Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011339

Physical Location & Seq

Genomic Coordinates Reverse (-)

73562225 .. 73568002

Gene Structure 5778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00052830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2364 bp

ATGAGGTCTCCTTACTTCATAATAGTTCCCTTCTCAAAAGGGAGAAACGCCAAGTTTGGTGAGGTATTCGATGCGTCACAATATGCATTTTTTGGTCAAGATTCTGTTGAGGAAGTTGAGTTGGGAGGTTTAGAAGATGAAGAGGAGACTGCAGTTGCGCTTGAAGAGGAGGAGTTTCTATATAACAAAGAAGAGGGTGGTGTCTCTCTATCTGATGCTGATGATCTGTCTTTAACTTTTGAAAAGTTGAACAAGGATGTAAATGGAACTAGGAGCACTGGAATAATTGGTGATAGAGGATCCAGAGAAAGTTCATCTGCTGCTGAATGGGTGCAGGAAAGTTTCCCTAACTGGATTGATGAAGAAATATTTGATGCTGAAAGCATTCAAGATGGGAAAAGATGGTCTTCAGGACCGTTTTCTTCTATTCGTCCTACAGAAGCAAAGCCTTTGTACAGAACTTCTTCATATCCTGAGCCCCCACAGCTGCCACAGCAGCAGCAGCAACAACATCAATATTTTTCTAGTGAACCAATTCTGGTGCCAAAATCTTCTTTTACTTCATACCCACCTCCAGGGGGAATATCTTCACCAAACCTTTCTCCCTATTCTAACTCTCCACTTCAAATGACTGGGTTACCTCATGGATCGCATTTTGGTGGAAATTTGCCTCATCTGACGCCTGGTCTTCCTGTTAATACTCGTCCCCTTACTCAATGGGCCAACCAAAGTGGCTCATTTGGAGATCATCCTAGTCATTTAAATAATCTGTTGCAGCAACAGTTATCTCATCAGAATGGTTTGCCTCCACAGTTGATGCATCAGCCACAGCAGCCGCATCCTAGACTGCACCATCCAGTTCAGCAACCATTCAGCCATATGTCAGCAATGCAGTCTCAACTATTTAACCCCCACCTTCCTCCATCCCCACCCTTGATGAACAAGTTTGAAGCAATGTTTGGTATGAGTGATATTAGAGATGAAAGGTCAAGATTAGCTCAGAAAAGTAGACAGAATATGCGTTTTTCTCAACATGGCTTTGATACAGGTAGCTACAAAAGTGGTGGTGGGTGGCCATCATTTAGGTCCAAGTATATGACAGCTGATGAAATTGAGGGTATACTTCGAATGCAGCTTGCTGCAACACACAGCAATGACCCATATGTAGATGATTATTACCACCAGTATTGCCTTGCAAGAAAATCTGCTGGGGCGAAGTTGAAACATCATTTCTGTCCAACTCATTTAAGGGATCTTCCTCCTCGGGCACGAGCTAATGCTGAACCACATGCTTTTCTCCAAGTTGATGCTCTTGGGAGGGTCCCATTCTCTTCAATACGCAGGCCTCGCCCTCTTCTTGAAGTGGAGCCACCAAATTCATCTAGTCCGGGCAACACTGAACAGAAGGTTTCTGAGAAGCCTCTAGAACAGGAGCCCTTGCTTGCTGCTAGGGTTACAATTGAGGATGGACTTTGTCTTCTCCTGGATGTGGATGATATCGATCGTTTTTTACAATTCAATCAGCTCCAAGATGGTGGAACGCAGTTGAGGCGTAGGCGTCAGGGCTTGCTAGAAGGGCTCGCAGCATCTCTACAATTGGTTGATCCACTTGGGAAAAATGACCACACAGATGGGCTTGCTCTGAAGGATGATCTTGTGTTCCTGAGGTTAGTCTCTCTACCCAAGGGTCGAAAGCTTCTTGTCAAGTACCTACAGCTTCTTTTTCCAGGTGGTGAGCTCATGCGAATTGTCTGTATGGCCATCTTCCGCCATTTAAGGTTCTTGTTTGGTATCCTCCCTTCTGATCCAAGGGCTGCAGAAACTATAAATAATATCGCTGGGGTTGTTTCATCATGTGTTCGAGGTATGGACCTTGGTGCACTTAGTGCTTGTCTAGCAGCAGTGGTTTGTTCCTCGGAGCAACCCCCGCTTCGGCCCATTGGAAGCTCTGCAGGAGATGGTGCTTCCCTTATTCTGAATGCTGTTCTTGATAGGGCAACTGAACTCTTAACTGATCCTAATGCTGCTAGCAACTACAATATGACTAATCGGGCACTTTGGCAGGCCTCCTTTGATCAATTCTTTGGCCTTCTGACCAAGTATTGTGTAAACAAGTATGATACTATAATGCAGTCACTGCTAATGCAGGCCCCCACGAATATGGCCGTTATTGGTTCAGATGCAGCCAGAGCTATTAGTCGTGAAATGCCAGTTGAGCTGCTGCGTGCGAGTCTTCCTCACACCGATGATCACCAGAGACAGTTGCTCTTAGATTTCACGCAGCGGTCCATGCCTGTGGGAGGATCTAACAATCACGATGGGGGAAATGGTGCCCACATAAATTCAGAGTCTGTGCTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000290 GO:0000932 GO:0000956 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0033962 GO:0034622 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PAT1

Protein Analysis

787

Amino Acids

87.19

Weight (kDa)

5.81

Isoelectric Point (pI)

61.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79090 AT1G79090 AT1G79090
fragaria_vesca	FvH4_3g15840 FvH4_3g15840
malus_domestica	MD05G1219500.v1.1 MD10G1201900.v1.1
prunus_persica	Prupe.4G140400_v2.0.a1
pyrus_communis	pycom05g20090 pycom10g17270
rosa_chinensis	RchiOBHm_Chr5g0026641
rosa_laevigata	RLG00000032942
rosa_multiflora	Rmu_sc0004490.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052830
rosa_rugosa	Rorug05G0094500
rosa_samantha	Rh5AG188000 Rh5BG184400 Rh5CG204300 Rh5DG186700
rosa_wichuraiana	Rw5G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	541, 2330
AccI	GTMKAC	2 cut(s)	1009, 1120
AciI	CCGC	4 cut(s)	836, 1768, 1928, 2284
AclWI	GGATC	8 cut(s)	294, 307, 655, 1260, 1598, 1799, 2009, 2311
AcoI	YGGCCR	3 cut(s)	1073, 1758, 2163
AcsI	RAATTY	3 cut(s)	664, 1375, 2341
AcuI	CTGAAG	2 cut(s)	393, 1664
AcyI	GRCGYC	2 cut(s)	680, 1558
AdeI	CACNNNGTG	1 cut(s)	1886
AfaI	GTAC	2 cut(s)	455, 1709
AfiI	CCNNNNNNNGG	5 cut(s)	575, 578, 1489, 1932, 2300
AhdI	GACNNNNNGTC	1 cut(s)	684
AjnI	CCWGG	4 cut(s)	574, 682, 1482, 1726
AjuI	GAANNNNNNNTTGG	2 cut(s)	942, 974
Alw21I	GWGCWC	3 cut(s)	278, 1740, 1882
Alw26I	GTCTC	6 cut(s)	12, 140, 208, 900, 1678, 2251
Alw44I	GTGCAC	1 cut(s)	1878
AlwI	GGATC	8 cut(s)	294, 307, 655, 1260, 1598, 1799, 2009, 2311
