Prupe.4G220000_v2.0.a1

Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014695
Physical Location & Seq
Reverse (-)
13817112 .. 13819488
2377 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G220000.1

Sequence Viewer

Length: 1047 bp
ATGACCAAGGAGACCAAAACAAGGGTGCTTGGTGCATCCTTCAATCATATCTATCGCGAGGCGAACTTCACGAATGAAATTGAAGGGAAGCACCAGCTATTCAATTGGAATGGTACTGACCACAGTAGAAAGGATGATAAAGGCATTGGAGTGGAAGAGCCTCTCAAGTTTCTCTTCGGAAGACTAGCTAGAGTTCTAATTGACAAGAATGCCTTAACAGTTTACATACCATCCAATCAAGCCCAAGATGAACACAAGGTTCAGCCATATGCAAGGAAAGAGGATCAGACTGCAATGAAGGCTGTGACTCGAGTGAAAATACTACATGGAAACACTAGTATTCCACCAGCTTGCAATTTTACTCACAAAGTCCCAGATGTGGTTTTTTCCTCTTGGGGCTTCACAGGAAATCTATTTCATGAGTTCAATGAATCCATCGTCCCCTTGTTCATCACGTCCCGGCACTTTCAATCCCACCTTCAGTTTGTCAGAACTGATTTGAAGTGTTGGTGGGTTAGCAAAAATTCCTGGAGGTTAATGTTCGGGTTCAAGCAGTTCCTAAGAGAATCATACATGCTGAAAATGAAGGATGCATCGGATCAGAAGAATAAAAAACCAGCGCTAGTTCTCATATCTCGTCGCAAAACAAGGAAGTTTTTGAATGAAGATAAAATGACTTTCAAGTCATCGCTGCAAAGCTTACCCACCCAGACATCAAATTTGGACATGTTTTCCGGATTGGTGAACTTGTGTAGTGTCATGGTTGGAGCTCATGGTGCTGGCCTTACAAATGCACTCTTCTTACCAGCCAGGAAAACTATTATGGTGGACCGGCGAGTGAAATGGGATTGTGTTATTTGGAGTAGAAGATTAAACCAGAGGATAGTTCACGCATTATTATTGTCTATGGCCATGTGTATATTCTTGAAGGGCTATCAGGCTGCCAGGGCTGTGTATGTTGATGGGCAGAATCTCAAGGTTAATTTGGTGAGGTTCAGGGAAATGCTTATTGAAGCTATGAAACCTCTTGGAGGCTCCACCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

349

Amino Acids

40.03

Weight (kDa)

