Rh5DG287600

Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0014695
Physical Location & Seq
Reverse (-)
35791582 .. 35794490
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG287600.1

Sequence Viewer

Length: 1155 bp
ATGGCCAAAGAATCGAACAAGGTGATGCTTGGTGCAAGTTCAATCATGATTTGCCTTCTTACCATTGGTTTGCTTTATGCTGCATTGACCATAAACCCCTTTGAGACACGGAAGCACAAGCTATCCAATTTGGATGGTAAGAGCGTTGGAGGGGAAGAACCTCTGAGATTTCTCTTCAGAAGACTGGTTAGAGGAAAAGATCGAGTTCAGCTCGATACCACTGGGTTGTCTTGCCACTCTGACCTTCACTTTGAACTGTGTTTGACTAATAAACCAGTCATAATTGACAAGAATGCATCAACAATTTATATACCATCCAAAGAAGCCAAATCTGAATACAAGGTTAAGCCATATGCAAGAAAAGAGGATGAGACTGCAATGAAGAATGTCACACCAGTAAGAATACTACATGGTAACATTACACCACCAGCCTGCGATTTTATTCACAGAGTTCCAGCAGTGATCTTCTCCTCAGGTGGCTTCACAGGAAACCTATTTCATGAGTTTAATGAGATCATCATCCCCTTGTTCCTCACCTGCCACCACTTTCGGTCCCGCATTCAATTTGTTATAACTGACTTTAAGCCTTGGTGGGTGGAAAAGTACAGTCGAGTTCTATCCCATTTGTCCAGTCATGATGTTATAAATCCGATTGAGAATGGTAGAGTTCACTGCTTTCCTGGAGCTGTCATGGGGCTGAGATATCATGACAACTTGGCTCTAAATTATACAGAAATTCCAGGAGGGTACTCTATGCTTGATTTCAAGCAATTCCTTAGAGAGTCATATATGCTGAAAATGAAGCATGTCTCGGAGATGAAAAGGCAAAGGCCGGTGCTAATGCATCTATCTCGTCGCGAAACAAGGAAGTTTCTGAATGAGGATAAAATAGTGGAAATGATGGAAGCATTAGGCTTTCAAGTCATTGTGGCAACGCCCAATCAGACATCAAATTTGGACACATTTTCCGGCTTGGTGAACTCATGCAGTGTCATTGTTGGAGCTCATGGTGCTGGCCTTACAAATGCAGTGTTCTTGCCAACCAAGGCAGTAATGGTGCAAGTGGTGCCTCTGGGGTTAGATTGGGCTTCGGCTGCCTATTATGGAGAAACGGTGATGGCCGTGGTGCGTAGAGCTCAAGCGTTGTTACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 ko00515 ko01100 map00514 map00515 map01100
Pfam Domains
Protein Families
DUF563

Protein Analysis

384

Amino Acids

43.3

Weight (kDa)

