Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011339

Physical Location & Seq

Genomic Coordinates Forward (+)

20276454 .. 20284218

Gene Structure 7765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG184400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2343 bp

ATGGTAGAAATGTGGTGGTATATTTTGATATTTGTTCAGAACACTAGTGCAAGAAAATTTAAGTGGTGTAACTGTTTGTTCTTTTCTTATTGGCAGGGTGGTGTCTCTCTATCTGATGCTGATGATCTGTCTTTAACTTTTGAAAAGTTGAACAAGGATGTAAATGGAACTAGGAGCACTGGAATAATTGGTGATAGAGGATCCAGAGAAAGTTCATCTGCTGCTGAATGGGTGCAGGAAAGTTTCCCTAACTGGATTGATGAAGAAATATTTGATGCTGAAAGCATTCAAGATGGGAAAAGATGGTCTTCAGGACCGTTTTCTTCTATTCGTCCTACAGAAGCAAAGCCTTTGTACAGAACTTCTTCATATCCTGAGCCCCCACAGCTGCCACAGCAGCAGCAACAACAACATCAATATTTTTCTAGCGAACCAATTCTGGTGCCAAAATCTTCTTTTACTTCATATCCACCTCCAGGTGGCAGATCTCAGCAGGGTTCACCTAACCACCAATCAGGCCACATGAATATTCCTTATGCTGCTGGTGGACCTCAGGGGGGAATATCTTCACCAAACCTTTCTCCCTACTCTAACTCTCCACTTCAAATGACTGGGTTACCTCATGGATCACATTTTGGTGGAAATTTGCCTCATCTGACTCCGGGTCTTCCTGTTAATACTCGTCCCCTTACTCAATGGGCCAACCAAAGTGGCTCATTTGGAGATCATCCTAGTCATTTAAATAATCTGTTGCAGCAACAGTTATCTCATCAGAATGGTTTGCCTCCACAGTTGATGCATCAGCCACAGCAGCCGCATCCTAGACTGCACCATCCAGTTCAGCAACCATTCAGCCATATGTCAGCAATGCAGTCTCAACTATTTAACCCCCACCTTCCTCCATCCCCACCCTTGATGAACAAGTTTGAAGCAATGTTCGGTATGAGTGATATTAGAGATGAAAGGTCAAGATTAGCTCAGAAAGGTAGACAGAATATGCGTTTTTCTCAACATGGCTTTGATACAGGTAGCTACAAAAGTGGTGGTGGGTGGCCATCATTTAGGTCCAAGTATATGACAGCTGATGAAATTGAGGGTATACTTCGAATGCAGCTTGCTGCAACACACAGCAATGACCCATATGTAGATGATTATTACCACCAGTATTGCCTTGCAAGAAAATCTGCTGGGGCGAAGCTGAAACATCATTTCTGTCCAACTCATTTAAGGGATCTTCCTCCTCGGGCACGAGCTAATGCTGAACCACATGCTTTTCTCCAAGTTGATGCTCTTGGGAGGGTCCCATTCTCTTCAATACGCAGGCCTCGCCCTCTTCTTGAAGTGGAGCCACCAAATTCATCTAGTCCGGGCAACACTGAACAGAAGGTTTCTGAGAAGCCTCTAGAACAGGAGCCAATGCTTGCTGCTAGGGTTACAATTGAGGATGGACTTTGTCTTATCCTGGATGTGGATGATATCGATCGTTTTTTACAATTCAATCAGCTCCAAGATGGTGGAACCCAGTTGAGGCGTAGGCGTCAGGGCTTGCTAGAAGGGCTCGCGGCATCTCTACAATTGGTTGATCCACTTGGGAAAAATGACCACACAGATGGGCTTGCTCTCAAGGATGATCTTGTGTTCCTGAGGTTAGTCTCTCTACCCAAGGGCCGAAAGCTTCTTGTCAAGTACCTACGGCTTCTTTTTCCAGGTGGTGAGCTCATGCGAATAGTCTGTATGGCCATCTTCCGCCATTTAAGGTTCTTGTTTGGTATCCTCCCTTCTGATCCAAGGGCTGCAGAAACTACAAATAATATCGCTAGGGTTGTTTCATCATGTGTTCGAGATATGGACCTTGGTGCACTTAGTGCTTGTCTAGCAGCAGTGGTTTGTTCCTCGGAGCAACCCCCGCTTCGTCCCATTGGAAGCTCTGCAGGAGATGGTGCTTCCCTTATTCTGAATGCTGTTCTTGATAGGGCAACTGAACTCTTAACTGATCCTAATGCTGCTAGCAACTACAATATGACTAATCGGGCACTTTGGCAGGCCTCCTTTGATCAATTCTTTGGCCTTCTGACCAAGTATTGTGTAAACAAGTATGATACTATAATGCAGTCACTGCTAATGCAGGCCCCCACGAATATGGCTGTTATTGGCTCAGATGCAGCCAGAGCTATTAGTCGTGAAATGCCAGTTGAGCTGCTGCGTGCGAGTCTTCCTCACACCGATGATCACCAGAGACAGTTGCTCTTAGATTTCACGCAGCGGTCCATGCCTGTGGGAGGATCTAACAATCACGATGGGGGAAATGGCGCCCACATAAATTCAGAGTCTGTGCTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000290 GO:0000932 GO:0000956 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0033962 GO:0034622 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PAT1

Protein Analysis

780

Amino Acids

86.67

Weight (kDa)

6.99

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79090 AT1G79090 AT1G79090
fragaria_vesca	FvH4_3g15840 FvH4_3g15840
malus_domestica	MD05G1219500.v1.1 MD10G1201900.v1.1
prunus_persica	Prupe.4G140400_v2.0.a1
pyrus_communis	pycom05g20090 pycom10g17270
rosa_chinensis	RchiOBHm_Chr5g0026641
rosa_laevigata	RLG00000032942
rosa_multiflora	Rmu_sc0004490.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052830
rosa_rugosa	Rorug05G0094500
rosa_samantha	Rh5AG188000 Rh5BG184400 Rh5CG204300 Rh5DG186700
rosa_wichuraiana	Rw5G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	442, 2309
AccI	GTMKAC	2 cut(s)	988, 1099
AccII	CGCG	1 cut(s)	1562
AciI	CCGC	5 cut(s)	815, 1562, 1747, 1907, 2263
AclWI	GGATC	8 cut(s)	195, 208, 634, 1239, 1577, 1778, 1988, 2290
AcoI	YGGCCR	2 cut(s)	1052, 1737
AcsI	RAATTY	4 cut(s)	56, 643, 1354, 2320
AcuI	CTGAAG	1 cut(s)	294
AcyI	GRCGYC	2 cut(s)	1537, 2310
AdeI	CACNNNGTG	1 cut(s)	1865
AfaI	GTAC	2 cut(s)	356, 1688
AfiI	CCNNNNNNNGG	6 cut(s)	476, 479, 557, 1468, 1527, 2279
AgsI	TTSAA	8 cut(s)	143, 151, 290, 605, 929, 1314, 1340, 1498
AhdI	GACNNNNNGTC	1 cut(s)	663
AhlI	ACTAGT	1 cut(s)	44
AjnI	CCWGG	3 cut(s)	475, 1461, 1705
Alw21I	GWGCWC	3 cut(s)	179, 1719, 1861
Alw26I	GTCTC	4 cut(s)	109, 879, 1657, 2230
Alw44I	GTGCAC	1 cut(s)	1857
AlwI	GGATC	8 cut(s)	195, 208, 634, 1239, 1577, 1778, 1988, 2290