9.99

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014695)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23260 FvH4_6g19650
malus_domestica MD03G1195900.v1.1
prunus_persica Prupe.4G220000_v2.0.a1
pyrus_communis pycom03g14810
rosa_chinensis RchiOBHm_Chr5g0040951
rosa_laevigata RLG00000034017
rosa_multiflora Rmu_sc0006651.1_g000006 Rmu_sc0006651.1_g000009
rosa_roxburghii Rroxscaffold_1G00039740
rosa_rugosa Rorug05G0189000 Rorug05G0189100 Rorug05G0189200
rosa_samantha Rh5BG279500 Rh5CG311700 Rh5DG287600
rosa_wichuraiana Rw5G025800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 682
AccII CGCG 1 cut(s) 57
AccIII TCCGGA 1 cut(s) 734
AclWI GGATC 2 cut(s) 291, 606
AcoI YGGCCR 1 cut(s) 909
AcsI RAATTY 2 cut(s) 523, 718
AcuI CTGAAG 1 cut(s) 464
AfaI GTAC 1 cut(s) 115
AfeI AGCGCT 1 cut(s) 621
AfiI CCNNNNNNNGG 3 cut(s) 21, 379, 1031
AflIII ACRYGT 1 cut(s) 726
AhlI ACTAGT 1 cut(s) 335
AjiI CACGTC 1 cut(s) 456
AjnI CCWGG 3 cut(s) 527, 809, 944
AluBI AGCT 6 cut(s) 97, 188, 350, 699, 770, 1016
AluI AGCT 6 cut(s) 97, 188, 350, 699, 770, 1016
Alw21I GWGCWC 1 cut(s) 772
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 2 cut(s) 291, 606
Ama87I CYCGRG 1 cut(s) 309
Aor13HI TCCGGA 1 cut(s) 734
Aor51HI AGCGCT 1 cut(s) 621
AoxI GGCC 2 cut(s) 781, 909
ApeKI GCWGC 2 cut(s) 691, 941
ApoI RAATTY 2 cut(s) 523, 718
ArsI GACNNNNNNTTYG 2 cut(s) 703, 735
AspLEI GCGC 1 cut(s) 622
AspS9I GGNCC 1 cut(s) 829
AsuC2I CCSGG 1 cut(s) 460
AsuHPI GGTGA 2 cut(s) 754, 1000
AvaI CYCGRG 1 cut(s) 309
AvaII GGWCC 1 cut(s) 829
BalI TGGCCA 1 cut(s) 911
BanII GRGCYC 1 cut(s) 772
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 772
BbvI GCAGC 2 cut(s) 678, 928
BccI CCATC 3 cut(s) 238, 443, 956
BciT130I CCWGG 3 cut(s) 529, 811, 946
BcnI CCSGG 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 5
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 4 cut(s) 185, 189, 336, 623
BfoI RGCGCY 1 cut(s) 623
BisI GCNGC 2 cut(s) 692, 942
BlsI GCNGC 2 cut(s) 693, 943
Bme1390I CCNGG 4 cut(s) 460, 529, 811, 946
Bme18I GGWCC 1 cut(s) 829
BmeT110I CYCGRG 1 cut(s) 309
BmgBI CACGTC 1 cut(s) 456
BmgT120I GGNCC 1 cut(s) 829
BmiI GGNNCC 1 cut(s) 1036
BmrFI CCNGG 4 cut(s) 460, 529, 811, 946
BmsI GCATC 3 cut(s) 44, 580, 602
BpiI GAAGAC 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 550
BpuEI CTTGAG 2 cut(s) 149, 959
BpuMI CCSGG 1 cut(s) 460
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 6, 945
BsaWI WCCGGW 1 cut(s) 734
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 379, 1031
Bse118I RCCGGY 1 cut(s) 831
Bse3DI GCAATG 1 cut(s) 300
BseAI TCCGGA 1 cut(s) 734
BseBI CCWGG 3 cut(s) 529, 811, 946
BseDI CCNNGG 2 cut(s) 6, 945
BseGI GGATG 4 cut(s) 35, 139, 230, 595
BseLI CCNNNNNNNGG 3 cut(s) 21, 379, 1031
BseMI GCAATG 1 cut(s) 300
BseXI GCAGC 2 cut(s) 678, 928
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 2 cut(s) 783, 911
BsiHKAI GWGCWC 1 cut(s) 772
BsiHKCI CYCGRG 1 cut(s) 309
BsiSI CCGG 3 cut(s) 460, 735, 832
BslFI GGGAC 3 cut(s) 356, 425, 442
BslI CCNNNNNNNGG 3 cut(s) 21, 379, 1031
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 3 cut(s) 356, 425, 442
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 2 cut(s) 783, 911
Bso31I GGTCTC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 772
Bsp13I TCCGGA 1 cut(s) 734
Bsp143I GATC 2 cut(s) 283, 598
Bsp68I TCGCGA 1 cut(s) 57
BspANI GGCC 2 cut(s) 783, 911
BspEI TCCGGA 1 cut(s) 734