9.2

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 264 - 353 5.7e-12 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014695)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23260 FvH4_6g19650
malus_domestica MD03G1195900.v1.1
prunus_persica Prupe.4G220000_v2.0.a1
pyrus_communis pycom03g14810
rosa_chinensis RchiOBHm_Chr5g0040951
rosa_laevigata RLG00000034017
rosa_multiflora Rmu_sc0006651.1_g000006 Rmu_sc0006651.1_g000009
rosa_roxburghii Rroxscaffold_1G00039740
rosa_rugosa Rorug05G0189000 Rorug05G0189100 Rorug05G0189200
rosa_samantha Rh5BG279500 Rh5CG311700 Rh5DG287600
rosa_wichuraiana Rw5G025800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 572, 644
AarI CACCTGC 1 cut(s) 545
Acc36I ACCTGC 1 cut(s) 545
AccB1I GGYRCC 1 cut(s) 1066
AccII CGCG 1 cut(s) 858
AciI CCGC 1 cut(s) 556
AcoI YGGCCR 2 cut(s) 3, 1119
AcsI RAATTY 2 cut(s) 735, 952
AcuI CTGAAG 1 cut(s) 160
AfaI GTAC 2 cut(s) 605, 749
AgsI TTSAA 5 cut(s) 42, 254, 563, 766, 920
AjnI CCWGG 2 cut(s) 679, 739
AluBI AGCT 5 cut(s) 121, 211, 686, 1004, 1136
AluI AGCT 5 cut(s) 121, 211, 686, 1004, 1136
Alw21I GWGCWC 2 cut(s) 1006, 1138
Alw26I GTCTC 3 cut(s) 98, 365, 814
AoxI GGCC 4 cut(s) 3, 830, 1015, 1119
ApeKI GCWGC 2 cut(s) 80, 1094
ApoI RAATTY 2 cut(s) 735, 952
ArsI GACNNNNNNTTYG 4 cut(s) 233, 265, 937, 969
AspS9I GGNCC 1 cut(s) 552
AsuHPI GGTGA 4 cut(s) 34, 526, 988, 1126
AvaII GGWCC 1 cut(s) 552
AxyI CCTNAGG 1 cut(s) 472
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 1066
BanII GRGCYC 2 cut(s) 1006, 1138
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 2 cut(s) 1006, 1138
BbvI GCAGC 2 cut(s) 67, 1081
BccI CCATC 4 cut(s) 128, 322, 895, 1111
BceAI ACGGC 1 cut(s) 1106
BcgI CGANNNNNNTGC 2 cut(s) 833, 867
BciT130I CCWGG 2 cut(s) 681, 741
BcoDI GTCTC 3 cut(s) 98, 365, 814
BfuAI ACCTGC 1 cut(s) 545
BisI GCNGC 2 cut(s) 81, 1095
BlsI GCNGC 2 cut(s) 82, 1096
Bme1390I CCNGG 2 cut(s) 681, 741
Bme18I GGWCC 1 cut(s) 552
BmgT120I GGNCC 1 cut(s) 552
BmiI GGNNCC 2 cut(s) 554, 1068
BmrFI CCNGG 2 cut(s) 681, 741
BmrI ACTGGG 1 cut(s) 231
BmsI GCATC 3 cut(s) 15, 305, 853
BmuI ACTGGG 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 195, 227
BpmI CTGGAG 1 cut(s) 702
BpuEI CTTGAG 1 cut(s) 1122
BsaBI GATNNNNATC 1 cut(s) 518
BsaJI CCNNGG 3 cut(s) 587, 1044, 1122
BsaXI ACNNNNNCTCC 2 cut(s) 1098, 1128
Bse118I RCCGGY 1 cut(s) 832
Bse1I ACTGG 5 cut(s) 189, 226, 275, 395, 630
Bse21I CCTNAGG 1 cut(s) 472
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 518
BseBI CCWGG 2 cut(s) 681, 741
BseDI CCNNGG 3 cut(s) 587, 1044, 1122
BseGI GGATG 4 cut(s) 139, 314, 373, 519
BseJI GATNNNNATC 1 cut(s) 518
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 3 cut(s) 155, 486, 689
BseNI ACTGG 5 cut(s) 189, 226, 275, 395, 630
BseRI GAGGAG 1 cut(s) 460
BseXI GCAGC 2 cut(s) 67, 1081
Bsh1236I CGCG 1 cut(s) 858
BshFI GGCC 4 cut(s) 5, 832, 1017, 1121
BshNI GGYRCC 1 cut(s) 1066
BsiHKAI GWGCWC 2 cut(s) 1006, 1138
BsiSI CCGG 2 cut(s) 833, 969
BslFI GGGAC 1 cut(s) 538
BsmAI GTCTC 3 cut(s) 98, 365, 814
BsmFI GGGAC 1 cut(s) 538
BsmI GAATGC 2 cut(s) 298, 558
BsnI GGCC 4 cut(s) 5, 832, 1017, 1121
Bsp1286I GDGCHC 2 cut(s) 1006, 1138
Bsp143I GATC 3 cut(s) 199, 462, 513
Bsp68I TCGCGA 1 cut(s) 858
BspACI CCGC 1 cut(s) 556