AlwNI	CAGNNNCTG	2 cut(s)	2116, 2330
Ama87I	CYCGRG	1 cut(s)	1242
AoxI	GGCC	9 cut(s)	517, 699, 1052, 1322, 1666, 1737, 2043, 2065, 2127
ApaLI	GTGCAC	1 cut(s)	1857
ApoI	RAATTY	4 cut(s)	56, 643, 1354, 2320
Asp700I	GAANNNNTTC	4 cut(s)	285, 364, 435, 565
AspLEI	GCGC	1 cut(s)	2312
AspS9I	GGNCC	9 cut(s)	314, 548, 699, 1065, 1300, 1666, 1849, 2128, 2265
AsuC2I	CCSGG	2 cut(s)	663, 1368
AsuHPI	GGTGA	5 cut(s)	203, 492, 561, 1724, 2222
AsuII	TTCGAA	1 cut(s)	1105
AsuNHI	GCTAGC	1 cut(s)	2006
AvaI	CYCGRG	1 cut(s)	1242
AvaII	GGWCC	6 cut(s)	314, 548, 1065, 1300, 1849, 2265
AxyI	CCTNAGG	2 cut(s)	552, 1643
BaeGI	GKGCMC	3 cut(s)	1249, 1861, 2035
BalI	TGGCCA	2 cut(s)	1054, 1739
BamHI	GGATCC	1 cut(s)	200
BanI	GGYRCC	2 cut(s)	442, 2309
BanII	GRGCYC	3 cut(s)	381, 1560, 1719
BarI	GAAGNNNNNNTAC	2 cut(s)	1762, 1794
BauI	CACGAG	1 cut(s)	1248
BbsI	GAAGAC	3 cut(s)	300, 659, 2204
Bbv12I	GWGCWC	3 cut(s)	179, 1719, 1861
BceAI	ACGGC	1 cut(s)	1709
BciT130I	CCWGG	3 cut(s)	477, 1463, 1707
BciVI	GTATCC	1 cut(s)	1781
BclI	TGATCA	2 cut(s)	2053, 2227
BcnI	CCSGG	2 cut(s)	663, 1368
BcoDI	GTCTC	4 cut(s)	109, 879, 1657, 2230
BcuI	ACTAGT	1 cut(s)	44
BfmI	CTRYAG	3 cut(s)	336, 1794, 1929
BfoI	RGCGCY	1 cut(s)	2313
BfuI	GTATCC	1 cut(s)	1781
BglII	AGATCT	1 cut(s)	485
Bme1390I	CCNGG	5 cut(s)	477, 663, 1368, 1463, 1707
Bme18I	GGWCC	6 cut(s)	314, 548, 1065, 1300, 1849, 2265
BmeRI	GACNNNNNGTC	1 cut(s)	663
BmeT110I	CYCGRG	1 cut(s)	1242
BmgT120I	GGNCC	9 cut(s)	314, 548, 699, 1065, 1300, 1666, 1849, 2128, 2265
BmiI	GGNNCC	9 cut(s)	202, 444, 1301, 1302, 1347, 1413, 1519, 2130, 2311
BmrFI	CCNGG	5 cut(s)	477, 663, 1368, 1463, 1707
BmrI	ACTGGG	2 cut(s)	621, 1516
BmsI	GCATC	8 cut(s)	106, 265, 786, 808, 826, 1276, 1574, 2149
BmtI	GCTAGC	1 cut(s)	2010
BmuI	ACTGGG	2 cut(s)	621, 1516
BpiI	GAAGAC	3 cut(s)	300, 659, 2204
BplI	GAGNNNNNCTC	2 cut(s)	2200, 2232
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	1105
BpuEI	CTTGAG	1 cut(s)	1607
BpuMI	CCSGG	2 cut(s)	663, 1368
Bsa29I	ATCGAT	1 cut(s)	1479
BsaBI	GATNNNNATC	1 cut(s)	1479
BsaHI	GRCGYC	2 cut(s)	1537, 2310
BsaJI	CCNNGG	5 cut(s)	1241, 1662, 1787, 1852, 1893
Bsc4I	CCNNNNNNNGG	6 cut(s)	476, 479, 557, 1468, 1527, 2279
