Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011339

Physical Location & Seq

Genomic Coordinates Forward (+)

20758195 .. 20765988

Gene Structure 7794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG186700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2340 bp

ATGGTAGAAATGTGGTGGTATATTTTGATATTTGTTCAGAACACTAGTGCAAGAAAATTTAAGTGGTGTAACTGTTTGTTCTTTTCTTATTGGCAGGGTGGTGTCTCTCTATCTGATGCTGATGATCTGTCTTTAACTTTTGAAAAGTTGAACAAGGATGTAAATGGAACTAGGAGCACTGGAATAATTGGTGATAGAGGATCCAGAGAAAGTTCATCTGCTGCTGAATGGGTGCAGGAAAGTTTCCCTAACTGGATTGATGAAGAAATATTTGATGCTGAAAGCATTCAAGATGGGAAAAGATGGTCTTCAGGACCGTTTTCTTCTATTCGTCCTACAGAAGCAAAACCTTTGTACAGAACTTCTTCATATCCTGATCCCCCACAGCTGCCACAGCAGCAGCAACAACATCAATATTTTTCTAGCGAACCAATTCTGGTGCCAAAATCTTCTTTTACTTCATATCCACCTCCAGGTGGCAGATCTCAGCAGGGTTCACCTAACCACCAATCAGGCCACATGAATATTCCTTATGCTGCTGGTGGACCTCAGGGGGGAATATCTTCACCAAACCTTTCTCCCTACTCTAACTCTCCACTTCAAATGACTGGGTTACCTCACGGATCACATTTTGGTGGAAATTTGCCTCATCTGACTCCTGGTCTTCCTGTTAATACTCGTCCCCTTACTCAATGGGCCAACCAAAGTGGCTCATTTGGAGATCATCCTAGTCATTTAAATAATCTGTTGCAGCAACAGTTATCTCATCAGAATGGTTTGCCTCCACAGTTGATGCATCAGCCACAGCAGCCACATCCTAGACTGCACCATCCAGTTCAGCAACCATTCAACCATATGTCAGCAATGCAGTCTCAACTATTTAACCCCCACCTTCCTCCATCCCCACCCTTGATGAACAAGTTTGAAGCAATGTTCGGTATGAGTGATATTAGAGATGAAAGGTCAAGATTAGCTCAGAAAGGTAGACAGAATATGCGTTTTTCTCAACATGGCTTTGATACAGGTAGCTACAAAAGTGGTGGTGGTTGGCCATCATTCAGGTCCAAGTATATGACAGCTGATGAAATTGAGGGTATACTTCGAATGCAGCTTGCTGCAACACACAGCAATGACCCATATGTAGATGATTATTACCACCAGTATTGCCTTGCAAGAAAATCTACTGGGGCGAAGTTGAAACATCATTTCTGTCCAACTCATTTAAGGGATCTTCCTCCTCGGGCACGAGCTAATGCTGAACCACATGCTTTTCTCCAAGTTGATGCTCTTGGGAGGGTCCCATTCTCTTCAATACGCAGGCCTCGCCCTCTTCTTGAAGTGGAGCCACCAAATTCATCTAGTCCGGGCAACACTGAACAGAAGGTTTCTGAGAAGCCTCTAGAACAGGAGCCAATGCTTGCTGCTAGGGTTACAATTGAGGATGGACTTTGTCTTCTCCTGGATGTGGATGATATCGATCGTTTTTTACAATTCAATCAGCTCCAAGATGGTGGAACCCAGTTGAGGCGTAGGCGTCAGGGCTTGCTAGAAGGGCTCGCAGCATCTCTACAATTGGTTGATCCACTTGGGAAAAATGACCACACAGATGGGCTGGCTCTCAAGGATGATCTTGTGTTCCTGAGGTTAGTCTCTCTACCCAAGGGCCGAAAGCTTCTTGTCAAGTACCTACGGCTTCTTTTTCCAGGTGGTGAGCTCATGCGAATAGTCTGTATGGCCATCTTCCGCCATTTAAGGTTCTTGTTTGGTATCCTCCCTTCTGATCCAAGGGCTGCAGAAACTACAAATAATATCGCTAGGGTTGTTTCATCATGTGTTCGAGGTATGGACCTTGGTGCACTTAGTGCTTGTCTGGCAGCAGTGGTTTGTTCCTCGGAGCAACCCCCGCTTCGTCCCATTGGAAGCCCTGCAGGAGATGGTGCTTCCCTTATTCTGAATGCTGTTCTTGATAGGGCAACTGAACTCTTAACTGATCCTAATGCTGCTAGCAACTACAATATGACTAATCGGGCACTTTGGCAGGCCTCCTTTGATCAATTCTTTGGCCTTCTGACCAAGTATTGTGTAAACAAGTATGATACTATAATGCAGTCACTGTTAATGCAGGCCCCCACGAATATGGCTGTTATTGGCTCAGATGCAGCCAGAGCTATTAGTCGTGAAATGCCAGTTGAGCTGCTGCGTGCGAGTCTTCCTCACACCGATGATCACCAGAGACAGTTGCTCTTAGATTTCACGCAGCGGTCCATGCCTGTGGGAGGATCTAACAATCACGATGGGGGAAATGGTGCCCACATAAATTCAGAGTCTGTGCTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000290 GO:0000932 GO:0000956 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0033962 GO:0034622 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PAT1

Protein Analysis

779

Amino Acids

86.54

Weight (kDa)

7.17

Isoelectric Point (pI)

58.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79090 AT1G79090 AT1G79090
fragaria_vesca	FvH4_3g15840 FvH4_3g15840
malus_domestica	MD05G1219500.v1.1 MD10G1201900.v1.1
prunus_persica	Prupe.4G140400_v2.0.a1
pyrus_communis	pycom05g20090 pycom10g17270
rosa_chinensis	RchiOBHm_Chr5g0026641
rosa_laevigata	RLG00000032942
rosa_multiflora	Rmu_sc0004490.1_g000005
rosa_roxburghii	Rroxscaffold_1G00052830
rosa_rugosa	Rorug05G0094500
rosa_samantha	Rh5AG188000 Rh5BG184400 Rh5CG204300 Rh5DG186700
rosa_wichuraiana	Rw5G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	439, 2306
AccI	GTMKAC	2 cut(s)	985, 1096
AciI	CCGC	3 cut(s)	1744, 1904, 2260
AclWI	GGATC	9 cut(s)	195, 208, 371, 631, 1236, 1574, 1775, 1985, 2287
AcoI	YGGCCR	2 cut(s)	1049, 1734
AcsI	RAATTY	4 cut(s)	56, 640, 1351, 2317
AcuI	CTGAAG	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	1534
AdeI	CACNNNGTG	1 cut(s)	1862
AfaI	GTAC	2 cut(s)	356, 1685
AfiI	CCNNNNNNNGG	6 cut(s)	473, 476, 554, 1465, 1524, 2276
AhdI	GACNNNNNGTC	1 cut(s)	660
AhlI	ACTAGT	1 cut(s)	44
AjnI	CCWGG	4 cut(s)	472, 658, 1458, 1702
Alw21I	GWGCWC	3 cut(s)	179, 1716, 1858
Alw26I	GTCTC	4 cut(s)	109, 876, 1654, 2227
Alw44I	GTGCAC	1 cut(s)	1854