BspANI GGCC 4 cut(s) 5, 832, 1017, 1121
BspCNI CTCAG 3 cut(s) 156, 485, 690
BspFNI CGCG 1 cut(s) 858
BspHI TCATGA 4 cut(s) 45, 499, 634, 706
BspLI GGNNCC 2 cut(s) 554, 1068
BspMI ACCTGC 1 cut(s) 545
BspT107I GGYRCC 1 cut(s) 1066
BsrDI GCAATG 1 cut(s) 384
BsrFI RCCGGY 1 cut(s) 832
BsrI ACTGG 5 cut(s) 189, 226, 275, 395, 630
BssAI RCCGGY 1 cut(s) 832
BssECI CCNNGG 3 cut(s) 587, 1044, 1122
BssMI GATC 3 cut(s) 199, 462, 513
BssT1I CCWWGG 2 cut(s) 587, 1044
Bst2UI CCWGG 2 cut(s) 681, 741
Bst4CI ACNGT 4 cut(s) 258, 608, 1114, 1152
Bst6I CTCTTC 1 cut(s) 179
BstAPI GCANNNNNTGC 1 cut(s) 1066
BstC8I GCNNGC 2 cut(s) 433, 1015
BstDEI CTNAG 4 cut(s) 164, 472, 698, 776
BstDSI CCRYGG 1 cut(s) 1122
BstF5I GGATG 4 cut(s) 139, 314, 373, 519
BstFNI CGCG 1 cut(s) 858
BstKTI GATC 3 cut(s) 202, 465, 516
BstMAI GTCTC 3 cut(s) 98, 365, 814
BstMBI GATC 3 cut(s) 199, 462, 513
BstMWI GCNNNNNNNGC 3 cut(s) 1010, 1066, 1094
BstNI CCWGG 2 cut(s) 681, 741
BstNSI RCATGY 1 cut(s) 809
BstSCI CCNGG 2 cut(s) 679, 739
BstUI CGCG 1 cut(s) 858
BstV1I GCAGC 2 cut(s) 67, 1081
BstV2I GAAGAC 1 cut(s) 187
Bsu36I CCTNAGG 1 cut(s) 472
BsuRI GGCC 4 cut(s) 5, 832, 1017, 1121
BtgI CCRYGG 1 cut(s) 1122
BtsCI GGATG 4 cut(s) 139, 314, 373, 519
BtsI GCAGTG 4 cut(s) 465, 670, 994, 1035
BtsIMutI CAGTG 5 cut(s) 219, 465, 670, 994, 1035
BtuMI TCGCGA 1 cut(s) 858
BveI ACCTGC 1 cut(s) 545
Cac8I GCNNGC 2 cut(s) 433, 1015
CciI TCATGA 4 cut(s) 45, 499, 634, 706
Cfr10I RCCGGY 1 cut(s) 832
Cfr13I GGNCC 1 cut(s) 552
Csp6I GTAC 2 cut(s) 604, 748
CviAII CATG 9 cut(s) 46, 410, 500, 635, 691, 707, 806, 984, 1007
CviQI GTAC 2 cut(s) 604, 748
DdeI CTNAG 4 cut(s) 164, 472, 698, 776
DpnI GATC 3 cut(s) 201, 464, 515
DpnII GATC 3 cut(s) 199, 462, 513
EaeI YGGCCR 2 cut(s) 3, 1119
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Ecl136II GAGCTC 2 cut(s) 1004, 1136
Eco130I CCWWGG 2 cut(s) 587, 1044
Eco24I GRGCYC 2 cut(s) 1006, 1138
Eco32I GATATC 1 cut(s) 704
Eco47I GGWCC 1 cut(s) 552
Eco53kI GAGCTC 2 cut(s) 1004, 1136
Eco57I CTGAAG 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 472
EcoICRI GAGCTC 2 cut(s) 1004, 1136
EcoRII CCWGG 2 cut(s) 679, 739
EcoRV GATATC 1 cut(s) 704
EcoT14I CCWWGG 2 cut(s) 587, 1044
EcoT22I ATGCAT 2 cut(s) 298, 846
EcoT38I GRGCYC 2 cut(s) 1006, 1138
ErhI CCWWGG 2 cut(s) 587, 1044
FaeI CATG 9 cut(s) 49, 413, 503, 638, 694, 710, 809, 987, 1010
FaqI GGGAC 1 cut(s) 538
FatI CATG 9 cut(s) 45, 409, 499, 634, 690, 706, 805, 983, 1006
FauI CCCGC 1 cut(s) 563
FauNDI CATATG 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 81, 1095
FokI GGATG 4 cut(s) 146, 301, 380, 506
FriOI GRGCYC 2 cut(s) 1006, 1138
Fsp4HI GCNGC 2 cut(s) 81, 1095
GluI GCNGC 2 cut(s) 81, 1095
GsuI CTGGAG 1 cut(s) 702
HaeIII GGCC 4 cut(s) 5, 832, 1017, 1121
HapII CCGG 2 cut(s) 833, 969
Hin1II CATG 9 cut(s) 49, 413, 503, 638, 694, 710, 809, 987, 1010
HinfI GANTC 2 cut(s) 11, 782
HpaII CCGG 2 cut(s) 833, 969
HphI GGTGA 4 cut(s) 34, 526, 988, 1126
Hpy166II GTNNAC 2 cut(s) 670, 979
Hpy188I TCNGA 8 cut(s) 165, 179, 241, 334, 651, 814, 876, 945
Hpy188III TCNNGA 5 cut(s) 46, 500, 635, 707, 857
Hpy8I GTNNAC 2 cut(s) 670, 979
Hpy99I CGWCG 1 cut(s) 858
HpyAV CCTTC 2 cut(s) 65, 254
HpyCH4III ACNGT 4 cut(s) 258, 608, 1114, 1152