Bse1I	ACTGG	7 cut(s)	184, 257, 616, 836, 1162, 1522, 2189
Bse21I	CCTNAGG	2 cut(s)	552, 1643
Bse3DI	GCAATG	3 cut(s)	873, 939, 1138
Bse8I	GATNNNNATC	1 cut(s)	1479
BseBI	CCWGG	3 cut(s)	477, 1463, 1707
BseCI	ATCGAT	1 cut(s)	1479
BseDI	CCNNGG	5 cut(s)	1241, 1662, 1787, 1852, 1893
BseGI	GGATG	9 cut(s)	163, 727, 817, 832, 902, 1450, 1471, 1477, 1633
BseJI	GATNNNNATC	1 cut(s)	1479
BseLI	CCNNNNNNNGG	6 cut(s)	476, 479, 557, 1468, 1527, 2279
BseMI	GCAATG	3 cut(s)	873, 939, 1138
BseMII	CTCAG	7 cut(s)	366, 503, 566, 992, 1383, 1634, 2169
BseNI	ACTGG	7 cut(s)	184, 257, 616, 836, 1162, 1522, 2189
BseRI	GAGGAG	1 cut(s)	1230
BseSI	GKGCMC	3 cut(s)	1249, 1861, 2035
BseYI	CCCAGC	1 cut(s)	1187
BsgI	GTGCAG	2 cut(s)	254, 812
Bsh1236I	CGCG	1 cut(s)	1562
Bsh1285I	CGRYCG	1 cut(s)	1483
BshFI	GGCC	9 cut(s)	519, 701, 1054, 1324, 1668, 1739, 2045, 2067, 2129
BshNI	GGYRCC	2 cut(s)	442, 2309
BshVI	ATCGAT	1 cut(s)	1479
BsiEI	CGRYCG	1 cut(s)	1483
BsiHKAI	GWGCWC	3 cut(s)	179, 1719, 1861
BsiHKCI	CYCGRG	1 cut(s)	1242
BsiSI	CCGG	2 cut(s)	662, 1367
BslFI	GGGAC	3 cut(s)	669, 1286, 1899
BslI	CCNNNNNNNGG	6 cut(s)	476, 479, 557, 1468, 1527, 2279
BsmAI	GTCTC	4 cut(s)	109, 879, 1657, 2230
BsmFI	GGGAC	3 cut(s)	669, 1286, 1899
BsmI	GAATGC	3 cut(s)	285, 1113, 1963
BsnI	GGCC	9 cut(s)	519, 701, 1054, 1324, 1668, 1739, 2045, 2067, 2129
BsoBI	CYCGRG	1 cut(s)	1242
Bsp119I	TTCGAA	1 cut(s)	1105
Bsp1286I	GDGCHC	7 cut(s)	179, 381, 1249, 1560, 1719, 1861, 2035
Bsp1407I	TGTACA	1 cut(s)	354
BspACI	CCGC	5 cut(s)	815, 1562, 1747, 1907, 2263
BspANI	GGCC	9 cut(s)	519, 701, 1054, 1324, 1668, 1739, 2045, 2067, 2129
BspCNI	CTCAG	7 cut(s)	367, 502, 565, 991, 1384, 1635, 2168
BspDI	ATCGAT	1 cut(s)	1479
BspFNI	CGCG	1 cut(s)	1562
BspLI	GGNNCC	9 cut(s)	202, 444, 1301, 1302, 1347, 1413, 1519, 2130, 2311
BspMAI	CTGCAG	2 cut(s)	1798, 1933
BspOI	GCTAGC	1 cut(s)	2010
BspPI	GGATC	8 cut(s)	195, 208, 634, 1239, 1577, 1778, 1988, 2290
BspT104I	TTCGAA	1 cut(s)	1105
BspT107I	GGYRCC	2 cut(s)	442, 2309
BsrDI	GCAATG	3 cut(s)	873, 939, 1138
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	7 cut(s)	184, 257, 616, 836, 1162, 1522, 2189