AlwI	GGATC	9 cut(s)	195, 208, 371, 631, 1236, 1574, 1775, 1985, 2287
AlwNI	CAGNNNCTG	2 cut(s)	2113, 2327
Ama87I	CYCGRG	1 cut(s)	1239
AoxI	GGCC	9 cut(s)	514, 696, 1049, 1319, 1663, 1734, 2040, 2062, 2124
ApaLI	GTGCAC	1 cut(s)	1854
ApoI	RAATTY	4 cut(s)	56, 640, 1351, 2317
Asp700I	GAANNNNTTC	4 cut(s)	285, 364, 432, 562
AspS9I	GGNCC	9 cut(s)	314, 545, 696, 1062, 1297, 1663, 1846, 2125, 2262
AsuC2I	CCSGG	1 cut(s)	1365
AsuHPI	GGTGA	5 cut(s)	203, 489, 558, 1721, 2219
AsuII	TTCGAA	1 cut(s)	1102
AsuNHI	GCTAGC	1 cut(s)	2003
AvaI	CYCGRG	1 cut(s)	1239
AvaII	GGWCC	6 cut(s)	314, 545, 1062, 1297, 1846, 2262
AxyI	CCTNAGG	2 cut(s)	549, 1640
BaeGI	GKGCMC	4 cut(s)	1246, 1858, 2032, 2311
BalI	TGGCCA	2 cut(s)	1051, 1736
BamHI	GGATCC	1 cut(s)	200
BanI	GGYRCC	2 cut(s)	439, 2306
BanII	GRGCYC	2 cut(s)	1557, 1716
BarI	GAAGNNNNNNTAC	2 cut(s)	1759, 1791
BauI	CACGAG	1 cut(s)	1245
BbsI	GAAGAC	4 cut(s)	300, 656, 1445, 2201
Bbv12I	GWGCWC	3 cut(s)	179, 1716, 1858
BceAI	ACGGC	1 cut(s)	1706
BciT130I	CCWGG	4 cut(s)	474, 660, 1460, 1704
BciVI	GTATCC	1 cut(s)	1778
BclI	TGATCA	2 cut(s)	2050, 2224
BcnI	CCSGG	1 cut(s)	1365
BcoDI	GTCTC	4 cut(s)	109, 876, 1654, 2227
BcuI	ACTAGT	1 cut(s)	44
BfmI	CTRYAG	3 cut(s)	336, 1791, 1926
BfuI	GTATCC	1 cut(s)	1778
BglII	AGATCT	1 cut(s)	482
Bme1390I	CCNGG	5 cut(s)	474, 660, 1365, 1460, 1704
Bme18I	GGWCC	6 cut(s)	314, 545, 1062, 1297, 1846, 2262
BmeRI	GACNNNNNGTC	1 cut(s)	660
BmeT110I	CYCGRG	1 cut(s)	1239
BmgT120I	GGNCC	9 cut(s)	314, 545, 696, 1062, 1297, 1663, 1846, 2125, 2262
BmiI	GGNNCC	9 cut(s)	202, 441, 1298, 1299, 1344, 1410, 1516, 2127, 2308
BmrFI	CCNGG	5 cut(s)	474, 660, 1365, 1460, 1704
BmrI	ACTGGG	3 cut(s)	618, 1194, 1513
BmsI	GCATC	7 cut(s)	106, 265, 783, 805, 1273, 1571, 2146
BmtI	GCTAGC	1 cut(s)	2007
BmuI	ACTGGG	3 cut(s)	618, 1194, 1513
BpiI	GAAGAC	4 cut(s)	300, 656, 1445, 2201
BplI	GAGNNNNNCTC	2 cut(s)	2197, 2229
BpmI	CTGGAG	1 cut(s)	456
Bpu14I	TTCGAA	1 cut(s)	1102
BpuEI	CTTGAG	1 cut(s)	1604
BpuMI	CCSGG	1 cut(s)	1365
Bsa29I	ATCGAT	1 cut(s)	1476
BsaBI	GATNNNNATC	1 cut(s)	1476
BsaHI	GRCGYC	1 cut(s)	1534
BsaJI	CCNNGG	5 cut(s)	1238, 1659, 1784, 1849, 1890
Bsc4I	CCNNNNNNNGG	6 cut(s)	473, 476, 554, 1465, 1524, 2276
Bse1I	ACTGG	8 cut(s)	184, 257, 613, 833, 1159, 1189, 1519, 2186
Bse21I	CCTNAGG	2 cut(s)	549, 1640
Bse3DI	GCAATG	3 cut(s)	870, 936, 1135
Bse8I	GATNNNNATC	1 cut(s)	1476
BseBI	CCWGG	4 cut(s)	474, 660, 1460, 1704
BseCI	ATCGAT	1 cut(s)	1476
BseDI	CCNNGG	5 cut(s)	1238, 1659, 1784, 1849, 1890
BseGI	GGATG	9 cut(s)	163, 724, 814, 829, 899, 1447, 1468, 1474, 1630
BseJI	GATNNNNATC	1 cut(s)	1476
BseLI	CCNNNNNNNGG	6 cut(s)	473, 476, 554, 1465, 1524, 2276
BseMI	GCAATG	3 cut(s)	870, 936, 1135
BseMII	CTCAG	6 cut(s)	500, 563, 989, 1380, 1631, 2166
BseNI	ACTGG	8 cut(s)	184, 257, 613, 833, 1159, 1189, 1519, 2186
BseRI	GAGGAG	1 cut(s)	1227
BseSI	GKGCMC	4 cut(s)	1246, 1858, 2032, 2311
BsgI	GTGCAG	2 cut(s)	254, 809
Bsh1285I	CGRYCG	1 cut(s)	1480
BshFI	GGCC	9 cut(s)	516, 698, 1051, 1321, 1665, 1736, 2042, 2064, 2126
BshNI	GGYRCC	2 cut(s)	439, 2306
BshVI	ATCGAT	1 cut(s)	1476
BsiEI	CGRYCG	1 cut(s)	1480
BsiHKAI	GWGCWC	3 cut(s)	179, 1716, 1858
BsiHKCI	CYCGRG	1 cut(s)	1239
BsiSI	CCGG	1 cut(s)	1364
BslFI	GGGAC	3 cut(s)	666, 1283, 1896
BslI	CCNNNNNNNGG	6 cut(s)	473, 476, 554, 1465, 1524, 2276
BsmAI	GTCTC	4 cut(s)	109, 876, 1654, 2227
BsmFI	GGGAC	3 cut(s)	666, 1283, 1896
BsmI	GAATGC	3 cut(s)	285, 1110, 1960
BsnI	GGCC	9 cut(s)	516, 698, 1051, 1321, 1665, 1736, 2042, 2064, 2126
BsoBI	CYCGRG	1 cut(s)	1239
Bsp119I	TTCGAA	1 cut(s)	1102
Bsp1286I	GDGCHC	7 cut(s)	179, 1246, 1557, 1716, 1858, 2032, 2311
Bsp1407I	TGTACA	1 cut(s)	354
BspACI	CCGC	3 cut(s)	1744, 1904, 2260
BspANI	GGCC	9 cut(s)	516, 698, 1051, 1321, 1665, 1736, 2042, 2064, 2126
BspCNI	CTCAG	6 cut(s)	499, 562, 988, 1381, 1632, 2165
BspDI	ATCGAT	1 cut(s)	1476
BspLI	GGNNCC	9 cut(s)	202, 441, 1298, 1299, 1344, 1410, 1516, 2127, 2308
BspMAI	CTGCAG	2 cut(s)	1795, 1930
BspOI	GCTAGC	1 cut(s)	2007
BspPI	GGATC	9 cut(s)	195, 208, 371, 631, 1236, 1574, 1775, 1985, 2287
BspT104I	TTCGAA	1 cut(s)	1102
BspT107I	GGYRCC	2 cut(s)	439, 2306
BsrDI	GCAATG	3 cut(s)	870, 936, 1135