BspFNI CGCG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 1036
BspPI GGATC 2 cut(s) 291, 606
BspQI GCTCTTC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 831
BssAI RCCGGY 1 cut(s) 831
BssECI CCNNGG 2 cut(s) 6, 945
BssMI GATC 2 cut(s) 283, 598
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 3 cut(s) 529, 811, 946
Bst4CI ACNGT 2 cut(s) 125, 220
Bst6I CTCTTC 3 cut(s) 150, 179, 803
BstC8I GCNNGC 2 cut(s) 352, 781
BstDEI CTNAG 1 cut(s) 560
BstENI CCTNNNNNAGG 1 cut(s) 1029
BstF5I GGATG 4 cut(s) 35, 139, 230, 595
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 623
BstHHI GCGC 1 cut(s) 622
BstKTI GATC 2 cut(s) 286, 601
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 2 cut(s) 283, 598
BstMWI GCNNNNNNNGC 3 cut(s) 299, 776, 947
BstNI CCWGG 3 cut(s) 529, 811, 946
BstNSI RCATGY 2 cut(s) 577, 730
BstSCI CCNGG 4 cut(s) 458, 527, 809, 944
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 678, 928
BstV2I GAAGAC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 783, 911
BtgZI GCGATG 1 cut(s) 672
BtrI CACGTC 1 cut(s) 456
BtsCI GGATG 4 cut(s) 35, 139, 230, 595
BtuMI TCGCGA 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 352, 781
CciI TCATGA 1 cut(s) 418
CfoI GCGC 1 cut(s) 622
Cfr10I RCCGGY 1 cut(s) 831
Cfr13I GGNCC 1 cut(s) 829
Csp6I GTAC 1 cut(s) 114
CviAII CATG 7 cut(s) 326, 419, 574, 727, 760, 773, 913
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 560
DpnI GATC 2 cut(s) 285, 600
DpnII GATC 2 cut(s) 283, 598
DrdI GACNNNNNNGTC 1 cut(s) 682
DseDI GACNNNNNNGTC 1 cut(s) 682
EaeI YGGCCR 1 cut(s) 909
Eam1104I CTCTTC 3 cut(s) 150, 179, 803
EarI CTCTTC 3 cut(s) 150, 179, 803
Ecl136II GAGCTC 1 cut(s) 770
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 772
Eco31I GGTCTC 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 829
Eco47III AGCGCT 1 cut(s) 621
Eco53kI GAGCTC 1 cut(s) 770
Eco57I CTGAAG 1 cut(s) 464
Eco88I CYCGRG 1 cut(s) 309
EcoICRI GAGCTC 1 cut(s) 770
EcoNI CCTNNNNNAGG 1 cut(s) 1029
EcoRII CCWGG 3 cut(s) 527, 809, 944
EcoT14I CCWWGG 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 772
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 7 cut(s) 329, 422, 577, 730, 763, 776, 916
FalI AAGNNNNNCTT 4 cut(s) 158, 190, 197, 229
FaqI GGGAC 3 cut(s) 356, 425, 442
FatI CATG 7 cut(s) 325, 418, 573, 726, 759, 772, 912
FauNDI CATATG 1 cut(s) 268
Fnu4HI GCNGC 2 cut(s) 692, 942
FokI GGATG 4 cut(s) 22, 146, 217, 602
FriOI GRGCYC 1 cut(s) 772
Fsp4HI GCNGC 2 cut(s) 692, 942
FspBI CTAG 4 cut(s) 185, 189, 336, 623
GlaI GCGC 1 cut(s) 621
GluI GCNGC 2 cut(s) 692, 942
GsuI CTGGAG 1 cut(s) 550
HaeII RGCGCY 1 cut(s) 623
HaeIII GGCC 2 cut(s) 783, 911
HapII CCGG 3 cut(s) 460, 735, 832
HhaI GCGC 1 cut(s) 622
Hin1II CATG 7 cut(s) 329, 422, 577, 730, 763, 776, 916
Hin6I GCGC 1 cut(s) 620
HinP1I GCGC 1 cut(s) 620
HindIII AAGCTT 1 cut(s) 697
HinfI GANTC 4 cut(s) 307, 431, 566, 970
HpaII CCGG 3 cut(s) 460, 735, 832
HphI GGTGA 2 cut(s) 754, 1000
Hpy166II GTNNAC 4 cut(s) 223, 745, 829, 889
Hpy188I TCNGA 5 cut(s) 179, 288, 491, 598, 603
Hpy188III TCNNGA 5 cut(s) 56, 70, 419, 735, 925
Hpy8I GTNNAC 4 cut(s) 223, 745, 829, 889
Hpy99I CGWCG 1 cut(s) 642
HpyAV CCTTC 6 cut(s) 49, 77, 292, 488, 580, 922
HpyCH4III ACNGT 2 cut(s) 125, 220
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 7 cut(s) 35, 272, 293, 354, 593, 694, 794
HpyF10VI GCNNNNNNNGC 3 cut(s) 299, 776, 947
HpyF3I CTNAG 1 cut(s) 560
HpySE526I ACGT 1 cut(s) 455
Hsp92II CATG 7 cut(s) 329, 422, 577, 730, 763, 776, 916