BssECI	CCNNGG	5 cut(s)	1241, 1662, 1787, 1852, 1893
BssNAI	GTATAC	1 cut(s)	1100
BssNI	GRCGYC	2 cut(s)	1537, 2310
BssSI	CACGAG	1 cut(s)	1248
BssT1I	CCWWGG	3 cut(s)	1662, 1787, 1852
Bst1107I	GTATAC	1 cut(s)	1100
Bst2BI	CACGAG	1 cut(s)	1248
Bst2UI	CCWGG	3 cut(s)	477, 1463, 1707
Bst4CI	ACNGT	5 cut(s)	74, 318, 762, 792, 2241
Bst6I	CTCTTC	2 cut(s)	1315, 1338
BstACI	GRCGYC	2 cut(s)	1537, 2310
BstAPI	GCANNNNNTGC	2 cut(s)	1865, 2116
BstAUI	TGTACA	1 cut(s)	354
BstBI	TTCGAA	1 cut(s)	1105
BstEII	GGTNACC	1 cut(s)	615
BstENI	CCTNNNNNAGG	1 cut(s)	2277
BstF5I	GGATG	9 cut(s)	163, 727, 817, 832, 902, 1450, 1471, 1477, 1633
BstFNI	CGCG	1 cut(s)	1562
BstH2I	RGCGCY	1 cut(s)	2313
BstHHI	GCGC	1 cut(s)	2312
BstMAI	GTCTC	4 cut(s)	109, 879, 1657, 2230
BstMCI	CGRYCG	1 cut(s)	1483
BstNI	CCWGG	3 cut(s)	477, 1463, 1707
BstNSI	RCATGY	1 cut(s)	1271
BstPI	GGTNACC	1 cut(s)	615
BstSCI	CCNGG	5 cut(s)	475, 661, 1366, 1461, 1705
BstSFI	CTRYAG	3 cut(s)	336, 1794, 1929
BstSLI	GKGCMC	3 cut(s)	1249, 1861, 2035
BstUI	CGCG	1 cut(s)	1562
BstV2I	GAAGAC	3 cut(s)	300, 659, 2204
BstX2I	RGATCY	4 cut(s)	200, 485, 1231, 2282
BstXI	CCANNNNNNTGG	4 cut(s)	1514, 1610, 2140, 2275
BstYI	RGATCY	4 cut(s)	200, 485, 1231, 2282
BstZ17I	GTATAC	1 cut(s)	1100
Bsu15I	ATCGAT	1 cut(s)	1479
Bsu36I	CCTNAGG	2 cut(s)	552, 1643
BsuI	GTATCC	1 cut(s)	1781
BsuRI	GGCC	9 cut(s)	519, 701, 1054, 1324, 1668, 1739, 2045, 2067, 2129
BsuTUI	ATCGAT	1 cut(s)	1479
BtsCI	GGATG	9 cut(s)	163, 727, 817, 832, 902, 1450, 1471, 1477, 1633
BtsI	GCAGTG	2 cut(s)	1887, 2114
BtsIMutI	CAGTG	4 cut(s)	177, 1374, 1887, 2114
CaiI	CAGNNNCTG	2 cut(s)	2116, 2330
CfoI	GCGC	1 cut(s)	2312
Cfr13I	GGNCC	9 cut(s)	314, 548, 699, 1065, 1300, 1666, 1849, 2128, 2265
ClaI	ATCGAT	1 cut(s)	1479
CseI	GACGC	1 cut(s)	1526
Csp6I	GTAC	2 cut(s)	355, 1687
CspCI	CAANNNNNGTGG	6 cut(s)	691, 726, 1024, 1059, 1148, 1183
CviAII	CATG	7 cut(s)	523, 623, 1013, 1268, 1720, 1833, 2269
CviQI	GTAC	2 cut(s)	355, 1687
DinI	GGCGCC	1 cut(s)	2311
DraI	TTTAAA	1 cut(s)	741
DraIII	CACNNNGTG	1 cut(s)	1865
DriI	GACNNNNNGTC	1 cut(s)	663
EaeI	YGGCCR	2 cut(s)	1052, 1737
Eam1104I	CTCTTC	2 cut(s)	1315, 1338
Eam1105I	GACNNNNNGTC	1 cut(s)	663