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	8 cut(s)	184, 257, 613, 833, 1159, 1189, 1519, 2186
BssECI	CCNNGG	5 cut(s)	1238, 1659, 1784, 1849, 1890
BssNAI	GTATAC	1 cut(s)	1097
BssNI	GRCGYC	1 cut(s)	1534
BssSI	CACGAG	1 cut(s)	1245
BssT1I	CCWWGG	3 cut(s)	1659, 1784, 1849
Bst1107I	GTATAC	1 cut(s)	1097
Bst2BI	CACGAG	1 cut(s)	1245
Bst2UI	CCWGG	4 cut(s)	474, 660, 1460, 1704
Bst4CI	ACNGT	6 cut(s)	74, 318, 759, 789, 2115, 2238
Bst6I	CTCTTC	2 cut(s)	1312, 1335
BstACI	GRCGYC	1 cut(s)	1534
BstAPI	GCANNNNNTGC	1 cut(s)	1862
BstAUI	TGTACA	1 cut(s)	354
BstBI	TTCGAA	1 cut(s)	1102
BstDEI	CTNAG	9 cut(s)	486, 549, 975, 1389, 1640, 1859, 2152, 2245, 2333
BstEII	GGTNACC	1 cut(s)	612
BstENI	CCTNNNNNAGG	1 cut(s)	2274
BstF5I	GGATG	9 cut(s)	163, 724, 814, 829, 899, 1447, 1468, 1474, 1630
BstMAI	GTCTC	4 cut(s)	109, 876, 1654, 2227
BstMCI	CGRYCG	1 cut(s)	1480
BstNI	CCWGG	4 cut(s)	474, 660, 1460, 1704
BstNSI	RCATGY	1 cut(s)	1268
BstPI	GGTNACC	1 cut(s)	612
BstSCI	CCNGG	5 cut(s)	472, 658, 1363, 1458, 1702
BstSFI	CTRYAG	3 cut(s)	336, 1791, 1926
BstSLI	GKGCMC	4 cut(s)	1246, 1858, 2032, 2311
BstV2I	GAAGAC	4 cut(s)	300, 656, 1445, 2201
BstX2I	RGATCY	4 cut(s)	200, 482, 1228, 2279
BstXI	CCANNNNNNTGG	4 cut(s)	1511, 1607, 2137, 2272
BstYI	RGATCY	4 cut(s)	200, 482, 1228, 2279
BstZ17I	GTATAC	1 cut(s)	1097
Bsu15I	ATCGAT	1 cut(s)	1476
Bsu36I	CCTNAGG	2 cut(s)	549, 1640
BsuI	GTATCC	1 cut(s)	1778
BsuRI	GGCC	9 cut(s)	516, 698, 1051, 1321, 1665, 1736, 2042, 2064, 2126
BsuTUI	ATCGAT	1 cut(s)	1476
BtsCI	GGATG	9 cut(s)	163, 724, 814, 829, 899, 1447, 1468, 1474, 1630
BtsI	GCAGTG	1 cut(s)	1884
BtsIMutI	CAGTG	4 cut(s)	177, 1371, 1884, 2111
CaiI	CAGNNNCTG	2 cut(s)	2113, 2327
Cfr13I	GGNCC	9 cut(s)	314, 545, 696, 1062, 1297, 1663, 1846, 2125, 2262
ClaI	ATCGAT	1 cut(s)	1476
CseI	GACGC	1 cut(s)	1523
Csp6I	GTAC	2 cut(s)	355, 1684
CspCI	CAANNNNNGTGG	6 cut(s)	688, 723, 1021, 1056, 1145, 1180
CviAII	CATG	6 cut(s)	520, 1010, 1265, 1717, 1830, 2266
CviQI	GTAC	2 cut(s)	355, 1684
DdeI	CTNAG	9 cut(s)	486, 549, 975, 1389, 1640, 1859, 2152, 2245, 2333
DraI	TTTAAA	1 cut(s)	738
DraIII	CACNNNGTG	1 cut(s)	1862