AlwNI	CAGNNNCTG	2 cut(s)	2137, 2351
Ama87I	CYCGRG	1 cut(s)	1263
AoxI	GGCC	9 cut(s)	720, 1073, 1343, 1758, 1934, 2064, 2086, 2148, 2163
ApaLI	GTGCAC	1 cut(s)	1878
ApoI	RAATTY	3 cut(s)	664, 1375, 2341
Asp700I	GAANNNNTTC	4 cut(s)	384, 463, 534, 586
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	8 cut(s)	413, 720, 1086, 1321, 1870, 1935, 2149, 2286
AsuC2I	CCSGG	1 cut(s)	1389
AsuHPI	GGTGA	5 cut(s)	71, 302, 582, 1745, 2243
AsuII	TTCGAA	1 cut(s)	1126
AsuNHI	GCTAGC	1 cut(s)	2027
AvaI	CYCGRG	1 cut(s)	1263
AvaII	GGWCC	5 cut(s)	413, 1086, 1321, 1870, 2286
AxyI	CCTNAGG	1 cut(s)	1664
BaeGI	GKGCMC	4 cut(s)	1270, 1882, 2056, 2335
BalI	TGGCCA	2 cut(s)	1075, 1760
BamHI	GGATCC	1 cut(s)	299
BanI	GGYRCC	2 cut(s)	541, 2330
BanII	GRGCYC	4 cut(s)	480, 1437, 1581, 1740
BarI	GAAGNNNNNNTAC	2 cut(s)	1783, 1815
BauI	CACGAG	1 cut(s)	1269
BbsI	GAAGAC	4 cut(s)	399, 680, 1469, 2225
Bbv12I	GWGCWC	3 cut(s)	278, 1740, 1882
BceAI	ACGGC	1 cut(s)	2150
BciT130I	CCWGG	4 cut(s)	576, 684, 1484, 1728
BciVI	GTATCC	1 cut(s)	1802
BclI	TGATCA	2 cut(s)	2074, 2248
BcnI	CCSGG	1 cut(s)	1389
BcoDI	GTCTC	6 cut(s)	12, 140, 208, 900, 1678, 2251
BfmI	CTRYAG	5 cut(s)	150, 435, 1712, 1815, 1950
BfuI	GTATCC	1 cut(s)	1802
Bme1390I	CCNGG	5 cut(s)	576, 684, 1389, 1484, 1728
Bme18I	GGWCC	5 cut(s)	413, 1086, 1321, 1870, 2286
BmeRI	GACNNNNNGTC	1 cut(s)	684
BmeT110I	CYCGRG	1 cut(s)	1263
BmgT120I	GGNCC	8 cut(s)	413, 720, 1086, 1321, 1870, 1935, 2149, 2286
BmiI	GGNNCC	8 cut(s)	301, 543, 1322, 1323, 1368, 1434, 2151, 2332
BmrFI	CCNGG	5 cut(s)	576, 684, 1389, 1484, 1728
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	9 cut(s)	61, 205, 364, 807, 829, 847, 1297, 1595, 2170
BmtI	GCTAGC	1 cut(s)	2031
BmuI	ACTGGG	1 cut(s)	642
BpiI	GAAGAC	4 cut(s)	399, 680, 1469, 2225
BplI	GAGNNNNNCTC	2 cut(s)	2221, 2253
BpmI	CTGGAG	1 cut(s)	558
Bpu10I	CCTNAGC	1 cut(s)	474
Bpu14I	TTCGAA	1 cut(s)	1126
BpuMI	CCSGG	1 cut(s)	1389
Bsa29I	ATCGAT	1 cut(s)	1500
BsaBI	GATNNNNATC	1 cut(s)	1500
BsaHI	GRCGYC	2 cut(s)	680, 1558
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	6 cut(s)	575, 1262, 1683, 1808, 1873, 1914