HspAI GCGC 1 cut(s) 620
Kpn2I TCCGGA 1 cut(s) 734
Kzo9I GATC 2 cut(s) 283, 598
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 2 cut(s) 767, 1040
Lsp1109I GCAGC 2 cut(s) 678, 928
LweI GCATC 3 cut(s) 44, 580, 602
MaeI CTAG 4 cut(s) 185, 189, 336, 623
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 1 cut(s) 304
MalI GATC 2 cut(s) 285, 600
MboI GATC 2 cut(s) 283, 598
MboII GAAGA 7 cut(s) 166, 167, 192, 616, 677, 790, 879
MfeI CAATTG 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 772
MlsI TGGCCA 1 cut(s) 911
MluCI AATT 7 cut(s) 78, 103, 198, 355, 523, 718, 982
MluNI TGGCCA 1 cut(s) 911
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 745
MnlI CCTC 9 cut(s) 52, 171, 274, 400, 525, 873, 984, 1025, 1035
Mox20I TGGCCA 1 cut(s) 911
Mph1103I ATGCAT 1 cut(s) 595
MroI TCCGGA 1 cut(s) 734
MscI TGGCCA 1 cut(s) 911
MseI TTAA 4 cut(s) 215, 536, 872, 981
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 911
MspI CCGG 3 cut(s) 460, 735, 832
MspR9I CCNGG 4 cut(s) 460, 529, 811, 946
MunI CAATTG 1 cut(s) 103
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 3 cut(s) 529, 811, 946
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 299, 776, 947
NciI CCSGG 1 cut(s) 460
NdeI CATATG 1 cut(s) 268
NdeII GATC 2 cut(s) 283, 598
NlaIII CATG 7 cut(s) 329, 422, 577, 730, 763, 776, 916
NlaIV GGNNCC 1 cut(s) 1036
NmuCI GTSAC 1 cut(s) 304
NruI TCGCGA 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 2 cut(s) 577, 730
PaeR7I CTCGAG 1 cut(s) 309
PagI TCATGA 1 cut(s) 418
PciI ACATGT 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 150
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 3 cut(s) 431, 566, 970
PfoI TCCNGGA 1 cut(s) 527
PkrI GCNGC 2 cut(s) 693, 943
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PscI ACATGT 1 cut(s) 726
Psp124BI GAGCTC 1 cut(s) 772
Psp6I CCWGG 3 cut(s) 527, 809, 944
PspGI CCWGG 3 cut(s) 527, 809, 944
PspN4I GGNNCC 1 cut(s) 1036
PspPI GGNCC 1 cut(s) 829
PspXI VCTCGAGB 1 cut(s) 309
RruI TCGCGA 1 cut(s) 57
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 772
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 4 cut(s) 215, 536, 872, 981
SatI GCNGC 2 cut(s) 692, 942
Sau3AI GATC 2 cut(s) 283, 598
Sau96I GGNCC 1 cut(s) 829
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 4 cut(s) 460, 529, 811, 946
SduI GDGCHC 1 cut(s) 772
SfaNI GCATC 3 cut(s) 44, 580, 602
Sfr274I CTCGAG 1 cut(s) 309
SinI GGWCC 1 cut(s) 829
SlaI CTCGAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 3 cut(s) 164, 309, 974
SmoI CTYRAG 3 cut(s) 164, 309, 974
SpeI ACTAGT 1 cut(s) 335
Sse9I AATT 7 cut(s) 78, 103, 198, 355, 523, 718, 982
SspMI CTAG 4 cut(s) 185, 189, 336, 623
SstI GAGCTC 1 cut(s) 772
StyD4I CCNGG 4 cut(s) 458, 527, 809, 944
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 125, 220
TaiI ACGT 1 cut(s) 458
TaqI TCGA 1 cut(s) 310
TasI AATT 7 cut(s) 78, 103, 198, 355, 523, 718, 982
TfiI GAWTC 3 cut(s) 431, 566, 970
Tru1I TTAA 4 cut(s) 215, 536, 872, 981
Tru9I TTAA 4 cut(s) 215, 536, 872, 981
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 691, 941
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 9 cut(s) 90, 264, 311, 407, 439, 444, 599, 678, 1034
VpaK11BI GGWCC 1 cut(s) 829
XagI CCTNNNNNAGG 1 cut(s) 1029
XapI RAATTY 2 cut(s) 523, 718
XceI RCATGY 2 cut(s) 577, 730
XhoI CTCGAG 1 cut(s) 309
XspI CTAG 4 cut(s) 185, 189, 336, 623
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.