DriI	GACNNNNNGTC	1 cut(s)	660
EaeI	YGGCCR	2 cut(s)	1049, 1734
Eam1104I	CTCTTC	2 cut(s)	1312, 1335
Eam1105I	GACNNNNNGTC	1 cut(s)	660
EarI	CTCTTC	2 cut(s)	1312, 1335
EciI	GGCGGA	1 cut(s)	1733
Ecl136II	GAGCTC	1 cut(s)	1714
Eco130I	CCWWGG	3 cut(s)	1659, 1784, 1849
Eco147I	AGGCCT	2 cut(s)	1321, 2042
Eco24I	GRGCYC	2 cut(s)	1557, 1716
Eco32I	GATATC	1 cut(s)	1474
Eco47I	GGWCC	6 cut(s)	314, 545, 1062, 1297, 1846, 2262
Eco53kI	GAGCTC	1 cut(s)	1714
Eco57I	CTGAAG	1 cut(s)	294
Eco81I	CCTNAGG	2 cut(s)	549, 1640
Eco88I	CYCGRG	1 cut(s)	1239
Eco91I	GGTNACC	1 cut(s)	612
EcoICRI	GAGCTC	1 cut(s)	1714
EcoNI	CCTNNNNNAGG	1 cut(s)	2274
EcoO109I	RGGNCCY	2 cut(s)	1297, 2125
EcoO65I	GGTNACC	1 cut(s)	612
EcoRII	CCWGG	4 cut(s)	472, 658, 1458, 1702
EcoRV	GATATC	1 cut(s)	1474
EcoT14I	CCWWGG	3 cut(s)	1659, 1784, 1849
EcoT22I	ATGCAT	1 cut(s)	798
EcoT38I	GRGCYC	2 cut(s)	1557, 1716
ErhI	CCWWGG	3 cut(s)	1659, 1784, 1849
FaeI	CATG	6 cut(s)	523, 1013, 1268, 1720, 1833, 2269
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FaqI	GGGAC	3 cut(s)	666, 1283, 1896
FatI	CATG	6 cut(s)	519, 1009, 1264, 1716, 1829, 2265
FauI	CCCGC	1 cut(s)	1911
FauNDI	CATATG	2 cut(s)	855, 1138
FbaI	TGATCA	2 cut(s)	2050, 2224
FblI	GTMKAC	2 cut(s)	985, 1096
FokI	GGATG	9 cut(s)	170, 711, 801, 816, 886, 1454, 1475, 1481, 1637
FriOI	GRGCYC	2 cut(s)	1557, 1716
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	9 cut(s)	516, 698, 1051, 1321, 1665, 1736, 2042, 2064, 2126
HapII	CCGG	1 cut(s)	1364
HgaI	GACGC	1 cut(s)	1523
Hin1I	GRCGYC	1 cut(s)	1534
Hin1II	CATG	6 cut(s)	523, 1013, 1268, 1720, 1833, 2269
HindIII	AAGCTT	1 cut(s)	1670
HinfI	GANTC	3 cut(s)	655, 2206, 2324
HpaII	CCGG	1 cut(s)	1364
HphI	GGTGA	5 cut(s)	203, 489, 558, 1721, 2219
Hpy166II	GTNNAC	6 cut(s)	497, 545, 986, 1097, 1856, 2086
Hpy8I	GTNNAC	6 cut(s)	497, 545, 986, 1097, 1856, 2086
HpyAV	CCTTC	5 cut(s)	902, 1375, 1544, 1785, 2075
HpyCH4III	ACNGT	6 cut(s)	74, 318, 759, 789, 2115, 2238
HpyF3I	CTNAG	9 cut(s)	486, 549, 975, 1389, 1640, 1859, 2152, 2245, 2333
Hsp92I	GRCGYC	1 cut(s)	1534
Hsp92II	CATG	6 cut(s)	523, 1013, 1268, 1720, 1833, 2269
