 cut(s) 282, 370, 465, 678, 706
StyI CCWWGG 2 cut(s) 663, 919
TaaI ACNGT 4 cut(s) 613, 1085, 1105, 1200
TaqI TCGA 2 cut(s) 247, 841
TatI WGTACW 1 cut(s) 1080
TauI GCSGC 2 cut(s) 406, 544
Tru1I TTAA 4 cut(s) 66, 230, 755, 989
Tru9I TTAA 4 cut(s) 66, 230, 755, 989
TscAI CASTG 5 cut(s) 385, 795, 1122, 1228, 1297
TseFI GTSAC 1 cut(s) 1113
TseI GCWGC 9 cut(s) 115, 122, 428, 694, 794, 878, 1163, 1240, 1261
Tsp45I GTSAC 1 cut(s) 1113
TspDTI ATGAA 5 cut(s) 105, 351, 611, 819, 1334
TspRI CASTG 5 cut(s) 385, 795, 1122, 1228, 1297
VpaK11BI GGWCC 1 cut(s) 850
XapI RAATTY 2 cut(s) 358, 1321
XceI RCATGY 1 cut(s) 275
XhoI CTCGAG 2 cut(s) 246, 840
XmnI GAANNNNTTC 1 cut(s) 1309
XspI CTAG 6 cut(s) 119, 366, 407, 432, 650, 1287
ZrmI AGTACT 1 cut(s) 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.