EarI	CTCTTC	2 cut(s)	1315, 1338
EciI	GGCGGA	1 cut(s)	1736
Ecl136II	GAGCTC	1 cut(s)	1717
Eco130I	CCWWGG	3 cut(s)	1662, 1787, 1852
Eco147I	AGGCCT	2 cut(s)	1324, 2045
Eco24I	GRGCYC	3 cut(s)	381, 1560, 1719
Eco32I	GATATC	1 cut(s)	1477
Eco47I	GGWCC	6 cut(s)	314, 548, 1065, 1300, 1849, 2265
Eco53kI	GAGCTC	1 cut(s)	1717
Eco57I	CTGAAG	1 cut(s)	294
Eco81I	CCTNAGG	2 cut(s)	552, 1643
Eco88I	CYCGRG	1 cut(s)	1242
Eco91I	GGTNACC	1 cut(s)	615
EcoICRI	GAGCTC	1 cut(s)	1717
EcoNI	CCTNNNNNAGG	1 cut(s)	2277
EcoO109I	RGGNCCY	2 cut(s)	1300, 2128
EcoO65I	GGTNACC	1 cut(s)	615
EcoRII	CCWGG	3 cut(s)	475, 1461, 1705
EcoRV	GATATC	1 cut(s)	1477
EcoT14I	CCWWGG	3 cut(s)	1662, 1787, 1852
EcoT22I	ATGCAT	1 cut(s)	801
EcoT38I	GRGCYC	3 cut(s)	381, 1560, 1719
EgeI	GGCGCC	1 cut(s)	2311
EheI	GGCGCC	1 cut(s)	2311
ErhI	CCWWGG	3 cut(s)	1662, 1787, 1852
FaeI	CATG	7 cut(s)	526, 626, 1016, 1271, 1723, 1836, 2272
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FaqI	GGGAC	3 cut(s)	669, 1286, 1899
FatI	CATG	7 cut(s)	522, 622, 1012, 1267, 1719, 1832, 2268
FauI	CCCGC	1 cut(s)	1914
FauNDI	CATATG	2 cut(s)	858, 1141
FbaI	TGATCA	2 cut(s)	2053, 2227
FblI	GTMKAC	2 cut(s)	988, 1099
FokI	GGATG	9 cut(s)	170, 714, 804, 819, 889, 1457, 1478, 1484, 1640
FriOI	GRGCYC	3 cut(s)	381, 1560, 1719
GlaI	GCGC	1 cut(s)	2311
GsaI	CCCAGC	1 cut(s)	1191
GsuI	CTGGAG	1 cut(s)	459
HaeII	RGCGCY	1 cut(s)	2313
HaeIII	GGCC	9 cut(s)	519, 701, 1054, 1324, 1668, 1739, 2045, 2067, 2129
HapII	CCGG	2 cut(s)	662, 1367
HgaI	GACGC	1 cut(s)	1526
HhaI	GCGC	1 cut(s)	2312
Hin1I	GRCGYC	2 cut(s)	1537, 2310
Hin1II	CATG	7 cut(s)	526, 626, 1016, 1271, 1723, 1836, 2272
Hin6I	GCGC	1 cut(s)	2310
HinP1I	GCGC	1 cut(s)	2310
HindIII	AAGCTT	1 cut(s)	1673
HinfI	GANTC	3 cut(s)	658, 2209, 2327
HpaII	CCGG	2 cut(s)	662, 1367
HphI	GGTGA	5 cut(s)	203, 492, 561, 1724, 2222
Hpy166II	GTNNAC	6 cut(s)	500, 548, 989, 1100, 1859, 2089
Hpy8I	GTNNAC	6 cut(s)	500, 548, 989, 1100, 1859, 2089
HpyAV	CCTTC	5 cut(s)	905, 1378, 1547, 1788, 2078
HpyCH4III	ACNGT	5 cut(s)	74, 318, 762, 792, 2241
Hsp92I	GRCGYC	2 cut(s)	1537, 2310
Hsp92II	CATG	7 cut(s)	526, 626, 1016, 1271, 1723, 1836, 2272
HspAI	GCGC	1 cut(s)	2310