KflI	GGGWCCC	1 cut(s)	1297
Ksp22I	TGATCA	2 cut(s)	2050, 2224
LmnI	GCTCC	5 cut(s)	174, 1342, 1408, 1506, 1894
LweI	GCATC	7 cut(s)	106, 265, 783, 805, 1273, 1571, 2146
MaeIII	GTNAC	4 cut(s)	68, 612, 1429, 2109
MfeI	CAATTG	2 cut(s)	1434, 1571
MflI	RGATCY	4 cut(s)	200, 482, 1228, 2279
MhlI	GDGCHC	7 cut(s)	179, 1246, 1557, 1716, 1858, 2032, 2311
MlsI	TGGCCA	2 cut(s)	1051, 1736
MluNI	TGGCCA	2 cut(s)	1051, 1736
MlyI	GAGTC	3 cut(s)	649, 2215, 2333
MmeI	TCCRAC	1 cut(s)	1238
Mox20I	TGGCCA	2 cut(s)	1051, 1736
Mph1103I	ATGCAT	1 cut(s)	798
MroXI	GAANNNNTTC	4 cut(s)	285, 364, 432, 562
MscI	TGGCCA	2 cut(s)	1051, 1736
MseI	TTAA	9 cut(s)	60, 134, 672, 737, 882, 1223, 1751, 1985, 2117
MslI	CAYNNNNRTG	7 cut(s)	633, 771, 1128, 1605, 2135, 2220, 2270
Msp20I	TGGCCA	2 cut(s)	1051, 1736
MspA1I	CMGCKG	3 cut(s)	388, 1079, 2260
MspI	CCGG	1 cut(s)	1364
MspR9I	CCNGG	5 cut(s)	474, 660, 1365, 1460, 1704
MunI	CAATTG	2 cut(s)	1434, 1571
Mva1269I	GAATGC	3 cut(s)	285, 1110, 1960
MvaI	CCWGG	4 cut(s)	474, 660, 1460, 1704
NciI	CCSGG	1 cut(s)	1365
NdeI	CATATG	2 cut(s)	855, 1138
NheI	GCTAGC	1 cut(s)	2003
NlaIII	CATG	6 cut(s)	523, 1013, 1268, 1720, 1833, 2269
NlaIV	GGNNCC	9 cut(s)	202, 441, 1298, 1299, 1344, 1410, 1516, 2127, 2308
NmuCI	GTSAC	1 cut(s)	2109
NsiI	ATGCAT	1 cut(s)	798
NspI	RCATGY	1 cut(s)	1268
NspV	TTCGAA	1 cut(s)	1102
PceI	AGGCCT	2 cut(s)	1321, 2042
PctI	GAATGC	3 cut(s)	285, 1110, 1960
PdmI	GAANNNNTTC	4 cut(s)	285, 364, 432, 562
PflFI	GACNNNGTC	1 cut(s)	1449
PfoI	TCCNGGA	1 cut(s)	1458
Ple19I	CGATCG	1 cut(s)	1480
PleI	GAGTC	3 cut(s)	649, 2214, 2332
PpsI	GAGTC	3 cut(s)	649, 2214, 2332
PpuMI	RGGWCCY	1 cut(s)	1297
Psp124BI	GAGCTC	1 cut(s)	1716
Psp5II	RGGWCCY	1 cut(s)	1297
Psp6I	CCWGG	4 cut(s)	472, 658, 1458, 1702
PspEI	GGTNACC	1 cut(s)	612
PspGI	CCWGG	4 cut(s)	472, 658, 1458, 1702
PspN4I	GGNNCC	9 cut(s)	202, 441, 1298, 1299, 1344, 1410, 1516, 2127, 2308
PspPI	GGNCC	9 cut(s)	314, 545, 696, 1062, 1297, 1663, 1846, 2125, 2262
PspPPI	RGGWCCY	1 cut(s)	1297
PstI	CTGCAG	2 cut(s)	1795, 1930
PstNI	CAGNNNCTG	2 cut(s)	2113, 2327