HpyCH4V TGCA 9 cut(s) 35, 83, 296, 356, 377, 844, 987, 1028, 1060
HpyF10VI GCNNNNNNNGC 3 cut(s) 1010, 1066, 1094
HpyF3I CTNAG 4 cut(s) 164, 472, 698, 776
Hsp92II CATG 9 cut(s) 49, 413, 503, 638, 694, 710, 809, 987, 1010
Kzo9I GATC 3 cut(s) 199, 462, 513
LmnI GCTCC 2 cut(s) 683, 1001
Lsp1109I GCAGC 2 cut(s) 67, 1081
LweI GCATC 3 cut(s) 15, 305, 853
MaeIII GTNAC 3 cut(s) 388, 413, 1146
MalI GATC 3 cut(s) 201, 464, 515
MboI GATC 3 cut(s) 199, 462, 513
MboII GAAGA 5 cut(s) 166, 167, 192, 394, 457
MhlI GDGCHC 2 cut(s) 1006, 1138
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 127, 282, 303, 563, 724, 735, 770, 952
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 791
MmeI TCCRAC 2 cut(s) 127, 979
MnlI CCTC 9 cut(s) 143, 171, 185, 358, 481, 542, 737, 874, 1080
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 298, 846
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 345, 507, 582
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 833, 969
MspR9I CCNGG 2 cut(s) 681, 741
Mva1269I GAATGC 2 cut(s) 298, 558
MvaI CCWGG 2 cut(s) 681, 741
MvnI CGCG 1 cut(s) 858
MwoI GCNNNNNNNGC 3 cut(s) 1010, 1066, 1094
NdeI CATATG 1 cut(s) 352
NdeII GATC 3 cut(s) 199, 462, 513
NlaIII CATG 9 cut(s) 49, 413, 503, 638, 694, 710, 809, 987, 1010
NlaIV GGNNCC 2 cut(s) 554, 1068
NmuCI GTSAC 1 cut(s) 388
NruI TCGCGA 1 cut(s) 858
NsiI ATGCAT 2 cut(s) 298, 846
NspI RCATGY 1 cut(s) 809
PagI TCATGA 4 cut(s) 45, 499, 634, 706
PaqCI CACCTGC 1 cut(s) 545
PctI GAATGC 2 cut(s) 298, 558
PfeI GAWTC 1 cut(s) 11
PfoI TCCNGGA 2 cut(s) 679, 739
PkrI GCNGC 2 cut(s) 82, 1096
PleI GAGTC 1 cut(s) 790
PpsI GAGTC 1 cut(s) 790
PsiI TTATAA 2 cut(s) 572, 644
Psp124BI GAGCTC 2 cut(s) 1006, 1138
Psp6I CCWGG 2 cut(s) 679, 739
PspGI CCWGG 2 cut(s) 679, 739
PspN4I GGNNCC 2 cut(s) 554, 1068
PspPI GGNCC 1 cut(s) 552
RruI TCGCGA 1 cut(s) 858
RsaI GTAC 2 cut(s) 605, 749
RsaNI GTAC 2 cut(s) 604, 748
SacI GAGCTC 2 cut(s) 1006, 1138
SaqAI TTAA 3 cut(s) 345, 507, 582
SatI GCNGC 2 cut(s) 81, 1095
Sau3AI GATC 3 cut(s) 199, 462, 513
Sau96I GGNCC 1 cut(s) 552
SchI GAGTC 1 cut(s) 791
ScrFI CCNGG 2 cut(s) 681, 741
SduI GDGCHC 2 cut(s) 1006, 1138
SfaNI GCATC 3 cut(s) 15, 305, 853
SinI GGWCC 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 1137
SmoI CTYRAG 1 cut(s) 1137
Sse9I AATT 8 cut(s) 127, 282, 303, 563, 724, 735, 770, 952
SsiI CCGC 1 cut(s) 556
SstI GAGCTC 2 cut(s) 1006, 1138
StyD4I CCNGG 2 cut(s) 679, 739
StyI CCWWGG 2 cut(s) 587, 1044
TaaI ACNGT 4 cut(s) 258, 608, 1114, 1152
TaqI TCGA 4 cut(s) 14, 202, 213, 610
TaqII GACCGA 1 cut(s) 540
TasI AATT 8 cut(s) 127, 282, 303, 563, 724, 735, 770, 952
TatI WGTACW 1 cut(s) 603
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 3 cut(s) 345, 507, 582
Tru9I TTAA 3 cut(s) 345, 507, 582
TscAI CASTG 5 cut(s) 226, 465, 677, 994, 1035
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 2 cut(s) 80, 1094
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 4 cut(s) 395, 488, 815, 833
TspGWI ACGGA 1 cut(s) 124
TspRI CASTG 5 cut(s) 226, 465, 677, 994, 1035
VpaK11BI GGWCC 1 cut(s) 552
XapI RAATTY 2 cut(s) 735, 952
XceI RCATGY 1 cut(s) 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 1051
Zsp2I ATGCAT 2 cut(s) 298, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.