KasI	GGCGCC	1 cut(s)	2309
KflI	GGGWCCC	1 cut(s)	1300
Ksp22I	TGATCA	2 cut(s)	2053, 2227
LmnI	GCTCC	5 cut(s)	174, 1345, 1411, 1509, 1897
LweI	GCATC	8 cut(s)	106, 265, 786, 808, 826, 1276, 1574, 2149
MaeIII	GTNAC	4 cut(s)	68, 615, 1432, 2112
MfeI	CAATTG	2 cut(s)	1437, 1574
MflI	RGATCY	4 cut(s)	200, 485, 1231, 2282
MhlI	GDGCHC	7 cut(s)	179, 381, 1249, 1560, 1719, 1861, 2035
MlsI	TGGCCA	2 cut(s)	1054, 1739
MluNI	TGGCCA	2 cut(s)	1054, 1739
Mly113I	GGCGCC	1 cut(s)	2310
MlyI	GAGTC	3 cut(s)	652, 2218, 2336
MmeI	TCCRAC	1 cut(s)	1241
Mox20I	TGGCCA	2 cut(s)	1054, 1739
Mph1103I	ATGCAT	1 cut(s)	801
MroXI	GAANNNNTTC	4 cut(s)	285, 364, 435, 565
MscI	TGGCCA	2 cut(s)	1054, 1739
MseI	TTAA	8 cut(s)	60, 134, 675, 740, 885, 1226, 1754, 1988
MslI	CAYNNNNRTG	7 cut(s)	636, 774, 1131, 1608, 2138, 2223, 2273
Msp20I	TGGCCA	2 cut(s)	1054, 1739
MspA1I	CMGCKG	3 cut(s)	388, 1082, 2263
MspI	CCGG	2 cut(s)	662, 1367
MspR9I	CCNGG	5 cut(s)	477, 663, 1368, 1463, 1707
MunI	CAATTG	2 cut(s)	1437, 1574
Mva1269I	GAATGC	3 cut(s)	285, 1113, 1963
MvaI	CCWGG	3 cut(s)	477, 1463, 1707
MvnI	CGCG	1 cut(s)	1562
NarI	GGCGCC	1 cut(s)	2310
NciI	CCSGG	2 cut(s)	663, 1368
NdeI	CATATG	2 cut(s)	858, 1141
NheI	GCTAGC	1 cut(s)	2006
NlaIII	CATG	7 cut(s)	526, 626, 1016, 1271, 1723, 1836, 2272
NlaIV	GGNNCC	9 cut(s)	202, 444, 1301, 1302, 1347, 1413, 1519, 2130, 2311
NmuCI	GTSAC	1 cut(s)	2112
NsiI	ATGCAT	1 cut(s)	801
NspI	RCATGY	1 cut(s)	1271
NspV	TTCGAA	1 cut(s)	1105
PceI	AGGCCT	2 cut(s)	1324, 2045
PctI	GAATGC	3 cut(s)	285, 1113, 1963
PdmI	GAANNNNTTC	4 cut(s)	285, 364, 435, 565
PflFI	GACNNNGTC	1 cut(s)	1452
PfoI	TCCNGGA	1 cut(s)	1461
Ple19I	CGATCG	1 cut(s)	1483
PleI	GAGTC	3 cut(s)	652, 2217, 2335
PluTI	GGCGCC	1 cut(s)	2313
PpsI	GAGTC	3 cut(s)	652, 2217, 2335
PpuMI	RGGWCCY	1 cut(s)	1300
Psp124BI	GAGCTC	1 cut(s)	1719
Psp5II	RGGWCCY	1 cut(s)	1300
Psp6I	CCWGG	3 cut(s)	475, 1461, 1705
PspEI	GGTNACC	1 cut(s)	615
PspFI	CCCAGC	1 cut(s)	1187
PspGI	CCWGG	3 cut(s)	475, 1461, 1705
PspN4I	GGNNCC	9 cut(s)	202, 444, 1301, 1302, 1347, 1413, 1519, 2130, 2311
PspPI	GGNCC	9 cut(s)	314, 548, 699, 1065, 1300, 1666, 1849, 2128, 2265
PspPPI	RGGWCCY	1 cut(s)	1300