PsuI	RGATCY	4 cut(s)	200, 482, 1228, 2279
PsyI	GACNNNGTC	1 cut(s)	1449
PvuI	CGATCG	1 cut(s)	1480
PvuII	CAGCTG	2 cut(s)	388, 1079
RsaI	GTAC	2 cut(s)	356, 1685
RsaNI	GTAC	2 cut(s)	355, 1684
RseI	CAYNNNNRTG	7 cut(s)	633, 771, 1128, 1605, 2135, 2220, 2270
SacI	GAGCTC	1 cut(s)	1716
SaqAI	TTAA	9 cut(s)	60, 134, 672, 737, 882, 1223, 1751, 1985, 2117
Sau96I	GGNCC	9 cut(s)	314, 545, 696, 1062, 1297, 1663, 1846, 2125, 2262
SbfI	CCTGCAGG	1 cut(s)	1930
SchI	GAGTC	3 cut(s)	649, 2215, 2333
ScrFI	CCNGG	5 cut(s)	474, 660, 1365, 1460, 1704
SdaI	CCTGCAGG	1 cut(s)	1930
SduI	GDGCHC	7 cut(s)	179, 1246, 1557, 1716, 1858, 2032, 2311
SfaNI	GCATC	7 cut(s)	106, 265, 783, 805, 1273, 1571, 2146
SfcI	CTRYAG	3 cut(s)	336, 1791, 1926
SfuI	TTCGAA	1 cut(s)	1102
SinI	GGWCC	6 cut(s)	314, 545, 1062, 1297, 1846, 2262
SmiI	ATTTAAAT	1 cut(s)	738
SmiMI	CAYNNNNRTG	7 cut(s)	633, 771, 1128, 1605, 2135, 2220, 2270
SmlI	CTYRAG	1 cut(s)	1619
SmoI	CTYRAG	1 cut(s)	1619
SpeI	ACTAGT	1 cut(s)	44
Sse8387I	CCTGCAGG	1 cut(s)	1930
SseBI	AGGCCT	2 cut(s)	1321, 2042
SsiI	CCGC	3 cut(s)	1744, 1904, 2260
SspI	AATATT	3 cut(s)	270, 416, 526
SstI	GAGCTC	1 cut(s)	1716
StuI	AGGCCT	2 cut(s)	1321, 2042
StyD4I	CCNGG	5 cut(s)	472, 658, 1363, 1458, 1702
StyI	CCWWGG	3 cut(s)	1659, 1784, 1849
SwaI	ATTTAAAT	1 cut(s)	738
TaaI	ACNGT	6 cut(s)	74, 318, 759, 789, 2115, 2238
TaqI	TCGA	3 cut(s)	1102, 1476, 1837
TatI	WGTACW	1 cut(s)	354
Tru1I	TTAA	9 cut(s)	60, 134, 672, 737, 882, 1223, 1751, 1985, 2117
Tru9I	TTAA	9 cut(s)	60, 134, 672, 737, 882, 1223, 1751, 1985, 2117
TscAI	CASTG	4 cut(s)	184, 1378, 1884, 2118
TseFI	GTSAC	1 cut(s)	2109
Tsp45I	GTSAC	1 cut(s)	2109
TspGWI	ACGGA	1 cut(s)	636
TspRI	CASTG	4 cut(s)	184, 1378, 1884, 2118
Tth111I	GACNNNGTC	1 cut(s)	1449
VneI	GTGCAC	1 cut(s)	1854
VpaK11BI	GGWCC	6 cut(s)	314, 545, 1062, 1297, 1846, 2262
XagI	CCTNNNNNAGG	1 cut(s)	2274
XapI	RAATTY	4 cut(s)	56, 640, 1351, 2317
XbaI	TCTAGA	1 cut(s)	1399
XceI	RCATGY	1 cut(s)	1268
XmiI	GTMKAC	2 cut(s)	985, 1096
XmnI	GAANNNNTTC	4 cut(s)	285, 364, 432, 562
Zsp2I	ATGCAT	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.