Bsc4I	CCNNNNNNNGG	5 cut(s)	575, 578, 1489, 1932, 2300
Bse1I	ACTGG	6 cut(s)	283, 356, 637, 857, 1183, 2210
Bse21I	CCTNAGG	1 cut(s)	1664
Bse3DI	GCAATG	3 cut(s)	894, 960, 1159
Bse8I	GATNNNNATC	1 cut(s)	1500
BseBI	CCWGG	4 cut(s)	576, 684, 1484, 1728
BseCI	ATCGAT	1 cut(s)	1500
BseDI	CCNNGG	6 cut(s)	575, 1262, 1683, 1808, 1873, 1914
BseGI	GGATG	9 cut(s)	262, 748, 838, 853, 923, 1471, 1492, 1498, 1654
BseJI	GATNNNNATC	1 cut(s)	1500
BseLI	CCNNNNNNNGG	5 cut(s)	575, 578, 1489, 1932, 2300
BseMI	GCAATG	3 cut(s)	894, 960, 1159
BseMII	CTCAG	4 cut(s)	465, 1013, 1404, 1655
BseNI	ACTGG	6 cut(s)	283, 356, 637, 857, 1183, 2210
BseRI	GAGGAG	4 cut(s)	158, 182, 185, 1251
BseSI	GKGCMC	4 cut(s)	1270, 1882, 2056, 2335
BseYI	CCCAGC	2 cut(s)	1208, 1838
BsgI	GTGCAG	2 cut(s)	353, 833
Bsh1285I	CGRYCG	1 cut(s)	1504
BshFI	GGCC	9 cut(s)	722, 1075, 1345, 1760, 1936, 2066, 2088, 2150, 2165
BshNI	GGYRCC	2 cut(s)	541, 2330
BshVI	ATCGAT	1 cut(s)	1500
BsiEI	CGRYCG	1 cut(s)	1504
BsiHKAI	GWGCWC	3 cut(s)	278, 1740, 1882
BsiHKCI	CYCGRG	1 cut(s)	1263
BsiSI	CCGG	1 cut(s)	1388
BslFI	GGGAC	2 cut(s)	690, 1307
BslI	CCNNNNNNNGG	5 cut(s)	575, 578, 1489, 1932, 2300
BsmAI	GTCTC	6 cut(s)	12, 140, 208, 900, 1678, 2251
BsmFI	GGGAC	2 cut(s)	690, 1307
BsmI	GAATGC	3 cut(s)	384, 1134, 1984
BsnI	GGCC	9 cut(s)	722, 1075, 1345, 1760, 1936, 2066, 2088, 2150, 2165
Bso31I	GGTCTC	1 cut(s)	12
BsoBI	CYCGRG	1 cut(s)	1263
Bsp119I	TTCGAA	1 cut(s)	1126
Bsp1286I	GDGCHC	9 cut(s)	278, 480, 1270, 1437, 1581, 1740, 1882, 2056, 2335
Bsp1407I	TGTACA	1 cut(s)	453
BspACI	CCGC	4 cut(s)	836, 1768, 1928, 2284
BspANI	GGCC	9 cut(s)	722, 1075, 1345, 1760, 1936, 2066, 2088, 2150, 2165
BspCNI	CTCAG	4 cut(s)	466, 1012, 1405, 1656
BspDI	ATCGAT	1 cut(s)	1500
BspLI	GGNNCC	8 cut(s)	301, 543, 1322, 1323, 1368, 1434, 2151, 2332
BspMAI	CTGCAG	3 cut(s)	154, 1819, 1954
BspOI	GCTAGC	1 cut(s)	2031
BspPI	GGATC	8 cut(s)	294, 307, 655, 1260, 1598, 1799, 2009, 2311
BspT104I	TTCGAA	1 cut(s)	1126
BspT107I	GGYRCC	2 cut(s)	541, 2330
BspTNI	GGTCTC	1 cut(s)	12
BsrDI	GCAATG	3 cut(s)	894, 960, 1159
BsrGI	TGTACA	1 cut(s)	453
BsrI	ACTGG	6 cut(s)	283, 356, 637, 857, 1183, 2210