PstI	CTGCAG	2 cut(s)	1798, 1933
PstNI	CAGNNNCTG	2 cut(s)	2116, 2330
PsuI	RGATCY	4 cut(s)	200, 485, 1231, 2282
PsyI	GACNNNGTC	1 cut(s)	1452
PvuI	CGATCG	1 cut(s)	1483
PvuII	CAGCTG	2 cut(s)	388, 1082
RsaI	GTAC	2 cut(s)	356, 1688
RsaNI	GTAC	2 cut(s)	355, 1687
RseI	CAYNNNNRTG	7 cut(s)	636, 774, 1131, 1608, 2138, 2223, 2273
SacI	GAGCTC	1 cut(s)	1719
SaqAI	TTAA	8 cut(s)	60, 134, 675, 740, 885, 1226, 1754, 1988
Sau96I	GGNCC	9 cut(s)	314, 548, 699, 1065, 1300, 1666, 1849, 2128, 2265
SchI	GAGTC	3 cut(s)	652, 2218, 2336
ScrFI	CCNGG	5 cut(s)	477, 663, 1368, 1463, 1707
SduI	GDGCHC	7 cut(s)	179, 381, 1249, 1560, 1719, 1861, 2035
SfaNI	GCATC	8 cut(s)	106, 265, 786, 808, 826, 1276, 1574, 2149
SfcI	CTRYAG	3 cut(s)	336, 1794, 1929
SfoI	GGCGCC	1 cut(s)	2311
SfuI	TTCGAA	1 cut(s)	1105
SinI	GGWCC	6 cut(s)	314, 548, 1065, 1300, 1849, 2265
SmiI	ATTTAAAT	1 cut(s)	741
SmiMI	CAYNNNNRTG	7 cut(s)	636, 774, 1131, 1608, 2138, 2223, 2273
SmlI	CTYRAG	1 cut(s)	1622
SmoI	CTYRAG	1 cut(s)	1622
SpeI	ACTAGT	1 cut(s)	44
SseBI	AGGCCT	2 cut(s)	1324, 2045
SsiI	CCGC	5 cut(s)	815, 1562, 1747, 1907, 2263
SspDI	GGCGCC	1 cut(s)	2309
SspI	AATATT	3 cut(s)	270, 419, 529
SstI	GAGCTC	1 cut(s)	1719
StuI	AGGCCT	2 cut(s)	1324, 2045
StyD4I	CCNGG	5 cut(s)	475, 661, 1366, 1461, 1705
StyI	CCWWGG	3 cut(s)	1662, 1787, 1852
SwaI	ATTTAAAT	1 cut(s)	741
TaaI	ACNGT	5 cut(s)	74, 318, 762, 792, 2241
TaqI	TCGA	3 cut(s)	1105, 1479, 1840
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	2 cut(s)	817, 1565
Tru1I	TTAA	8 cut(s)	60, 134, 675, 740, 885, 1226, 1754, 1988
Tru9I	TTAA	8 cut(s)	60, 134, 675, 740, 885, 1226, 1754, 1988
TscAI	CASTG	4 cut(s)	184, 1381, 1887, 2121
TseFI	GTSAC	1 cut(s)	2112
Tsp45I	GTSAC	1 cut(s)	2112
TspRI	CASTG	4 cut(s)	184, 1381, 1887, 2121
Tth111I	GACNNNGTC	1 cut(s)	1452
VneI	GTGCAC	1 cut(s)	1857
VpaK11BI	GGWCC	6 cut(s)	314, 548, 1065, 1300, 1849, 2265
XagI	CCTNNNNNAGG	1 cut(s)	2277
XapI	RAATTY	4 cut(s)	56, 643, 1354, 2320
XbaI	TCTAGA	1 cut(s)	1402
XceI	RCATGY	1 cut(s)	1271
XmiI	GTMKAC	2 cut(s)	988, 1099
XmnI	GAANNNNTTC	4 cut(s)	285, 364, 435, 565
Zsp2I	ATGCAT	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.