BssECI	CCNNGG	6 cut(s)	575, 1262, 1683, 1808, 1873, 1914
BssNAI	GTATAC	1 cut(s)	1121
BssNI	GRCGYC	2 cut(s)	680, 1558
BssSI	CACGAG	1 cut(s)	1269
BssT1I	CCWWGG	3 cut(s)	1683, 1808, 1873
Bst1107I	GTATAC	1 cut(s)	1121
Bst2BI	CACGAG	1 cut(s)	1269
Bst2UI	CCWGG	4 cut(s)	576, 684, 1484, 1728
Bst4CI	ACNGT	4 cut(s)	417, 783, 813, 2262
Bst6I	CTCTTC	5 cut(s)	135, 159, 186, 1336, 1359
BstACI	GRCGYC	2 cut(s)	680, 1558
BstAPI	GCANNNNNTGC	2 cut(s)	1886, 2137
BstAUI	TGTACA	1 cut(s)	453
BstBI	TTCGAA	1 cut(s)	1126
BstDEI	CTNAG	7 cut(s)	474, 999, 1413, 1664, 1883, 2269, 2357
BstEII	GGTNACC	1 cut(s)	636
BstENI	CCTNNNNNAGG	1 cut(s)	2298
BstF5I	GGATG	9 cut(s)	262, 748, 838, 853, 923, 1471, 1492, 1498, 1654
BstHHI	GCGC	1 cut(s)	160
BstMAI	GTCTC	6 cut(s)	12, 140, 208, 900, 1678, 2251
BstMCI	CGRYCG	1 cut(s)	1504
BstNI	CCWGG	4 cut(s)	576, 684, 1484, 1728
BstNSI	RCATGY	1 cut(s)	1292
BstPI	GGTNACC	1 cut(s)	636
BstSCI	CCNGG	5 cut(s)	574, 682, 1387, 1482, 1726
BstSFI	CTRYAG	5 cut(s)	150, 435, 1712, 1815, 1950
BstSLI	GKGCMC	4 cut(s)	1270, 1882, 2056, 2335
BstV2I	GAAGAC	4 cut(s)	399, 680, 1469, 2225
BstX2I	RGATCY	3 cut(s)	299, 1252, 2303
BstXI	CCANNNNNNTGG	4 cut(s)	1535, 1631, 2161, 2296
BstYI	RGATCY	3 cut(s)	299, 1252, 2303
BstZ17I	GTATAC	1 cut(s)	1121
Bsu15I	ATCGAT	1 cut(s)	1500
Bsu36I	CCTNAGG	1 cut(s)	1664
BsuI	GTATCC	1 cut(s)	1802
BsuRI	GGCC	9 cut(s)	722, 1075, 1345, 1760, 1936, 2066, 2088, 2150, 2165
BsuTUI	ATCGAT	1 cut(s)	1500
BtsCI	GGATG	9 cut(s)	262, 748, 838, 853, 923, 1471, 1492, 1498, 1654
BtsI	GCAGTG	2 cut(s)	1908, 2135
BtsIMutI	CAGTG	4 cut(s)	276, 1395, 1908, 2135
CaiI	CAGNNNCTG	2 cut(s)	2137, 2351
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	8 cut(s)	413, 720, 1086, 1321, 1870, 1935, 2149, 2286
ClaI	ATCGAT	1 cut(s)	1500
CseI	GACGC	3 cut(s)	63, 688, 1547
Csp6I	GTAC	2 cut(s)	454, 1708
CspCI	CAANNNNNGTGG	6 cut(s)	712, 747, 1045, 1080, 1169, 1204
CviAII	CATG	6 cut(s)	644, 1034, 1289, 1741, 1854, 2290
CviQI	GTAC	2 cut(s)	454, 1708
DdeI	CTNAG	7 cut(s)	474, 999, 1413, 1664, 1883, 2269, 2357
DraI	TTTAAA	1 cut(s)	762
DraIII	CACNNNGTG	1 cut(s)	1886
DriI	GACNNNNNGTC	1 cut(s)	684
EaeI	YGGCCR	3 cut(s)	1073, 1758, 2163
Eam1104I	CTCTTC	5 cut(s)	135, 159, 186, 1336, 1359
Eam1105I	GACNNNNNGTC	1 cut(s)	684
EarI	CTCTTC	5 cut(s)	135, 159, 186, 1336, 1359
EciI	GGCGGA	1 cut(s)	1757
Ecl136II	GAGCTC	1 cut(s)	1738
Eco130I	CCWWGG	3 cut(s)	1683, 1808, 1873
Eco147I	AGGCCT	2 cut(s)	1345, 2066
Eco24I	GRGCYC	4 cut(s)	480, 1437, 1581, 1740
Eco31I	GGTCTC	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	1498
Eco47I	GGWCC	5 cut(s)	413, 1086, 1321, 1870, 2286
Eco53kI	GAGCTC	1 cut(s)	1738
Eco57I	CTGAAG	2 cut(s)	393, 1664
Eco81I	CCTNAGG	1 cut(s)	1664
Eco88I	CYCGRG	1 cut(s)	1263
Eco91I	GGTNACC	1 cut(s)	636
EcoICRI	GAGCTC	1 cut(s)	1738
EcoNI	CCTNNNNNAGG	1 cut(s)	2298
EcoO109I	RGGNCCY	2 cut(s)	1321, 2149
EcoO65I	GGTNACC	1 cut(s)	636
EcoRII	CCWGG	4 cut(s)	574, 682, 1482, 1726
EcoRV	GATATC	1 cut(s)	1498
EcoT14I	CCWWGG	3 cut(s)	1683, 1808, 1873
EcoT22I	ATGCAT	2 cut(s)	88, 822
EcoT38I	GRGCYC	4 cut(s)	480, 1437, 1581, 1740
ErhI	CCWWGG	3 cut(s)	1683, 1808, 1873
FaeI	CATG	6 cut(s)	647, 1037, 1292, 1744, 1857, 2293
FalI	AAGNNNNNCTT	2 cut(s)	391, 423
FaqI	GGGAC	2 cut(s)	690, 1307
FatI	CATG	6 cut(s)	643, 1033, 1288, 1740, 1853, 2289
FauI	CCCGC	1 cut(s)	1935
FauNDI	CATATG	2 cut(s)	879, 1162
FbaI	TGATCA	2 cut(s)	2074, 2248
FblI	GTMKAC	2 cut(s)	1009, 1120
FokI	GGATG	9 cut(s)	269, 735, 825, 840, 910, 1478, 1499, 1505, 1661
FriOI	GRGCYC	4 cut(s)	480, 1437, 1581, 1740
GlaI	GCGC	1 cut(s)	159
GsaI	CCCAGC	2 cut(s)	1212, 1842
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	9 cut(s)	722, 1075, 1345, 1760, 1936, 2066, 2088, 2150, 2165
HapII	CCGG	1 cut(s)	1388
HgaI	GACGC	3 cut(s)	63, 688, 1547
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	2 cut(s)	680, 1558
Hin1II	CATG	6 cut(s)	647, 1037, 1292, 1744, 1857, 2293
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	1694
HinfI	GANTC	3 cut(s)	101, 2230, 2348
HpaII	CCGG	1 cut(s)	1388
HphI	GGTGA	5 cut(s)	71, 302, 582, 1745, 2243
Hpy166II	GTNNAC	5 cut(s)	530, 1010, 1121, 1880, 2110
Hpy8I	GTNNAC	5 cut(s)	530, 1010, 1121, 1880, 2110
HpyAV	CCTTC	7 cut(s)	40, 926, 1399, 1568, 1639, 1809, 2099
HpyCH4III	ACNGT	4 cut(s)	417, 783, 813, 2262
HpyF3I	CTNAG	7 cut(s)	474, 999, 1413, 1664, 1883, 2269, 2357
Hsp92I	GRCGYC	2 cut(s)	680, 1558
Hsp92II	CATG	6 cut(s)	647, 1037, 1292, 1744, 1857, 2293
HspAI	GCGC	1 cut(s)	158
KflI	GGGWCCC	1 cut(s)	1321
Ksp22I	TGATCA	2 cut(s)	2074, 2248
LmnI	GCTCC	5 cut(s)	273, 1366, 1432, 1530, 1918
LweI	GCATC	9 cut(s)	61, 205, 364, 807, 829, 847, 1297, 1595, 2170
MaeIII	GTNAC	4 cut(s)	75, 636, 1453, 2133
MfeI	CAATTG	2 cut(s)	1458, 1595
MflI	RGATCY	3 cut(s)	299, 1252, 2303
MhlI	GDGCHC	9 cut(s)	278, 480, 1270, 1437, 1581, 1740, 1882, 2056, 2335
MlsI	TGGCCA	2 cut(s)	1075, 1760
MluNI	TGGCCA	2 cut(s)	1075, 1760
MlyI	GAGTC	2 cut(s)	2239, 2357
MmeI	TCCRAC	1 cut(s)	1262
Mox20I	TGGCCA	2 cut(s)	1075, 1760
Mph1103I	ATGCAT	2 cut(s)	88, 822
MroXI	GAANNNNTTC	4 cut(s)	384, 463, 534, 586
MscI	TGGCCA	2 cut(s)	1075, 1760
MseI	TTAA	7 cut(s)	233, 696, 761, 906, 1247, 1775, 2009
MslI	CAYNNNNRTG	7 cut(s)	657, 795, 1152, 1629, 2159, 2244, 2294
Msp20I	TGGCCA	2 cut(s)	1075, 1760
MspA1I	CMGCKG	3 cut(s)	487, 1103, 2284
MspI	CCGG	1 cut(s)	1388
MspR9I	CCNGG	5 cut(s)	576, 684, 1389, 1484, 1728
MunI	CAATTG	2 cut(s)	1458, 1595
Mva1269I	GAATGC	3 cut(s)	384, 1134, 1984
MvaI	CCWGG	4 cut(s)	576, 684, 1484, 1728
NciI	CCSGG	1 cut(s)	1389
NdeI	CATATG	2 cut(s)	879, 1162
NheI	GCTAGC	1 cut(s)	2027
NlaIII	CATG	6 cut(s)	647, 1037, 1292, 1744, 1857, 2293
NlaIV	GGNNCC	8 cut(s)	301, 543, 1322, 1323, 1368, 1434, 2151, 2332
NmuCI	GTSAC	2 cut(s)	75, 2133
NsiI	ATGCAT	2 cut(s)	88, 822
NspI	RCATGY	1 cut(s)	1292
NspV	TTCGAA	1 cut(s)	1126
PceI	AGGCCT	2 cut(s)	1345, 2066
PctI	GAATGC	3 cut(s)	384, 1134, 1984
PdmI	GAANNNNTTC	4 cut(s)	384, 463, 534, 586
PfeI	GAWTC	1 cut(s)	101
PflFI	GACNNNGTC	1 cut(s)	1473
PfoI	TCCNGGA	1 cut(s)	1482
Ple19I	CGATCG	1 cut(s)	1504
PleI	GAGTC	2 cut(s)	2238, 2356
PpsI	GAGTC	2 cut(s)	2238, 2356
PpuMI	RGGWCCY	1 cut(s)	1321
Psp124BI	GAGCTC	1 cut(s)	1740
Psp5II	RGGWCCY	1 cut(s)	1321
Psp6I	CCWGG	4 cut(s)	574, 682, 1482, 1726
PspEI	GGTNACC	1 cut(s)	636
PspFI	CCCAGC	2 cut(s)	1208, 1838
PspGI	CCWGG	4 cut(s)	574, 682, 1482, 1726
PspN4I	GGNNCC	8 cut(s)	301, 543, 1322, 1323, 1368, 1434, 2151, 2332
PspPI	GGNCC	8 cut(s)	413, 720, 1086, 1321, 1870, 1935, 2149, 2286
PspPPI	RGGWCCY	1 cut(s)	1321
PstI	CTGCAG	3 cut(s)	154, 1819, 1954
PstNI	CAGNNNCTG	2 cut(s)	2137, 2351
PsuI	RGATCY	3 cut(s)	299, 1252, 2303
PsyI	GACNNNGTC	1 cut(s)	1473
PvuI	CGATCG	1 cut(s)	1504
PvuII	CAGCTG	2 cut(s)	487, 1103
RsaI	GTAC	2 cut(s)	455, 1709
RsaNI	GTAC	2 cut(s)	454, 1708
RseI	CAYNNNNRTG	7 cut(s)	657, 795, 1152, 1629, 2159, 2244, 2294
SacI	GAGCTC	1 cut(s)	1740
SaqAI	TTAA	7 cut(s)	233, 696, 761, 906, 1247, 1775, 2009
Sau96I	GGNCC	8 cut(s)	413, 720, 1086, 1321, 1870, 1935, 2149, 2286
SchI	GAGTC	2 cut(s)	2239, 2357
ScrFI	CCNGG	5 cut(s)	576, 684, 1389, 1484, 1728
SduI	GDGCHC	9 cut(s)	278, 480, 1270, 1437, 1581, 1740, 1882, 2056, 2335
SfaNI	GCATC	9 cut(s)	61, 205, 364, 807, 829, 847, 1297, 1595, 2170
SfcI	CTRYAG	5 cut(s)	150, 435, 1712, 1815, 1950
SfuI	TTCGAA	1 cut(s)	1126
SinI	GGWCC	5 cut(s)	413, 1086, 1321, 1870, 2286
SmiI	ATTTAAAT	1 cut(s)	762
SmiMI	CAYNNNNRTG	7 cut(s)	657, 795, 1152, 1629, 2159, 2244, 2294
SseBI	AGGCCT	2 cut(s)	1345, 2066
SsiI	CCGC	4 cut(s)	836, 1768, 1928, 2284
SspI	AATATT	2 cut(s)	369, 518
SstI	GAGCTC	1 cut(s)	1740
StuI	AGGCCT	2 cut(s)	1345, 2066
StyD4I	CCNGG	5 cut(s)	574, 682, 1387, 1482, 1726
StyI	CCWWGG	3 cut(s)	1683, 1808, 1873
SwaI	ATTTAAAT	1 cut(s)	762
TaaI	ACNGT	4 cut(s)	417, 783, 813, 2262
TaqI	TCGA	5 cut(s)	69, 1126, 1500, 1690, 1861
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	1 cut(s)	838
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	7 cut(s)	233, 696, 761, 906, 1247, 1775, 2009
Tru9I	TTAA	7 cut(s)	233, 696, 761, 906, 1247, 1775, 2009
TscAI	CASTG	4 cut(s)	283, 1402, 1908, 2142
TseFI	GTSAC	2 cut(s)	75, 2133
Tsp45I	GTSAC	2 cut(s)	75, 2133
TspRI	CASTG	4 cut(s)	283, 1402, 1908, 2142
Tth111I	GACNNNGTC	1 cut(s)	1473
VneI	GTGCAC	1 cut(s)	1878
VpaK11BI	GGWCC	5 cut(s)	413, 1086, 1321, 1870, 2286
XagI	CCTNNNNNAGG	1 cut(s)	2298
XapI	RAATTY	3 cut(s)	664, 1375, 2341
XbaI	TCTAGA	1 cut(s)	1423
XceI	RCATGY	1 cut(s)	1292
XmiI	GTMKAC	2 cut(s)	1009, 1120
XmnI	GAANNNNTTC	4 cut(s)	384, 463, 534, 586
Zsp2I	ATGCAT	2 cut(s)	88, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.